bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2021,
Volume and Issue:
unknown
Published: Nov. 16, 2021
Abstract
Large
Amazonian
rivers
impede
dispersal
for
many
species,
but
lowland
river
networks
frequently
rearrange,
thereby
altering
the
location
and
effectiveness
of
river-barriers
through
time.
These
rearrangements
may
promote
biotic
diversification
by
facilitating
episodic
allopatry
secondary
contact
among
populations.
We
sequenced
genome-wide
markers
to
evaluate
histories
divergence
introgression
in
six
avian
species-complexes.
first
tested
assumption
that
are
barriers
these
taxa
found
even
relatively
small
facilitate
divergence.
then
whether
species
diverged
with
gene
flow
recovered
reticulate
all
including
one
potential
case
hybrid
speciation.
Our
results
support
hypothesis
dynamics
speciation
reveal
rainforest
micro-endemic,
unrecognized
thus
threatened
imminent
extinction.
propose
hyper-diversity
originates
part
from
fine-scale
barrier
displacement
processes
–including
dynamics–
which
allow
populations
differentiate
disperse
into
contact.
Proceedings of the National Academy of Sciences,
Journal Year:
2023,
Volume and Issue:
120(2)
Published: Jan. 3, 2023
Landscape
dynamics
are
widely
thought
to
govern
the
tempo
and
mode
of
continental
radiations,
yet
effects
river
network
rearrangements
on
dispersal
lineage
diversification
remain
poorly
understood.
We
integrated
an
unprecedented
occurrence
dataset
4,967
species
with
a
newly
compiled,
time-calibrated
phylogeny
South
American
freshwater
fishes—the
most
species-rich
vertebrate
fauna
Earth—to
track
evolutionary
processes
associated
hydrogeographic
events
over
100
Ma.
Net
was
heterogeneous
through
time,
across
space,
among
clades.
Five
abrupt
shifts
in
net
rates
occurred
during
Paleogene
Miocene
(between
30
7
Ma)
association
major
landscape
evolution
events.
accelerated
from
Recent
(c.
20
0
Ma),
Western
Amazonia
having
highest
situ
diversification,
which
led
it
being
important
source
dispersing
other
regions.
All
regional
biotic
interchanges
were
documented
formation
biogeographic
corridors,
including
Early
23
16
uplift
Serra
do
Mar
da
Mantiqueira
Late
10
Northern
Andes
modern
transcontinental
Amazon
River.
The
combination
high
extensive
interchange
yielded
its
extraordinary
contemporary
richness
phylogenetic
endemism.
Our
results
support
hypothesis
that
dynamics,
shaped
history
drainage
basin
connections,
strongly
affected
assembly
basin-wide
fish
faunas.
The
rich
biodiversity
of
Amazonia
is
shaped
geographically
and
ecologically
by
its
rivers
their
cycles
seasonal
flooding.
Anthropogenic
effects,
such
as
deforestation,
infrastructure
development
extreme
climatic
events,
threaten
the
ecological
processes
sustaining
Amazonian
ecosystems.
In
this
Review,
we
explore
coupled
evolution
associated
with
terrestrial
seasonally
flooded
environments,
integrating
geological,
climatic,
genetic
evidence.
fluvial
environments
are
highly
heterogeneous,
drainage
system
historically
dynamic
continually
evolving;
a
result,
discharge,
sediment
load
strength
barriers
to
biotic
dispersal
has
changed
through
time.
Ecological
affinities
taxa,
rearrangements
variations
in
riverine
landscape
caused
past
climate
changes
have
mediated
high
diversity
found
modern-day
Amazonia.
connected
history
region's
provides
fundamental
information
for
mitigating
current
future
impacts.
However,
incomplete
knowledge
about
species
taxonomy,
distributions,
habitat
use,
interactions
occurrence
patterns
limits
our
understanding.
Partnerships
Indigenous
peoples
local
communities,
who
close
ties
land
natural
resources,
key
improving
generation
dissemination,
enabling
better
impact
assessments,
monitoring
management
systems
at
risk
from
evolving
pressures.
features
biodiverse
range
organisms
habitats.
This
Review
explores
geological
characteristics
role
shaping
region.
Science Advances,
Journal Year:
2022,
Volume and Issue:
8(14)
Published: April 8, 2022
Large
Amazonian
rivers
impede
dispersal
for
many
species,
but
lowland
river
networks
frequently
rearrange,
thereby
altering
the
location
and
effectiveness
of
barriers
through
time.
These
rearrangements
may
promote
biotic
diversification
by
facilitating
episodic
allopatry
secondary
contact
among
populations.
We
sequenced
genome-wide
markers
to
evaluate
histories
divergence
introgression
in
six
avian
species
complexes.
first
tested
assumption
that
are
these
taxa
found
even
relatively
small
facilitate
divergence.
then
whether
diverged
with
gene
flow
recovered
reticulate
all
including
one
potential
case
hybrid
speciation.
