Scientific Reports,
Journal Year:
2024,
Volume and Issue:
14(1)
Published: March 18, 2024
Abstract
Minichromosome
Maintenance
Complex
Component
4
(MCM4)
is
a
vital
component
of
the
mini-chromosome
maintenance
complex
family,
crucial
for
initiating
replication
eukaryotic
genomes.
Recently,
there
has
been
growing
interest
in
investigating
significance
MCM4
different
types
cancer.
Despite
existing
research
on
this
topic,
comprehensive
analysis
across
various
cancer
lacking.
This
study
aims
to
bridge
knowledge
gap
by
presenting
thorough
pan-cancer
MCM4,
shedding
light
its
functional
implications
and
potential
clinical
applications.
The
utilized
multi-omics
samples
from
databases.
Bioinformatic
tools
were
employed
explore
expression
profiles,
genetic
alterations,
phosphorylation
states,
immune
cell
infiltration
patterns,
subtypes,
enrichment,
disease
prognosis,
as
well
diagnostic
responsiveness
drugs
range
cancers.
Our
demonstrates
that
closely
associated
with
oncogenesis,
prognosis
diagnosis
tumors
proposes
may
function
biomarker
pan-cancer,
providing
deeper
understanding
role
development
treatment.
Signal Transduction and Targeted Therapy,
Journal Year:
2023,
Volume and Issue:
8(1)
Published: Aug. 28, 2023
Abstract
Immune-checkpoint
inhibitors
(ICBs),
in
addition
to
targeting
CTLA-4,
PD-1,
and
PD-L1,
novel
LAG-3
drugs
have
also
been
approved
clinical
application.
With
the
widespread
use
of
drug,
we
must
deeply
analyze
dilemma
agents
seek
a
breakthrough
treatment
prospect.
Over
past
decades,
these
demonstrated
dramatic
efficacy,
especially
patients
with
melanoma
non-small
cell
lung
cancer
(NSCLC).
Nonetheless,
field
broad
concept
solid
tumours,
non-specific
indications,
inseparable
immune
response
side
effects,
unconfirmed
progressive
disease,
complex
regulatory
networks
resistance
are
four
barriers
that
limit
its
Fortunately,
successful
trials
ICB
combination
therapies,
advent
era
oncolytic
virus
gene
editing,
technical
mRNA
vaccines
nano-delivery
systems
made
remarkable
breakthroughs
currently.
In
this
review,
enumerate
mechanisms
each
checkpoint
targets,
associations
between
tumour
mutation
burden,
key
or
signalling
pathways,
specific
evidence
efficacy
classical
targets
new
among
different
types
put
forward
dialectical
thoughts
on
drug
safety.
Finally,
discuss
importance
accurate
triage
based
recent
advances
predictive
biomarkers
diagnostic
testing
techniques.
JAMA Network Open,
Journal Year:
2022,
Volume and Issue:
5(11), P. e2239778 - e2239778
Published: Nov. 2, 2022
Importance
A
considerable
number
of
clinical
trials
neoadjuvant
immunotherapy
for
patients
with
resectable
esophageal
cancer
are
emerging.
However,
systematic
evaluations
these
studies
lacking.
Objective
To
provide
state-of-the-art
evidence
and
normative
theoretical
support
locally
advanced
cancer.
Data
Sources
PubMed,
Embase,
Cochrane
Library,
ClinicalTrials.gov
databases
were
searched
relevant
original
articles
conference
proceedings
that
published
in
English
through
April
1,
2022.
Study
Selection
Published
phase
2
or
3
included
stage
I
to
IV
who
received
immune
checkpoint
inhibitors
(ICIs)
before
surgery
as
monotherapy
combination
other
therapies.
Extraction
Synthesis
The
Preferred
Reporting
Items
Systematic
Reviews
Meta-analyses
the
Meta-analysis
Observational
Studies
Epidemiology
guidelines
meta-analysis
followed
extract
data.
random-effects
model
was
adopted
if
heterogeneity
significant
(
statistic
>50%);
otherwise,
common-effects
used.
analyses
conducted
from
8,
Main
Outcomes
Measures
Pathological
complete
response
(pCR)
rate
major
pathological
(MPR)
considered
be
primary
outcomes
calculated
immunotherapy.
Incidence
treatment-related
severe
adverse
events
set
measure
safety
outcome.
R0
surgical
resection
summarized.
Subgroup
according
histologic
subtype
ICI
types.
Results
total
27
815
included.
Pooled
rates
31.4%
(95%
CI,
27.6%-35.3%)
pCR
48.9%
42.0-55.9%)
MCR
In
terms
safety,
pooled
incidence
26.9%
16.7%-38.3%).
Most
achieved
(98.6%;
95%
97.1%-99.6%).
Regarding
subtypes,
32.4%
28.2%-36.8%)
squamous
cell
carcinoma
25.2%
16.3%-35.1%)
adenocarcinoma.
