bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: July 19, 2024
Abstract
The
industrial
bast
fibre
crop
jute
(
Corchorus
sp.)
is
known
for
its
long
lignocellulosic
multi-utility
fibres.
Information
on
lignification
limited,
and
many
enzymes
in
the
lignin
pathway
are
not
well
documented.
One
such
enzyme
laccase
(EC
1.10.3.2),
involved
final
polymerization
step
of
lignification.
A
whole-genome
search
white
capsularis
)
revealed
34
putative
CcaLAC
genes.
Phylogenetic
analysis
categorized
these
genes
into
six
groups,
with
17
predominantly
expressed
phloem
tissue,
9
leaf,
4
xylem
roots.
steady
increase
gene
expression,
from
plantlets
to
harvest,
was
observed
several
s.
Some
were
selected
further
based
homology
Arabidopsis
pathway-modifying
laccases
AtLAC
s).
Transcriptomics
data
confirmed
their
expression
tissues,
some
showing
significantly
lower
dlpf
,
a
low-lignin
fibre-containing
mutant.
Changes
under
abiotic
stresses
like
ABA
hormone
copper
heavy
metal.
Target
sites
Ath-miR397a
Ath-miR397b
predicted
11
s,
respectively,
suggesting
possible
post-transcriptional
modification
via
microRNA.
Subcellular
localization
showed
s
multiple
plant
cell
compartments.
Protein
structure
predictions
up
10
motifs
CcaLACs,
18
containing
transmembrane
helices.
Overall,
CcaLAC28
CcaLAC32
likely
process
(bast)
jute.
Modifying
could
enhance
our
understanding
potentially
lead
development
fibres,
meeting
high
demands
globally.
Highlights
Jute
identified
mainly
tissue.
key
candidates
Laccase
changes
stresses.
Key
Message
Identified
jute,
engineering
Industrialization,
intensive
farming,
rapid
population
growth
and
urbanization
are
the
source
of
a
large
number
pollutants
entering
environment.
The
current
concentration
xenobiotics
released
into
environment
exceeds
its
natural
ability
to
decompose
them.
Enzymatic
degradation
seems
be
an
environmentally
friendly
process.
Due
wide
spectrum
substrate
specificity,
from
inorganic
compounds
high
molecular
weight
organic
such
as
PAH
or
dyes,
well
favorable
biochemical
properties,
laccase
has
been
used
in
biological
removal
It
is
important
understand
mechanisms
evaluate
final
products
terms
their
toxicity.
oxidizes
substrates
with
simultaneous
reduction
oxygen
water,
which
purest
reaction
co-substrate.
That
why
it
called
green
biocatalyst.
trend
increase
production
enzymes
related
development
industry,
bioremediation
synthetic
chemistry.
This
leads
search
for
laccases
greater
activity
stability
under
extreme
conditions.
potential
degrade
can
promoted
by
improving
enzymatic
catalytic
characterization
using
protein
engineering
other
genetic
methods.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: April 29, 2024
ABSTRACT
Rising
temperatures
and
associated
heat
stress
pose
an
increasing
threat
to
soybean
[
Glycine
max
L.
(Merr.)]
productivity.
Due
a
limited
choice
of
mitigation
strategies,
the
primary
arsenal
in
crop
protection
comes
from
improved
genetic
tolerance.
Despite
this
current
looming
production,
studies
have
examined
genetics
There
is
need
conduct
large-scale
germplasm
screening
studies,
including
genome-wide
association
mapping
genomic
prediction,
identify
regions
useful
markers
with
tolerance
traits
that
can
be
utilized
breeding
programs.
We
screened
diverse
panel
450
accessions
MG
0-IV
dissect
architecture
physiological
growth-related
under
optimal
study
trait
relationships
predictive
ability.
The
information
response
revealed
provides
insights
into
Thirty-seven
significant
SNPs
were
detected,
20
unique
detected
optimal,
16
stress,
single
SNP
for
index.
Only
one
was
identified
across
temperature
treatments
indicating
divergence
responses
temperature.
prediction
worked
well
biomass
traits,
but
had
poor
model
accuracy.
