bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Aug. 30, 2024
Abstract
Cadmium
(Cd)
is
a
major
environmental
pollutant
with
high
toxicity
potential.
Even
though
reduction
of
growth,
including
the
primary
root,
clear
consequence
Cd
exposure,
profound
understanding
impact
on
root
apical
meristem
(RAM)
and
elongation/differentiation
zone
(EDZ)
still
lacking.
In
this
study,
Arabidopsis
thaliana
roots
were
subjected
to
divided
into
tips
(RT)
remaining
(RR)
separately
assess
effect
using
transcriptomics,
ionomics
metabolomics.
Elemental
profiling
revealed
lower
accumulation
in
RT
differences
mineral
contents
between
RR.
Transcriptomic
analysis
demonstrated
distinct
gene
expression
patterns
RR,
having
less
RT.
Functional
enrichment
genes
associated
iron
sulfur
homeostasis
as
well
response
light
both
RR
RT-specific
responses
included
several
regulated
by
transcription
factor
ELONGATED
HYPOCOTYL
5
(HY5)
notably,
hy5
mutant
showed
increased
sensitivity
compared
wild
type.
This
study
provides
comprehensive
insights
inhibitory
effects
elucidating
molecular
mechanisms
involved,
particularly
highlighting
role
HY5
accumulation.
Frontiers in Plant Science,
Journal Year:
2024,
Volume and Issue:
15
Published: June 10, 2024
Abiotic
and
biotic
stresses
globally
constrain
plant
growth
impede
the
optimization
of
crop
productivity.
The
phytohormone
auxin
is
involved
in
nearly
every
aspect
development.
Auxin
acts
as
a
chemical
messenger
that
influences
gene
expression
through
short
nuclear
pathway,
mediated
by
family
specific
DNA-binding
transcription
factors
known
Response
Factors
(ARFs).
ARFs
thus
act
effectors
response
translate
signals
into
regulation
responsive
genes.
Since
initial
discovery
first
ARF
Arabidopsis,
advancements
genetics,
biochemistry,
genomics,
structural
biology
have
facilitated
development
models
elucidating
action
their
contributions
to
generating
responses.
Yet,
significant
gaps
persist
our
understanding
despite
these
endeavors.
Unraveling
functional
roles
regulating
stress
response,
alongside
genetic
molecular
mechanisms,
still
its
nascent
phase.
Here,
we
review
recent
research
outcomes
on
ARFs,
detailing
involvement
leaf,
flower,
root
organogenesis
development,
well
responses
corresponding
regulatory
mechanisms:
including
patterns,
characterization,
transcriptional,
post-transcriptional
post-
translational
across
diverse
conditions.
Furthermore,
delineate
unresolved
questions
forthcoming
challenges
research.
New Phytologist,
Journal Year:
2025,
Volume and Issue:
unknown
Published: March 14, 2025
Summary
Nitrate
is
the
main
source
of
nitrogen
in
plants.
stimulation
causes
changes
plant
secondary
metabolites,
including
anthocyanins.
However,
molecular
mechanism
underlying
how
nitrate
regulates
anthocyanin
biosynthesis
remains
unclear.
In
this
study,
we
identified
a
response
factor
MdLBD36
apple.
This
positively
regulated
deficiency‐induced
by
promoting
transcriptional
activity
MdABI5,
an
important
regulator
anthocyanins,
and
directly
activated
MdABI5
expression.
The
E3
ubiquitin
ligase
MdBRG3
promoted
ubiquitinated
degradation
to
reduce
under
nitrate‐sufficient
conditions.
deficiency‐activated
MdMPK7
maintained
stimulating
effect
on
counteracting
MdBRG3‐mediated
MdLBD36.
coordinated
gibberellin
(GA)
signaling
regulate
biosynthesis.
GA
repressor
MdRGL2a
contributed
MdLBD36‐promoted
enhancing
MdLBD36–MdABI5
interaction
increasing
activation
.
summary,
our
results
elucidate
framework
regulation
ubiquitination
phosphorylation.
study
revealed
cross
talk
between
provides
references
for
in‐depth
exploration
signal
transduction
pathway
its
interactions
with
hormones.
