bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Oct. 31, 2024
Abstract
Background
and
Objectives
TBCK
syndrome
is
a
rare
fatal
pediatric
neurodegenerative
disease
caused
by
biallelic
loss-of-function
mutations
in
the
gene.
Previous
studies
our
lab
others
have
implicated
mTOR,
autophagy,
lysosomes,
intracellular
mRNA
transport,
however
exact
primary
pathologic
mechanism
unknown.
This
gap
has
prevented
development
of
targeted
therapies.
Methods
We
employed
human
neural
progenitor
cell
line
(NPC),
ReNcell
VM,
which
can
differentiate
into
neurons
astrocytes,
to
understand
role
mTORC1
activity
neuronal
autophagy
cellular
mechanisms
pathology.
used
shRNA
technology
knockdown
ReNcells.
Results
These
data
showed
that
loss
did
not
inhibit
neither
NPC
nor
neurons.
Additionally,
analysis
eight
patient-derived
cells
knock
down
HeLa
inhibition
inconsistent
across
different
patients
types.
ReNcells
affected
differentiation
astrocytes.
Specifically,
defects
are
coupled
cycle
increased
death
during
differentiation.
RNAseq
indicated
downregulation
several
neurodevelopmental
pathways.
observed
higher
number
LC3-positive
vesicles
soma
neurites
cells.
Further,
altered
mitochondrial
dynamics
membrane
potential
NPC,
found
partial
rescue
with
fission
inhibitor
mdivi-
1.
Discussion
work
outlines
new
Human
Cell
Model
for
TBCK-related
neurodegeneration
essential
health
inhibitor.
data,
along
illuminate
provide
possible
novel
therapeutic
avenue
patients.
Annual Review of Cell and Developmental Biology,
Journal Year:
2022,
Volume and Issue:
38(1), P. 155 - 178
Published: July 29, 2022
Eukaryotic
cells
across
the
tree
of
life
organize
their
subcellular
components
via
intracellular
transport
mechanisms.
In
canonical
transport,
myosin,
kinesin,
and
dynein
motor
proteins
interact
with
cargos
adaptor
move
along
filamentous
actin
or
microtubule
tracks.
contrast
to
this
mode,
hitchhiking
is
a
newly
discovered
mode
in
which
cargo
attaches
itself
an
already-motile
rather
than
directly
associating
protein
itself.
Many
including
messenger
RNAs,
complexes,
organelles
hitchhike
on
membrane-bound
cargos.
Hitchhiking-like
behaviors
have
been
shown
impact
cellular
processes
local
translation,
long-distance
signaling,
organelle
network
reorganization.
Here,
we
review
instances
fungal,
animal,
plant
discuss
potential
evolutionary
importance
these
different
contexts.
Microbiological Research,
Journal Year:
2024,
Volume and Issue:
282, P. 127653 - 127653
Published: Feb. 23, 2024
In
multinuclear
and
multicellular
filamentous
fungi
little
is
known
about
how
mRNAs
encoding
secreted
enzymes
are
transcribed
localized
spatiotemporally.
To
better
understand
this
process
we
analyzed
mRNA
GlaA,
a
glucoamylase
in
large
amounts
by
the
industrial
fungus
Aspergillus
oryzae,
MS2
system,
which
can
be
visualized
living
cells.
We
found
that
glaA
was
significantly
near
hyphal
tip
septum,
sites
of
protein
secretion,
polarity-dependent
expression
localization
manners.
also
revealed
exhibits
long-range
dynamics
vicinity
endoplasmic
reticulum
(ER)
manner
dependent
on
microtubule
motor
proteins
kinesin-1
kinesin-3,
but
independent
early
endosomes.
Moreover,
elucidated
although
to
stress
granules
(SGs)
processing
bodies
(PBs)
under
high
temperature,
not
seen
ER
stress,
suggesting
there
different
regulatory
mechanisms
SG
PB
temperature
stress.
Collectively,
study
uncovers
dynamic
mechanism
secretory
enzyme
fungi.
American Journal of Medical Genetics Part A,
Journal Year:
2025,
Volume and Issue:
unknown
Published: Jan. 25, 2025
ABSTRACT
TBCK
(TBC1
Domain‐Containing
Kinase)
encodes
a
protein
playing
role
in
actin
organization
and
cell
growth/proliferation
via
the
mTOR
signaling
pathway.
Deleterious
biallelic
variants
cause
Hypotonia,
infantile,
with
psychomotor
retardation
characteristic
facies
3.
We
report
on
three
affected
sibs,
also
displaying
cardiac
malformations.
The
parents,
consanguineous
couple
of
first
cousins,
were
referred
to
schedule
invasive
diagnosis
for
their
sixth
pregnancy.
