bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2021,
Volume and Issue:
unknown
Published: Sept. 30, 2021
Abstract
The
intestines
of
animals
are
typically
colonized
by
a
complex,
relatively
stable
microbiota
that
influences
health
and
fitness,
but
the
underlying
mechanisms
colonization
remain
poorly
understood.
As
typical
animal,
fruit
fly,
Drosophila
melanogaster,
is
associated
with
consistent
set
commensal
bacterial
species,
yet
reason
for
this
consistency
unknown.
Here,
we
use
gnotobiotic
flies,
microscopy,
microbial
pulse-chase
protocols
to
show
niche
exists
within
proventriculus
region
foregut
selectively
binds
bacteria
exquisite
strain-level
specificity.
Primary
colonizers
saturate
exclude
secondary
same
strain,
initial
Lactobacillus
physically
remodels
favor
Acetobacter
.
Our
results
provide
mechanistic
framework
understanding
establishment
stability
an
intestinal
microbiome.
One-Sentence
Summary
A
strain-specific
inhabits
defined
spatial
gut
forms
niche.
Frontiers in Cellular and Infection Microbiology,
Journal Year:
2024,
Volume and Issue:
14
Published: April 23, 2024
High-fat
diets
(HFDs),
a
prevailing
daily
dietary
style
worldwide,
induce
chronic
low-grade
inflammation
in
the
central
nervous
system
and
peripheral
tissues,
promoting
variety
of
diseases
including
pathologies
associated
with
neuroinflammation.
However,
mechanisms
linking
HFDs
to
are
not
entirely
clear.
Here,
using
Drosophila
HFD
model,
we
explored
mechanism
HFD-induced
remote
tissues.
We
found
that
activated
IMD/NFκB
immune
pathway
head
through
remodeling
commensal
gut
bacteria.
Removal
microbiota
abolished
such
inflammatory
response.
Further
experiments
revealed
significantly
increased
abundance
Acetobacter
malorum
gut,
re-association
this
bacterium
was
sufficient
elicit
response
Mechanistically,
produced
greater
amount
peptidoglycan
(PGN),
well-defined
microbial
molecular
pattern
enters
circulation
remotely
activates
an
Our
results
thus
show
trigger
mediated
by
bacterial
elicits
host
Ecology and Evolution,
Journal Year:
2025,
Volume and Issue:
15(1)
Published: Jan. 1, 2025
ABSTRACT
Gut
microbiota
are
fundamental
for
healthy
animal
function,
but
the
evidence
that
host
function
can
be
predicted
from
taxonomy
remains
equivocal,
and
natural
populations
remain
understudied
compared
to
laboratory
animals.
Paired
analyses
of
covariation
in
parameters
powerful
approaches
characterise
host–microbiome
relationships
mechanistically,
especially
wild
animals
also
lab
models,
enabling
insight
into
ecological
basis
at
molecular
cellular
levels.
The
fruitfly
Drosophila
melanogaster
is
a
preeminent
model
organism,
amenable
field
investigation
by
‘omic
analyses.
Previous
work
male
D.
guts
analysed
paired
measurements
(A)
bacterial
diversity
abundance,
measured
16S
amplicon
sequencing;
(B)
gut
transcriptome,
no
signature
was
detected.
Here,
we
re‐analyse
those
data
comprehensively.
We
find
orthogonal
axes
microbial
genera,
which
correspond
differential
expression
genes.
differentially
expressed
gene
sets
were
enriched
functions
including
protein
translation,
mitochondrial
respiration,
immunity
reproduction.
Each
set
had
distinct
functional
signature,
suggesting
flies
exhibit
range
variation,
microbiome
variation.
These
findings
lay
foundation
better
connect
ecology
genetics
leading
host‐microbiome
model.
Developmental Cell,
Journal Year:
2025,
Volume and Issue:
unknown
Published: Feb. 1, 2025
Diets
composed
of
chemically
pure
components
(holidic
diets)
are
useful
for
determining
the
metabolic
roles
individual
nutrients.
For
model
organism
Drosophila
melanogaster,
existing
holidic
diets
unable
to
support
rapid
growth
characteristic
larval
stage.
Here,
we
use
a
nutrient
co-optimization
strategy
across
more
than
50
diet
variants
design
fast
development
(HolFast),
medium
tailored
and
development.
We
identify
dietary
amino
acid
ratios
optimal
developmental
speed
but
show
that
they
compromise
survival
unless
vitamins
sterols
co-optimized.
Rapid
on
HolFast
is
not
improved
by
adding
fatty
acids,
it
dependent
upon
their
de
novo
synthesis
in
fat
body
via
synthase
(FASN).
outperforms
other
diets,
supporting
rates
close
those
yeast-based
and,
under
germ-free
conditions,
identical.
has
wide
applications
nutritional
studies
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2021,
Volume and Issue:
unknown
Published: Sept. 30, 2021
Abstract
The
intestines
of
animals
are
typically
colonized
by
a
complex,
relatively
stable
microbiota
that
influences
health
and
fitness,
but
the
underlying
mechanisms
colonization
remain
poorly
understood.
As
typical
animal,
fruit
fly,
Drosophila
melanogaster,
is
associated
with
consistent
set
commensal
bacterial
species,
yet
reason
for
this
consistency
unknown.
Here,
we
use
gnotobiotic
flies,
microscopy,
microbial
pulse-chase
protocols
to
show
niche
exists
within
proventriculus
region
foregut
selectively
binds
bacteria
exquisite
strain-level
specificity.
Primary
colonizers
saturate
exclude
secondary
same
strain,
initial
Lactobacillus
physically
remodels
favor
Acetobacter
.
Our
results
provide
mechanistic
framework
understanding
establishment
stability
an
intestinal
microbiome.
One-Sentence
Summary
A
strain-specific
inhabits
defined
spatial
gut
forms
niche.