Our
results
support
hypothesis
speciation
reveal
rainforest
micro-endemic,
unrecognized,
thus
threatened
imminent
extinction.
propose
hyper-diversity
originates
partly
from
fine-scale
barrier
displacement
processes—including
dynamics—which
allow
populations
differentiate
disperse
into
contact.
Frontiers in Ecology and Evolution,
Journal Year:
2022,
Volume and Issue:
9
Published: Jan. 11, 2022
The
exceptional
concentration
of
vertebrate
diversity
in
continental
freshwaters
has
been
termed
the
“freshwater
fish
paradox,”
with
>
15,000
species
representing
more
than
20%
all
compressed
into
tiny
fractions
Earth’s
land
surface
area
(<0.5%)
or
total
aquatic
habitat
volume
(<0.001%).
This
study
asks
if
richness
world’s
river
basins
is
explainable
terms
captures
using
topographic
metrics
as
proxies.
River
Capture
Hypothesis
posits
that
drainage-network
rearrangements
have
accelerated
biotic
diversification
through
their
combined
effects
on
dispersal,
speciation,
and
extinction.
Yet
rates
capture
are
poorly
constrained
at
basin
scale
worldwide.
Here
we
assess
correlations
between
density
(data
for
14,953
obligate
freshwater
species)
basin-wide
landscape
evolution
3,119
basins),
including:
topography
(elevation,
average
relief,
slope,
drainage
area)
climate
(average
rainfall
air
temperature).
We
results
context
both
static
landscapes
(e.g.,
species-area
heterogeneity
relationships)
transient
capture,
tectonic
activity,
disequilibrium).
also
relax
assumptions
functional
neutrality
(tropical
vs.
extratropical,
tectonically
stable
active
terrains).
found
a
disproportionate
number
large,
lowland
tropical
South
America,
Africa,
Southeast
Asia,
under
predictable
conditions
large
geographic
area,
climate,
low
high
(i.e.,
rates).
However,
our
show
these
only
necessary,
but
not
fully
sufficient,
to
explain
highest
diversity.
Basins
located
regions,
places
where
predicted
be
most
conducive
formation
over
evolutionary
timescales.
Our
consistent
predictions
several
models,
including
Hypothesis,
Mega
Intermediate
Rate
support
conclusions
numerical
modeling
studies
indicating
transience
mechanistic
driver
net
riverine
riparian
organisms
widespread
distributions.
New Phytologist,
Journal Year:
2023,
Volume and Issue:
240(4), P. 1647 - 1658
Published: Aug. 28, 2023
The
geographic
distribution
of
plant
diversity
matches
the
gradient
habitat
heterogeneity
from
lowlands
to
mountain
regions.
However,
little
is
known
about
how
much
this
relationship
conserved
across
scales.
Using
World
Checklist
Vascular
Plants
and
high-resolution
biodiversity
maps
developed
by
species
models,
we
investigated
associations
between
richness
at
scales
Eurasia
Hengduan
Mountains
(HDM)
in
China.
Habitat
explains
seed
Eurasia,
but
41/97
HDM
families
even
higher
than
expected
fitted
statistical
relationships.
A
index
combining
growing
degree
days,
site
water
balance,
bedrock
type
performs
better
based
on
single
variables
explaining
richness.
In
HDM,
association
stronger
larger
Our
findings
suggest
that
high
environmental
provides
suitable
conditions
for
diversification
lineages
HDM.
Nevertheless,
alone
cannot
fully
explain
especially
western
complementary
mechanisms,
such
as
complex
geological
history
region,
may
have
contributed
shaping
exceptional
hotspot.
Nature Ecology & Evolution,
Journal Year:
2023,
Volume and Issue:
7(12), P. 2037 - 2044
Published: Oct. 19, 2023
South
America
is
home
to
the
highest
freshwater
fish
biodiversity
on
Earth,
and
hotspot
of
species
richness
located
in
western
Amazon
basin.
The
location
this
enigmatic,
as
it
inconsistent
with
pattern
observed
river
systems
across
world
increasing
towards
a
river's
mouth.
Here
we
investigate
role
capture
events
caused
by
Andean
mountain
building
repeated
episodes
flooding
Amazonia
shaping
modern-day
fishes
America,
particular.
To
end,
combine
reconstruction
networks
since
80
Ma
mechanistic
model
simulating
dispersal,
allopatric
speciation
extinction
over
dynamic
landscape
rivers
lakes.
We
show
that
consequent
numerous
small
habitats
be
highly
dynamic,
leading
high
diversification
rates
exceptional
richness.
history
marine
incursions
lakes,
including
Miocene
Pebas
mega-wetland
system
Amazonia,
played
secondary
role.
Biological reviews/Biological reviews of the Cambridge Philosophical Society,
Journal Year:
2025,
Volume and Issue:
unknown
Published: March 20, 2025
Barrier
displacement
by
river
capture
is
an
important
mechanism
for
the
assembly
of
freshwater
fish
faunas.
The
production
increasingly
comprehensive
and
rigorously
dated
phylogentic
trees
major
clades
fishes,
along
with
improved
resolution
in
historical
geomorphology,
provide
unprecedented
opportunity
to
develop
thorough
biogeographical
scenarios
faunal
that
synthesise
existing
knowledge
detailed
context
future
study.
