Portable microfluidic devices for monitoring antibiotic resistance genes in wastewater DOI

Rida Feng,

Kang Mao, Hua Zhang

et al.

Microchimica Acta, Journal Year: 2024, Volume and Issue: 192(1)

Published: Dec. 21, 2024

Language: Английский

Amplification-Free Detection of Mycobacterium Tuberculosis Using CRISPR-Cas12a and Graphene Field-Effect Transistors DOI
Weiqi Wang, Hongqiang Du, Changhao Dai

et al.

Nanoscale, Journal Year: 2025, Volume and Issue: unknown

Published: Jan. 1, 2025

Current molecular tests for tuberculosis (TB), such as whole genome sequencing and Xpert Mycobacterium tuberculosis/rifampicin resistance assay, exhibit limited sensitivity necessitate the pre-amplification step of target DNA. This limitation greatly increases detection time poses an increased risk infection. Here, we present a graphene field-effect transistor (GFET) based on CRISPR/Cas system detecting tuberculosis. The CRISPR/Cas12a has ability to specifically recognize cleave By integrating onto FET platform utilizing its electrical amplification capability, achieve rapid sensitive without requiring sample pre-amplification, with limit (LoD) low 2.42 × 10-18 M. Cas12a-GFET devices can differentiate 30 positive cases from 56 serum samples within 5 minutes. These findings highlight immense potential in future biological analysis clinical diagnosis.

Language: Английский

Citations

2

A CRISPR/Cas13a system based on a dumbbell-shaped hairpin combined with DNA-PAINT to establish the DCP-platform for highly sensitive detection of Hantaan virus RNA DOI
Jiayong Zhong, Ziyue Xu, Jiawei Peng

et al.

Talanta, Journal Year: 2025, Volume and Issue: 291, P. 127852 - 127852

Published: March 6, 2025

Language: Английский

Citations

1

Preconcentration and detection of SARS-CoV-2 in wastewater: A comprehensive review DOI
Yihan Yang, Jisui Tan, F. Wang

et al.

Biosensors and Bioelectronics, Journal Year: 2024, Volume and Issue: 263, P. 116617 - 116617

Published: July 30, 2024

Language: Английский

Citations

6

One-pot diagnostic methods based on CRISPR/Cas and Argonaute nucleases: strategies and perspectives DOI

Xingyu Ye,

Haoyang Wu, Jinghan Liu

et al.

Trends in biotechnology, Journal Year: 2024, Volume and Issue: 42(11), P. 1410 - 1426

Published: July 20, 2024

Language: Английский

Citations

5

A Crispr/Cas13a-Dumbbell Hairpin Dna-Paint Platform for Ultrasensitive Detection of Hantaan Virus Rna DOI
Jiayong Zhong, Ziyue Xu, Jiawei Peng

et al.

Published: Jan. 1, 2025

Language: Английский

Citations

0

Tunable control of Cas12 activity promotes universal and fast one-pot nucleic acid detection DOI Creative Commons
Zhou‐Hua Cheng,

Xiyan Luo,

Sheng-Song Yu

et al.

Nature Communications, Journal Year: 2025, Volume and Issue: 16(1)

Published: Jan. 30, 2025

The CRISPR-based detection methods have been widely applied, yet they remain limited by the non-universal nature of one-pot diagnostic approaches. Here, we report a universal fluorescent method for epidemic pathogens, delivering results within 15-20 min. This uses heparin sodium to precisely tunes cis-cleavage capability Cas12 via interference with Cas12a-crRNA binding process, thereby generating significant fluorescence due accumulation isothermal amplification products. Additionally, this assay accommodates both classic and suboptimal PAMs, as well various Cas12a subtypes such LbCas12a, AsCas12a, AapCas12b. Such robust demonstrates sensitivity specificity exceeding 95% in monkeypox pseudovirus, influenza A virus, SARS-CoV-2 from saliva or wastewater samples, when compared qPCR RT-qPCR. Moreover, cost per thousand is $0.01 $0.04 only. Collectively, fast approach based on offers potential possibilities point-of-care testing.