They
known
carry
pathogenic
c.1532G>A
variant.
variant
was
originally
identified
homozygosity
second
children
couple,
both
affected.
One
presented
right‐sided
aortic
arch.
other
had
Tetralogy
Fallot.
Present
pregnancy
ultrasound
revealed
cystic
hygroma
hypoplastic
nasal
bone,
not
previously
reported
this
condition.
Chromosomal
microarray
analysis
found
no
imbalance
8.6%
runs
homozygosity.
Whole
exome
sequencing
confirmed
without
additional
or
candidate
variants.
Fetal
echocardiography
left
ventricle
arch
hypoplasia.
opted
termination.
Fetopsy
sonographic
findings
aorta
arising
from
right
corpus
callosum
agenesis.
Interestingly,
phenotype
segregates
involvement
might
be
considered
new
feature
causing
The FASEB Journal,
Journal Year:
2025,
Volume and Issue:
39(5)
Published: March 1, 2025
Abstract
Spontaneous
mouse
mutants
have
helped
define
genetic
contributions
to
many
phenotypes.
Here
we
report
a
spontaneous
Novel
Ataxic
Phenotype
in
mice.
Ataxia
findings
were
evident
at
post‐natal
day
11
NAP
mice
and
rapidly
worsened,
resulting
preweaning
lethality.
Using
genome
sequencing
genome‐wide
mapping,
identified
3′
donor
splice
variant
exon
14
of
Myo5a
,
encoding
an
actin‐based
motor
protein.
The
(c.1752g>a)
excises
ablates
MYO5A
protein
expression,
which
is
implicated
intracellular
transport
Griscelli
syndrome
type
I
humans.
displayed
expansion
PAX6‐positive
cells
the
external
granule
layer
cerebellum,
mass
spectrometry
analysis
cerebellar
extracts
uncovered
differentially
abundant
proteins
involved
short‐range
organelle
transport,
specifically
with
early
endosomes.
lysates
primary
neurons,
provide
evidence
for
interaction
between
ANKFY1,
known
effector
endosomal
protein,
RAB5A.
We
also
found
neurons
from
had
elongated
mitochondria,
linking
mitochondrial
homeostasis.
This
allele
provides
new
insight
into
function
developmental
neuropathology.
Current Opinion in Genetics & Development,
Journal Year:
2025,
Volume and Issue:
92, P. 102332 - 102332
Published: March 7, 2025
Brain
function
requires
precise
spatiotemporal
regulation
of
the
neuronal
proteome.
To
allow
adaptation
proteome
in
distal
outposts
neurons,
mRNAs
are
transported
into
neurites
for
localized
translation.
This
mRNA
localization
and
local
translation
is
crucial
neuron
maintenance,
dysregulation
these
processes
can
contribute
to
neurological
disease.
Recently,
organelles
have
emerged
as
key
players
regulating
dendrites
axons.
In
this
review,
we
discuss
current
evidence
open
questions
organelle-mediated
localization.
We
highlight
an
emerging
model
which
multiple
create
orchestrate
a
subcellular
microenvironment
that
support
selective
seems
essential
maintaining
organellar
health,
mutations
many
involved
proteins
lead
various
disorders.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2025,
Volume and Issue:
unknown
Published: March 7, 2025
ABSTRACT
Monogenic
pediatric
neurodegenerative
disorders
can
reveal
fundamental
cellular
mechanisms
that
underlie
selective
neuronal
vulnerability.
TBCK-Encephaloneuronopathy
(TBCKE)
is
a
rare
autosomal
recessive
disorder
caused
by
stop-gain
variants
in
the
TBCK
gene.
Clinically,
patients
show
evidence
of
profound
neurodevelopmental
delays,
but
also
symptoms
progressive
encephalopathy
and
motor
neuron
disease.
Yet,
physiological
role
protein
remains
unclear.
We
report
human
TBCKE
model,
derived
from
iPSCs
homozygous
for
Boricua
variant
(p.R126X).
Using
unbiased
proteomic
analyses
neurons,
we
find
interacts
with
PPP1R21,
C12orf4,
Cryzl1,
consistent
being
part
FERRY
mRNA
transport
complex.
Loss
leads
to
depletion
C12ORF4
levels
across
multiple
cell
types,
suggesting
may
play
regulating
at
least
some
members
preferentially,
not
exclusively,
localizes
surface
endolysosomal
vesicles
colocalize
lysosomes.
Furthermore,
TBCK-deficient
neurons
have
reduced
content
axonal
compartment
relative
soma.
lysosomal
dynein/dynactin
adapter
JIP4,
which
functionally
exhibiting
striking
retrograde
trafficking
defects.