Plants,
Journal Year:
2024,
Volume and Issue:
13(21), P. 3051 - 3051
Published: Oct. 31, 2024
Phytohormones
are
organic
compounds
produced
in
trace
amounts
within
plants
that
regulate
their
physiological
processes.
Their
effects
highly
complex
and
diverse.
They
influence
processes
ranging
from
cell
division,
elongation,
differentiation
to
plant
germination
rooting.
Therefore,
phytohormones
play
a
crucial
regulatory
role
growth
development.
Recently,
various
studies
have
highlighted
the
of
PHs,
such
as
auxin,
cytokinin
(CK),
abscisic
acid
(ABA),
newer
classes
brassinosteroid
(BR)
peptide
hormone,
responses
toward
environmental
stresses.
These
hormones
not
only
distinct
roles
at
different
stages
but
also
interact
promote
or
inhibit
each
other,
thus
effectively
regulating
Roots
primary
organs
for
water
mineral
absorption
plants.
During
seed
germination,
radicle
breaks
through
coat
grows
downward
form
root.
This
occurs
because
root
needs
quickly
penetrate
soil
absorb
nutrients,
providing
essential
support
plant's
subsequent
growth.
Root
development
is
precisely
regulated
process
influenced
by
signals.
Changes
architecture
can
affect
ability
nutrients
water,
which
turn
impacts
crop
yield.
Thus,
studying
regulation
great
significance.
Numerous
reported
on
phytohormones,
particularly
auxins,
regulation.
paper
reviews
recent
both
individually
combination,
reference
researchers
this
field
offering
perspectives
future
research
directions
improving
yields.
New Phytologist,
Journal Year:
2025,
Volume and Issue:
unknown
Published: Feb. 1, 2025
Root
hair
(RH)
cells
can
elongate
to
several
hundred
times
their
initial
size,
and
are
an
ideal
model
system
for
investigating
cell
size
control.
Their
development
is
influenced
by
both
endogenous
external
signals,
which
combined
form
integrative
response.
Surprisingly,
a
low-temperature
condition
of
10°C
causes
increased
RH
growth
in
Arabidopsis
monocots,
even
when
the
rest
plant
halted.
Previously,
we
demonstrated
strong
correlation
between
response
significant
decrease
nutrient
availability
medium
under
conditions.
However,
molecular
basis
responsible
receiving
transmitting
signals
related
nutrients
soil,
relation
development,
remain
largely
unknown.
We
have
discovered
two
antagonic
gene
regulatory
networks
(GRNs)
controlling
early
transcriptome
responses
low
temperature.
One
GNR
enhances
it
commanded
transcription
factors
(TFs)
ROOT
HAIR
DEFECTIVE
6
(RHD6),
6-LIKE
2
4
(RSL2-RSL4)
member
homeodomain
leucine
zipper
(HD-Zip
I)
group
I
16
(AtHB16).
On
other
hand,
second
GRN
was
identified
as
negative
regulator
at
temperature
composed
trihelix
TF
GT2-LIKE1
(GTL1)
associated
DF1,
previously
unidentified
MYB-like
(AT2G01060)
members
HD-Zip
(AtHB3,
AtHB13,
AtHB20,
AtHB23).
Functional
analysis
GRNs
highlights
complex
regulation
temperature,
more
importantly,
these
discoveries
enhance
our
comprehension
how
plants
synchronize
variations
cellular
level.
Frontiers in Plant Science,
Journal Year:
2025,
Volume and Issue:
16
Published: March 10, 2025
Nitrate
signaling
coordinates
the
expression
of
a
broad
range
genes
involved
in
nitrate
uptake,
transport,
and
assimilation,
playing
crucial
role
plant
growth
development.
Notably,
interacts
extensively
with
various
messenger
molecules,
including
phytohormones,
calcium
ions
(Ca
2+
),
reactive
oxygen
species
(ROS),
peptides,
sucrose.
This
crosstalk
amplifies
optimizes
nutrient
coordinating
developmental
processes
enhancing
stress
tolerance.
Understanding
interactions
between
these
molecules
offers
valuable
insights
into
improving
crop
use
efficiency
(NUE),
resilience,
agricultural
sustainability.
Using
Arabidopsis
thaliana
as
model,
this
review
consolidates
current
knowledge
on
its
interplay
other
pathways
that
regulate
development
adaptation.