MPR
49.4%
42.1%-56.7%)
carcinoma.
Conclusions
Relevance
This
study
found
chemotherapy
had
promising
Randomized
long-term
follow-up
warranted
validate
findings
benefits
ICIs.
New England Journal of Medicine,
Journal Year:
2023,
Volume and Issue:
389(10), P. 911 - 921
Published: Sept. 6, 2023
Alveolar
soft
part
sarcoma
(ASPS)
is
a
rare
soft-tissue
with
poor
prognosis
and
no
established
therapy.
Recently,
encouraging
responses
to
immune
checkpoint
inhibitors
have
been
reported.
Frontiers in Immunology,
Journal Year:
2025,
Volume and Issue:
15
Published: Jan. 24, 2025
Purpose
Cystatin
2
(CST2)
is
a
cysteine
protease
inhibitor,
and
recent
research
suggests
its
potential
involvement
in
cancer
development.
However,
role
the
occurrence,
progression,
prognosis
of
pan-cancer
has
not
been
systematically
investigated.
Materials
methods
This
study
comprehensively
analyzes
differential
expression
CST2
pan-cancer.
The
distribution
patterns
were
examined
using
single-cell
datasets.
Furthermore,
we
conducted
comprehensive
evaluation
correlation
between
various
factors.
These
factors
include
prognosis,
immune
cell
infiltration,
immune-related
genes,
mutations,
methylation,
tumor
mutation
burden
(TMB),
microsatellite
instability
(MSI).
In
addition,
analyzed
sensitivity
drugs
dependent
on
expression.
We
utilized
gene
set
enrichment
analysis
(GSEA)
to
explore
biological
functions
across
different
types.
Finally,
gastric
lines,
will
investigate
impact
knockout
levels,
clonal
proliferation,
apoptosis,
migration.
Results
exhibits
abnormal
overexpression
multiple
tumors.
Single-cell
reveals
high
fibroblasts.
closely
associated
with
TMB,
MSI.
Enrichment
demonstrated
significant
pathways.
stomach
adenocarcinoma
(STAD),
CST2-related
risk
models
are
demonstrate
strong
predictive
capabilities,
while
also
being
linked
microenvironment.
Drug
indicates
21
chemotherapy
drugs.
experimental
validation
revealed
significantly
elevated
STAD,
indicating
as
driver
regulating
malignant
proliferation
Conclusion
serves
biomarker,
playing
critical
facilitating
migration
processes
STAD.
Nature Communications,
Journal Year:
2025,
Volume and Issue:
16(1)
Published: March 1, 2025
Abstract
Cancer
treatment
has
made
significant
advancements
in
recent
decades,
however
many
patients
still
experience
failure
or
resistance.
Attempts
to
identify
determinants
of
response
have
been
hampered
by
a
lack
tools
that
simultaneously
accommodate
smaller
datasets,
sparse
missing
measurements,
multimodal
clinicogenomic
data,
and
can
be
interpreted
extract
biological
clinical
insights.
We
introduce
the
Clinical
Transformer,
an
explainable
transformer-based
deep-learning
framework
addresses
these
challenges.
Our
maximizes
data
via
self-supervised,
gradual,
transfer
learning,
yields
survival
predictions
surpassing
performance
state-of-the-art
methods
across
diverse,
independent
datasets.
The
framework’s
generative
capability
enables
silico
perturbation
experiments
test
counterfactual
hypotheses.
By
perturbing
immune-associated
features
immunotherapy-naive
patients,
we
patient
subset
may
benefit
from
immunotherapy,
validate
this
finding
three
immunotherapy-treated
cohorts.
anticipate
our
work
will
empower
scientific
community
further
harness
for
patients.
Frontiers in Immunology,
Journal Year:
2022,
Volume and Issue:
13
Published: Nov. 21, 2022
Introduction
Cuproptosis
is
a
novel
identified
regulated
cell
death
(RCD),
which
correlated
with
the
development,
treatment
response
and
prognosis
of
cancer.
However,
potential
role
cuproptosis-related
genes
(CRGs)
in
tumor
microenvironment
(TME)
gastric
cancer
(GC)
remains
unknown.
Methods
Transcriptome
profiling,
somatic
mutation,
copy
number
alteration
clinical
data
GC
samples
were
downloaded
from
Cancer
Genome
Atlas
(TCGA)
Gene
Expression
Omnibus
(GEO)
database
to
describe
alterations
CRGs
genetic
transcriptional
fields.
Differential,
survival
univariate
cox
regression
analyses
carried
out
investigate
GC.
molecular
subtypes
by
using
consensus
unsupervised
clustering
analysis
based
on
expression
profiles
CRGs,
further
analyzed
GO
KEGG
gene
set
variation
(GSVA).
Genes
distinct
also
enrichment
(GSEA).
Differentially
expressed
(DEGs)
screened
analysis.
Consensus
prognostic
DEGs
was
performed
identify
genomic
subtypes.