Pecos
River
southwestern
North
America
a
textbook
example
drainage
formation
provides
straightforward
case
capture.
Fishes
ultimately
confined
middle
section
(Capitan
area
endemism)
have
their
closest
relatives
Brazos,
Colorado
(Texas),
Red
rivers,
which
served
as
ancient
dispersal
corridors
from
Mississippi
drainage.
Capitan
endemism
developed
association
two
dissolution
basins
that,
Late
Miocene,
captured
headwaters
these
rivers.
In
Pliocene
or
Early
Pleistocene,
endorheic
was
overflowed
into
tributary
Río
Grande,
became
lower
River.
nascent
also
harboured
endemic-fish
assemblage
part
nexus
springfed
rivers
(ancestral
Devils
River,
River)
comprised
endemism.
Even
after
through-flowing
linked
areas
endemism,
many
endemic
species
remained
only
within
original
giving
composite
fauna.
Grande
connection
later
allowed
fishes
dispersing
Gulf
Mexico
coast,
aided
Pleistocene
sea-level
falls
glacial
outbursts,
not
populate
but
disperse
up
Incision
valley
uplift
Sangre
de
Cristo
Mountains
empowered
headwater
streams
adjacent
South
Canadian
bringing
additional
fishes.
More
recently,
humans
introduced
at
least
50
drainage,
while
human
impacts
fragmented
native
Non-native
versus
status
remains
uncertain
several
(e.g.
Miniellus
stramineus)
multiple
lineages
diverse
origin
may
exist
some
widespread,
polytypic
like
Cyprinella
lutrensis
Pimephales
promelas.
fauna
anomaly
explainable
complex
geomorphological
history
produced
it.
As
such,
it
unique
studies
fish-assemblage
evolutionary
ecology.
Also,
its
neighbouring
drainages
helps
clarify
biogeography
(as
here).
Further
broadening
this
synthesis
could
support
large
spatial
scales,
illustrating
potential
now
exists
reconstructing
regional
river-drainage
Journal of Biogeography,
Journal Year:
2025,
Volume and Issue:
unknown
Published: March 31, 2025
ABSTRACT
Aim
Evolutionary
diversification
and
diversity
patterns
in
Neotropical
freshwater
fishes
can
be
predicted,
part,
by
the
effects
of
geomorphological
settings
landscape
evolution.
However,
studies
at
a
continental
scale,
focusing
on
specific
taxa
that
reflect
tight
connection
between
their
evolutionary
history
orogenic
uplifts
tectonically
active
Western
margin
watershed
migration
dynamics
passive
Eastern
South
America
remain
limited.
Here,
we
investigated
biogeographical
chronological
geographically
widespread
teleost
family
Erythrinidae
(Characiformes,
Erythrinoidea).
Location
Region.
Time
Period
Late
Cretaceous
Cenozoic.
Taxon
(Characiformes).
Methods
We
used
phylogenomic
parametric
biogeographic
methods.
Our
dataset
based
ultraconserved
elements
(UCEs)
included
29
erythrinoid
lineages
23
related
taxa.
Results
The
time
calibration
along
with
ancestral
area
estimation
proposes
superfamily
Erythrinoidea
originated
ca
.
80
Ma,
divergence
major
clades
during
Palaeogene
51–31
Ma.
diversified
rapidly
after
formation
transcontinental
Amazon
River
10
from
8
to
least
28
putative
species
today.
A
majority
erythrinid
(78%)
are
members
just
three
relatively
young
less
than
13
Ma:
Erythrinus
,
Hoplerythrinus
Hoplias
malabaricus
group.
present
contrasting
temporal
cladogenetic
events
two
margins:
pulsed‐age
distribution
Margin
as
predicted
discrete
tectonic
Northern
Andean
cordilleras,
more
continuous
age
westwards‐propagating
migration.
Main
Conclusions
Historical
changes
connectivity
have
influenced
Erythrinidae,
where
Neogene
cordilleras
profoundly
structured
gradients
fragmenting
aquatic
faunas
cis‐
trans‐Andean
basins
well
portions
sub‐Andean
Foreland
basin,
merging
Amazonia
onset
River.
Alternative
scenarios
also
consistent
available
palaeontological,
palaeogeographical
palaeoenvironmental
data.
American Museum Novitates,
Journal Year:
2024,
Volume and Issue:
2024(4007)
Published: Jan. 23, 2024
A
new
species
of
the
curimatid
genus
Cyphocharax
is
described
from
Rio
Xingu,
Amazon
basin.
This
readily
distinguished
congeners
by
presence
a
dark,
round
blotch
on
caudal
peduncle
and
high
density
iridophores
ventrolateral
portion
body,
resulting
in
strongly
countershaded
pattern.
Molecular
phylogenetic
analyses
support
recognition
suggest
that
it
nested
within
Curimatella
alburna
clade.
Ancestral
state
reconstruction
suggests
independent
evolutionary
origins
blotched
flanks
among
fishes.