Intermittent fasting attenuates CNS inflammaging - rebalancing the transposonome DOI Creative Commons
Mitchell J Cummins, Ethan T Cresswell, Doug W. Smith

et al.

Research Square (Research Square), Journal Year: 2025, Volume and Issue: unknown

Published: March 12, 2025

Abstract A hallmark of CNS aging is sterile, chronic, low-grade neuroinflammation. Understanding how the develops chronic inflammation necessary to achieve extended healthspan. Characterisation neuroinflammatory molecular triggers remains limited. Interventions that reduce neuroinflammation and extend health lifespan could be useful in this regard. One such intervention intermittent fasting (IF), but IF impacts insufficiently understood. To address this, we performed deep RNA-sequencing on young, middle-aged, old, mouse regions. Additionally, sequenced spinal cord animals subject adult lifelong IF. We found most differentially expressed genes (DEGs) at middle age were region specific (~ 50–84%), whilst effect weakened 18–72%) old age, suggesting emergence a more general global profile. DEGs from all regions enriched for inflammatory immune ontologies. Surprisingly, SC was aging- neuroinflammation-impacted both ages, with by far highest number DEGs, largest net increase expression transposable elements (TEs), greatest enrichment immune-related ontologies, generally larger increases gene expression. Overall, normal upregulation sensors non-self, DNA/RNA, activation inflammasomes, cGAS-STING1 interferon response genes, across CNS. Whilst still developed an profile SC, average lower ~ 50% compared age-matched controls. IF-specific apparent, also acts separate, potentially targetable, pathways those impacted aging. Expression disease associated microglia, phagocytic exhaustion, STING1, inflammasome decreased Significantly, TE reversed decrease. In summary, find hotspot, attenuates neuroinflammaging rebalancing transposonome.

Language: Английский

Genetics of human telomere biology disorders DOI
Patrick Revy, Caroline Kannengiesser, Alison A. Bertuch

et al.

Nature Reviews Genetics, Journal Year: 2022, Volume and Issue: 24(2), P. 86 - 108

Published: Sept. 23, 2022

Language: Английский

Citations

131

Activation of human endogenous retroviruses and its physiological consequences DOI
Nicholas Dopkins, Douglas F. Nixon

Nature Reviews Molecular Cell Biology, Journal Year: 2023, Volume and Issue: 25(3), P. 212 - 222

Published: Oct. 23, 2023

Language: Английский

Citations

57

Transposon–host arms race: a saga of genome evolution DOI
Yuka W. Iwasaki, Keisuke Shoji,

Shinichi Nakagwa

et al.

Trends in Genetics, Journal Year: 2025, Volume and Issue: unknown

Published: Feb. 1, 2025

Language: Английский

Citations

2

The sound of silence: mechanisms and implications of HUSH complex function DOI Creative Commons
Marta Seczyńska, Paul J. Lehner

Trends in Genetics, Journal Year: 2023, Volume and Issue: 39(4), P. 251 - 267

Published: Feb. 6, 2023

The vertebrate genome is under constant threat of invasion by genetic parasites. Whether the host can immediately recognize and respond to invading elements has been unclear. discovery human silencing hub (HUSH) complex, finding that it provides immediate protection from products reverse transcription, have important implications for mammalian evolution. In this review, we summarize recent insights into HUSH function describe how cellular introns provide a novel means self–nonself discrimination, allowing transcriptionally repress broad range intronless elements. We discuss contributes evolution, highlight studies reporting critical role in development implicating control immune signaling cancer progression.

Language: Английский

Citations

39

ARS2 instructs early transcription termination-coupled RNA decay by recruiting ZC3H4 to nascent transcripts DOI Creative Commons
Jérôme O. Rouvière, Anna Salerno-Kochan, Søren Lykke‐Andersen

et al.

Molecular Cell, Journal Year: 2023, Volume and Issue: 83(13), P. 2240 - 2257.e6

Published: June 16, 2023

Language: Английский

Citations

32

Co-transcriptional genome surveillance by HUSH is coupled to termination machinery DOI Creative Commons
Andrew Spencley,

Shiran Bar,

Tomek Swigut

et al.

Molecular Cell, Journal Year: 2023, Volume and Issue: 83(10), P. 1623 - 1639.e8

Published: May 1, 2023

The HUSH complex recognizes and silences foreign DNA such as viruses, transposons, transgenes without prior exposure to its targets. Here, we show that endogenous targets of the fall into two distinct classes based on presence or absence H3K9me3. These are further distinguished by their transposon content differential response loss HUSH. A de novo genomic rearrangement at Sox2 locus induces a switch from H3K9me3-independent H3K9me3-associated targeting, resulting in silencing. We demonstrate interacts with termination factor WDR82 and—via component MPP8—with nascent RNA. accumulates sites high RNAPII occupancy including long exons transcription manner dependent CPSF. Together, our results uncover functional diversity this vertebrate-specific exploits evolutionarily ancient machinery for co-transcriptional chromatin targeting genome surveillance.

Language: Английский

Citations

30

Diverse heterochromatin states restricting cell identity and reprogramming DOI Creative Commons
Ryan L. McCarthy, Jingchao Zhang, Kenneth S. Zaret

et al.

Trends in Biochemical Sciences, Journal Year: 2023, Volume and Issue: 48(6), P. 513 - 526

Published: March 27, 2023

Language: Английский

Citations

24

The homeobox transcription factor DUXBL controls exit from totipotency DOI
María Vega-Sendino, Felipe F. Lüttmann,

Teresa Olbrich

et al.

Nature Genetics, Journal Year: 2024, Volume and Issue: 56(4), P. 697 - 709

Published: March 20, 2024

Language: Английский

Citations

15

Nuclear mRNA decay: regulatory networks that control gene expression DOI
Xavier Rambout, Lynne E. Maquat

Nature Reviews Genetics, Journal Year: 2024, Volume and Issue: unknown

Published: April 18, 2024

Language: Английский

Citations

13

Keep quiet: the HUSH complex in transcriptional silencing and disease DOI
Iris Müller, Kristian Helin

Nature Structural & Molecular Biology, Journal Year: 2024, Volume and Issue: 31(1), P. 11 - 22

Published: Jan. 1, 2024

Language: Английский

Citations

11