Language: Английский

Citations

0

Amplification-free detection of plant pathogens by improved CRISPR-Cas12a systems: a case study on phytoplasma DOI Creative Commons

Joseph R. Lagner,

Eric A. Newberry, Yazmín Rivera

et al.

Frontiers in Plant Science, Journal Year: 2025, Volume and Issue: 16

Published: March 6, 2025

CRISPR-based disease detection has the potential to profoundly change how pathogens are detected in plant materials. However, there been a lack of research directed into improving explicitly CRISPR components that define these assays. To fill this technology gap, we have designed and optimized our CRISPR-Cas12a based platform by showcasing its capability detecting pathogen group rising importance, Candidatus Phytoplasma. Most assays utilize isothermal pre-amplification steps, which may boost sensitivity yet often lead false positives. Aiming for pre-amplification-free assay maintain accuracy, screened multiple Cas12a orthologs variants found LbCas12a-Ultra be most sensitive Cas12a. We further improved system using stem-loop reporters various sizes 7nt significantly outperformed other as well commonly used linear reporters. When reporter was combined with best-performing LbCas12a-Ultra, 10-fold increase over standard LbCas12a assay. enhance coverage highly diverse phytoplasmas, tested multiplex method predicted target nearly 100% all documented phytoplasma species on NCBI. A lateral flow also developed accommodate instrument-free reagents. Our study demonstrates an wide applications can easily integrated almost any Cas12a-based boosted sensitivity.

Language: Английский

Citations

0

Integration of RPA and CRISPR-Cas13a collateral activity for one-step detection of DHAV-3: A biological macromolecule-enabled diagnostic platform DOI

Saisai Zhao,

Jiahao Zhang,

Shumin Yu

et al.

International Journal of Biological Macromolecules, Journal Year: 2025, Volume and Issue: 314, P. 144400 - 144400

Published: May 19, 2025

Language: Английский

Citations

0

Establishment and Implementation of the Point-of-Care RT-RAA-CRISPR/Cas13a Diagnostic Test for Foot-And-Mouth Disease Virus Serotype O in Pigs DOI Creative Commons
Ping Meng, Bo Ni, Chenyu Li

et al.

Viruses, Journal Year: 2025, Volume and Issue: 17(5), P. 721 - 721

Published: May 17, 2025

Foot and mouth disease virus (FMDV) is a highly pathogenic that mainly infects cloven hooved animals, such as pigs. The establishment of rapid, sensitive accurate point-of-care detection method critical for the timely identification elimination infected pigs controlling this disease. In study, RT-RAA-CRISPR/Cas13a was developed FMDV serotype O in Six pairs RT-RAA primers were designed based on conserved gene sequence O, optimal amplification reaction temperatures screened. CRISPR-derived RNA (crRNA) further target band most efficient crRNA results revealed FMDV-O-F4/R4 primer set, temperature 37 °C. Moreover, crRNA4 exhibited strongest signal among six crRNAs. established demonstrated high specificity no cross-reactivity with other common swine pathogens Senecavirus A (SVA), porcine reproductive respiratory (PRRSV), epidemic diarrhea (PEDV), circovirus type 2 (PCV2), classical fever (CSFV), pseudorabies (PRV), additionally, it observed to be sensitive, limit 19.1 copies/µL. repeatability also good. This could produce stable fluorescence good when three independent experiments yielded same results. validation test using types simulated clinical samples (including swab, tissue, serum samples) 100% concordance rate. visualized via reader or lateral flow strips (LFSs). Thus, specific expected applied rapid situ.

Language: Английский

Citations

0

CRISPR/Cas-powered nucleic acid amplification and amplification-free biosensors for public safety detection: Principles, advances and prospects DOI
Bo Yi,

Baoqing Zhou,

Donggen Zhou

et al.

Biotechnology Advances, Journal Year: 2025, Volume and Issue: unknown, P. 108609 - 108609

Published: May 1, 2025

Language: Английский

Citations

0