Through
our
phenotyping
efforts,
we
tolerant
accessions.
identification
are
variety
development
through
marker-assisted
selection.
Core
ideas
Soybean
exhibit
phenotypic
diversity
stress.
Large
scale
Previously
unreported
QTL
parameters
reported.
Genomic
shows
promise
abiotic
applications.
Frontiers in Plant Science,
Journal Year:
2024,
Volume and Issue:
15
Published: June 20, 2024
Citrus
is
commercially
propagated
via
grafting,
which
ensures
trees
have
consistent
fruit
traits
combined
with
favorable
from
the
rootstock
such
as
soil
adaptability,
vigor,
and
resistance
to
pathogens.
Graft
incompatibility
can
occur
when
scion
are
not
able
form
a
permanent,
healthy
union.
Understanding
preventing
graft
of
great
importance
in
breeding
new
cultivars
choice
by
growers.
The
US-1283,
citrandarin
generated
cross
“Ninkat”
mandarin
(
reticulata
)
“Gotha
Road”
#6
trifoliate
orange
Poncirus
trifoliata
),
was
released
after
years
field
evaluation
because
its
superior
productivity
good
quality
on
“Hamlin”
sweet
C.
sinensis
under
Florida’s
growing
conditions.
Subsequently,
it
observed
that
“Bearss”
lemon
limon
“Valencia”
grafted
onto
US-1283
exhibited
unhealthy
growth
near
manifested
stem
grooving
necrosis
underneath
bark
side
graft.
Another
rootstock,
US-812
“Sunki”
×
P.
“Benecke”),
fully
compatible
same
scions.
Transcriptome
analysis
performed
vascular
tissues
above
below
union
combinations
identify
expression
networks
associated
help
understand
processes
potential
causes
incompatibility.
Transcriptional
reprogramming
stronger
incompatible
than
Differentially
expressed
genes
(DEGs)
but
scions,
were
oxidative
stress
plant
defense,
among
others,
similar
pathogen-induced
immune
response
localized
rootstock;
however,
no
pathogen
infection
detected.
Therefore,
hypothesized
this
could
been
triggered
signaling
miscommunications
between
either
through
(1)
unknown
molecules
perceived
danger
signals
(2)
missing
or
receptors
necessary
for
formation
union,
(3)
overall
perception
non-self,
(4)
combination
above.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: July 19, 2024
Abstract
The
industrial
bast
fibre
crop
jute
(
Corchorus
sp.)
is
known
for
its
long
lignocellulosic
multi-utility
fibres.
Information
on
lignification
limited,
and
many
enzymes
in
the
lignin
pathway
are
not
well
documented.
One
such
enzyme
laccase
(EC
1.10.3.2),
involved
final
polymerization
step
of
lignification.
A
whole-genome
search
white
capsularis
)
revealed
34
putative
CcaLAC
genes.
Phylogenetic
analysis
categorized
these
genes
into
six
groups,
with
17
predominantly
expressed
phloem
tissue,
9
leaf,
4
xylem
roots.
steady
increase
gene
expression,
from
plantlets
to
harvest,
was
observed
several
s.
Some
were
selected
further
based
homology
Arabidopsis
pathway-modifying
laccases
AtLAC
s).
Transcriptomics
data
confirmed
their
expression
tissues,
some
showing
significantly
lower
dlpf
,
a
low-lignin
fibre-containing
mutant.
Changes
under
abiotic
stresses
like
ABA
hormone
copper
heavy
metal.
Target
sites
Ath-miR397a
Ath-miR397b
predicted
11
s,
respectively,
suggesting
possible
post-transcriptional
modification
via
microRNA.
Subcellular
localization
showed
s
multiple
plant
cell
compartments.
Protein
structure
predictions
up
10
motifs
CcaLACs,
18
containing
transmembrane
helices.
Overall,
CcaLAC28
CcaLAC32
likely
process
(bast)
jute.
Modifying
could
enhance
our
understanding
potentially
lead
development
fibres,
meeting
high
demands
globally.
Highlights
Jute
identified
mainly
tissue.
key
candidates
Laccase
changes
stresses.
Key
Message
Identified
jute,
engineering