Finally,
highlights
potential
genetic
strategies
for
NUE,
contributing
to
more
sustainable
practices.
Physiologia Plantarum,
Journal Year:
2025,
Volume and Issue:
177(2)
Published: March 1, 2025
Auxins
are
essential
plant
hormones
that
regulate
growth,
development,
and
responses
to
environmental
stressors.
Plants
frequently
encounter
challenges
such
as
pests,
diseases,
high
temperatures,
drought,
salinity,
which
necessitate
adaptive
mechanisms
for
survival.
modulate
stress-responsive
signaling
pathways
by
regulating
gene
expression
interacting
with
other
phytohormones,
thereby
influencing
physiological
processes
maintain
homeostasis
under
stress
conditions.
This
review
elucidates
the
molecular
through
auxins
mediate
biotic
abiotic
stresses.
The
findings
indicate
pivotal
in
activating
defense
pathways.
Differential
of
auxin-related
genes
has
been
observed
various
crops
conditions,
underscoring
their
role
enhancing
resistance
against
pathogens
improving
drought
tolerance.
Additionally,
influence
root
architecture
growth
responses,
facilitating
adaptations
trichome
development
herbivory.
Moreover,
interplay
between
auxin
phytohormones
is
crucial
effective
responses.
Overall,
play
a
multifaceted
enabling
plants
cope
stresses
mechanisms.
Understanding
these
complex
involving
can
inform
future
research
aimed
at
engineering
resilient
varieties
capable
thriving
changing
climates.
Further
studies
needed
clarify
specific
functions
contexts
develop
practical
applications
crop
improvement.
Journal of Experimental Botany,
Journal Year:
2024,
Volume and Issue:
75(15), P. 4589 - 4598
Published: June 3, 2024
Abstract
Reactive
oxygen
species
(ROS)
are
essential
signaling
molecules
that
enable
cells
to
respond
rapidly
a
range
of
stimuli.
The
ability
plants
recognize
various
stressors,
incorporate
variety
environmental
inputs,
and
initiate
stress-response
networks
depends
on
ROS.
Plants
develop
resilience
defensive
systems
as
result
these
processes.
Root
hairs
central
components
root
biology
since
they
increase
the
surface
area
root,
anchor
it
in
soil,
its
absorb
water
nutrients,
foster
interactions
between
microorganisms.
In
this
review,
we
specifically
focused
hair
highlighted
identification
ROS
receptors,
important
new
regulatory
hubs
connect
production,
transport,
context
two
hormonal
pathways
(auxin
ethylene)
under
low
temperature
input
related
nutrients.
As
play
crucial
role
regulating
cell
elongation
rates,
gaining
traction
very
valuable
single
plant
model
for
investigating
homeostasis
signaling.
These
promising
findings
might
soon
facilitate
development
roots
more
resilient
stressors.
Frontiers in Plant Science,
Journal Year:
2025,
Volume and Issue:
15
Published: Jan. 14, 2025
Nitrogen
deficiency
is
a
key
constraint
on
crop
yield.
Cassava,
the
world's
sixth-largest
food
and
crucial
source
of
feed
industrial
materials,
can
thrive
in
marginal
soils,
yet
its
yield
still
significantly
affected
by
limited
nitrogen
availability.
Investigating
cassava's
response
mechanisms
to
scarcity
therefore
essential
for
advancing
molecular
breeding
identifying
nitrogen-efficient
varieties.
This
research
undertook
comprehensive
analysis
cassava
seedlings'
physiological,
gene
expression,
metabolite
responses
under
low
stress.
Findings
revealed
that
drastically
suppressed
seedling
growth,
reduced
nitrate
ammonium
transport
aerial
parts,
led
marked
increase
carbohydrate,
reactive
oxygen
species,
ion
levels
leaves.
Transcriptomic
metabolomic
analyses
further
demonstrated
notable
alterations
genes
metabolites
linked
carbon
metabolism,
flavonoid
biosynthesis,
purine
metabolic
pathway.
Additionally,
several
transcription
factors
associated
with
biosynthesis
nitrogen-deficient
conditions
were
identified.
Overall,
this
study
offers
fresh
insights
valuable
genetic
resources
unraveling
adaptive
deprivation.