Next,
patients
randomly
categorized
into
training
testing
group
at
ratio
1:1.
CRG
Risk
scoring
system
constructed
through
logistic
least
absolute
shrinkage
selection
operator
(LASSO)
analysis,
multivariate
validated
combined
groups.
Real-time
quantitative
polymerase
chain
reaction
(RT-qPCR)
used
evaluate
key
genes.
Sensitivity
specificity
examined
receiver
operating
characteristic
(ROC)
curves.
pRRophetic
package
R
therapeutic
effects
drugs
high-
low-
risk
score
group.
Finally,
nomogram
developed
predict
patients’
incorporating
clinicopathological
features
score.
Results
Most
up-regulated
tissues
showed
relatively
high
mutation
frequency.
Survival
revealed
that
LIAS
FDX1
significantly
associated
survival.
After
classified
two
cuproptosis
subtypes,
(gender,
age,
grade
TNM
stage),
prognosis,
metabolic
related
pathways
immune
infiltration
TME
84
DEGs,
obtained
primarily
enriched
regulation
metabolism
intracellular/extracellular
structure
Univariate
32
DEGs.
According
re-classified
grade,
T
N
stage,
patients.
Nest,
moderate
sensitivity
specificity.
A
score,
characterized
decreased
microsatellite
instability-high
(MSI-H),
burden
(TMB)
stem
(CSC)
index,
stromal
TME,
indicated
poor
Four
five
dysregulated
compared
normal
samples.
Moreover,
greatly
multiple
drugs.
we
established
highly
accurate
for
promoting
applicability
system.
Discussion
Our
comprehensive
demonstrated
their
roles
features,
prognosis.
These
findings
may
improve
our
understanding
provide
new
perceptions
doctors
develop
more
effective
personalized
therapy
strategies.
Journal of Biomedical Science,
Journal Year:
2023,
Volume and Issue:
30(1)
Published: April 13, 2023
The
tumor
microenvironment
(TME)
has
a
central
role
in
the
oncogenesis
of
osteosarcomas.
composition
TME
is
essential
for
interaction
between
and
immune
cells.
aim
this
study
was
to
establish
prognostic
index
(TMEindex)
osteosarcoma
based
on
TME,
from
which
estimates
about
patient
survival
individual
response
checkpoint
inhibitor
(ICI)
therapy
can
be
deduced.
International Journal of Surgery,
Journal Year:
2023,
Volume and Issue:
unknown
Published: June 6, 2023
Locally
advanced
oral
squamous
cell
carcinoma
(LAOSCC)
is
associated
with
a
high
rate
of
recurrence
and
poor
survival.
Given
the
recent
successes
neoadjuvant
immunochemotherapy
(NAICT)
in
solid
tumors,
it
promising
to
use
this
treatment
modality
achieve
better
pathological
response
improve
survival
LAOSCC,
clinical
evidence
needed
assess
its
safety
efficacy.A
prospective
trial
NAICT
toripalimab
(PD-1
inhibitor)
albumin
paclitaxel/cisplatin
(TTP)
was
conducted
patients
stage
III
IVA
OSCC.
Intravenous
paclitaxel
(260
mg/m
2
),
cisplatin
(75
(240
mg)
were
given
sequence
on
day
1
each
21
cycle
for
two
cycles,
followed
by
radical
surgery
risk-adapted
adjuvant
(chemo)radiotherapy.
The
primary
endpoints
major
(MPR).
Targeted
next
generation
sequencing
multiplex
immunofluorescence
performed
molecular
characteristics
tumor
immune
microenvironment
pre-NAICT
post-NAICT
samples.Twenty
enrolled.
well-tolerated
low
incidence
grades
3-4
adverse
events
three
patients.
completion
rates
subsequent
R0
resection
100%.
MPR
60%,
including
30%
complete
response.
achieved
all
four
combined
positive
score
PD-L1>10.
density
tertiary
lymphatic
structure
samples
predicted
NAICT.
During
median
23-month
follow-up,
disease-free
90%,
overall
95%.NAICT
TTP
protocol
LAOSCC
feasible
well
tolerated,
no
obstruction
surgery.
This
supportive
further
randomized
trials
using
LAOSCC.
Journal for ImmunoTherapy of Cancer,
Journal Year:
2023,
Volume and Issue:
11(1), P. e005801 - e005801
Published: Jan. 1, 2023
For
patients
with
advanced
non-small
cell
lung
carcinoma
(NSCLC),
immune
checkpoint
inhibitor
(ICPI)
and
chemotherapy
(chemo)
ICPI
represent
two
distinct
first-line
standard-of-care
regimens
without
clear
established
biomarkers
to
inform
the
optimal
choice
for
individual
patients.
Here,
we
examined
complementary
roles
of
tumor
mutational
burden
(TMB)
programmed
death
ligand-1
(PD-L1)
immunohistochemistry
(IHC)
therapy
using
a
large
real-world
(rw)
data
set.