Hence,
our
work
reveals
mediate
mRNA,
particularly
along
lysosomes
compartments.
TBCK-deficiency
compartment-specific
defects
likely
contribute
preferential
susceptibility
neurodegeneration.
Biology Open,
Journal Year:
2025,
Volume and Issue:
14(3)
Published: March 10, 2025
The
five-subunit
endosomal
Rab5
and
RNA/ribose
intermediary
(FERRY)
complex
is
a
newly
described
protein
consisting
of
TBCK,
PPP1R21,
FERRY3
(previously
C12orf4),
CRYZL1,
GATD1.
FERRY
proposed
to
function
as
effector
shuttle
mRNA
the
cell
periphery
for
local
translation,
process
especially
important
in
cells
with
far
reaching
processes.
Interestingly,
three
members
are
associated
ultra-rare
neurogenetic
disorders.
Mutation
TBCK
causes
syndrome,
mutation
PPP1R21
PPP1R21-related
intellectual
disability,
results
an
autosomal
recessive
disability.
Neurologic
disorders
have
yet
be
GATD1
or
CRYZL1.
Here,
we
provide
review
each
complex-related
neurologic
disorder
draw
clinical
comparisons
between
disease
states.
We
also
discuss
data
from
current
cellular
animal
models
available
study
these
disorders,
which
notably
disparate
scattered
across
different
types
systems.
Taken
together,
explore
possibility
that
diseases
may
represent
one
shared
class,
could
further
understood
by
combining
comparing
known
information
about
individual
disease.
If
true,
this
substantial
implications
on
our
understanding
role
treatment
strategies
affected
individuals,
allowing
researchers,
clinicians,
patient
organizations
maximize
utility
research
efforts
resources
support
patients
Frontiers in Biophysics,
Journal Year:
2025,
Volume and Issue:
3
Published: April 4, 2025
TBCK
is
an
essential
protein
in
neurodevelopment.
Mutations
the
gene
are
associated
with
Syndrome,
a
genetic
neurological
disorder
characterized
by
global
developmental
delay.
enigmatic
multidomain
that
contains
pseudokinase
domain,
TBC
(Tre2-Bub2-Cdc16)
and
rhodanese-like
domain.
Emerging
evidence
increasingly
links
to
multiple
cellular
processes,
including
mTOR
signaling,
autophagy,
lysosomal
function,
mitochondrial
maintenance.
This
review
consolidates
recent
advances
our
understanding
of
TBCK,
emphasizing
comparative
sequence
analysis,
structural
modeling,
its
functions.
Our
analysis
shows
both
kinase
domain
likely
lack
catalytic
activity
instead
primarily
function
as
scaffolds
or
regulatory
domains.
The
all
conserved
residues,
suggesting
it
may
act
GTPase-activating
(GAP).
These
functional
hypotheses
provide
foundation
for
further
investigations
into
TBCK’s
physiological
pathological
roles.
Journal of Cell Science,
Journal Year:
2025,
Volume and Issue:
138(9)
Published: May 1, 2025
ABSTRACT
Mitochondria
are
dynamic
and
heterogeneous
organelles
that
rewire
their
network
metabolic
functions
in
response
to
changing
cellular
needs.
To
this
end,
mitochondria
integrate
a
plethora
of
incoming
signals
influence
cell
fate
survival.
A
crucial
highly
regulated
node
cell–mitochondria
communication
is
the
translation
nuclear-encoded
mitochondrial
mRNAs.
By
controlling
monitoring
spatio-temporal
these
mRNAs,
cells
can
rapidly
adjust
function
meet
demands,
optimise
ATP
production
regulate
organelle
biogenesis
turnover.
In
Review,
we
focus
on
how
RNA-binding
proteins
recognise
mRNAs
acutely
modulate
rate
nutrient
availability.
We
further
discuss
relevance
localised
for
subsets
polarised
cells.
Finally,
highlight
quality
control
mechanisms
monitor
process
at
surface
connections
mitophagy
stress
responses.
propose
processes
collectively
contribute
specialisation
signalling
function.
Biochemical Journal,
Journal Year:
2024,
Volume and Issue:
481(3), P. 119 - 139
Published: Jan. 29, 2024
The
sub-compartmentalization
of
cellular
processes
is
especially
important
in
highly
polarized
cells
such
as
neurons,
their
function
rely
on
complex
morphology.
association
RNAs
to
the
mitochondrial
surface
a
conserved
feature
from
yeast
humans
and
it
regulates
several
aspects
physiology
and,
hence,
functions.
In
mitochondria
are
emerging
platforms
for
RNA
transport
local
protein
translation.
this
review,
we
discuss
how
localization
helps
sustain
function,
can
support
homeostasis,
distal
parts
neuron,
neuronal
activity.