Advances in CircRNAs in the Past Decade: Review of CircRNAs Biogenesis, Regulatory Mechanisms, and Functions in Plants DOI Open Access

Dongqin Zhang,

Yue Ma, Misbah Naz

et al.

Genes, Journal Year: 2024, Volume and Issue: 15(7), P. 958 - 958

Published: July 21, 2024

Circular RNA (circRNA) is a type of non-coding with multiple biological functions. Whole circRNA genomes in plants have been identified, and circRNAs demonstrated to be widely present highly expressed various plant tissues organs. CircRNAs are stable conserved plants, exhibit tissue specificity developmental stage specificity. often interact other biomolecules, such as miRNAs proteins, thereby regulating gene expression, interfering function, affecting growth development or response environmental stress. less studied than animals, their regulatory mechanisms biogenesis molecular functions not fully understood. A variety involved responding This review focuses on the circRNAs, well during growth, development, stress responses including discussion research prospects. Understanding generation challenging but important topic field it can provide insights into life activities biotic abiotic stresses new strategies for breeding pest control.

Language: Английский

Genomic identification of the NF-Y gene family in apple and functional analysis of MdNF-YB18 involved in flowering transition DOI
Cai Gao,

Pengyan Wei,

Zushu Xie

et al.

Molecular Breeding, Journal Year: 2024, Volume and Issue: 45(1)

Published: Dec. 24, 2024

Language: Английский

Citations

6
RNA m6A modification meets plant hormones DOI
Lisha Shen, Hao Yu

Nature Plants, Journal Year: 2025, Volume and Issue: unknown

Published: March 28, 2025

Language: Английский

Citations

0
Mapping of identity by descent reveals genes shaping morphology and biological traits in the cultivated lettuce varieties during the long-term crossbreeding DOI
Qianqian Zhang,

Bo Cui,

Xinyu Dong

et al.

Theoretical and Applied Genetics, Journal Year: 2025, Volume and Issue: 138(5)

Published: April 11, 2025

Language: Английский

Citations

0
Analysis of the root mRNA interactome from canola and rice: crop species that span the eudicot-monocot boundary DOI

Chris R. Joshna,

Dilini Atugala,

Daniela Espinoza

et al.

Plant Science, Journal Year: 2025, Volume and Issue: unknown, P. 112525 - 112525

Published: April 1, 2025

Language: Английский

Citations

0
Identification of uranyl-binding proteins in Arabidopsis thaliana cells exposed to uranium: Insights from a metalloproteomic analysis and characterization of Glycine-Rich RNA-binding Protein 7 (GRP7) DOI

Benoît Revel,

Adrien Favier,

Jacqueline Martin-Laffon

et al.

bioRxiv (Cold Spring Harbor Laboratory), Journal Year: 2025, Volume and Issue: unknown

Published: April 28, 2025

Abstract Uranium (U) is a naturally occurring radionuclide, chemotoxic for living organisms. To identify proteins that could be cellular targets U in plants, we used metalloproteomic approaches combining column chromatographic fractionation analyses, protein identification by high-resolution mass spectrometry shotgun proteomics, and metal quantification induced coupled plasma spectrometry. We identified 57 candidate uranyl (U(VI)) binding cultured Arabidopsis thaliana cells. One of these proteins, the Glycine-Rich RNA-binding Protein 7 (GRP7) involved various developmental processes responses to biotic abiotic stress. Recombinant GRP7 was purified from overproducing bacteria subjected further biochemical characterization. First, showed binds U(VI) with 1:2 (protein:metal) stoichiometry vitro . Next, analyzed its structural properties solution-state nuclear magnetic resonance spectroscopy. This allowed us gain insight into molecular dynamics protein-metal interaction residues U(VI)-binding two sites. Finally, observed interferes nucleic acid domain, suggesting contributes toxicity plants. HIGHLIGHTS uranyl-binding were cells exposed uranyl, which GRP7. In , recombinant 2 ions within RNA recognition motif domain. Amino both sites identified. Competition between specific oligonucleotide suggests implication uranium toxicity, as target.

Language: Английский

Citations

0
Epitranscriptomic regulation through phase separation in plants DOI
Lisha Shen

Trends in Plant Science, Journal Year: 2024, Volume and Issue: unknown

Published: Dec. 1, 2024

Language: Английский

Citations

1
Advances in CircRNAs in the Past Decade: Review of CircRNAs Biogenesis, Regulatory Mechanisms, and Functions in Plants DOI Open Access

Dongqin Zhang,

Yue Ma, Misbah Naz

et al.

Genes, Journal Year: 2024, Volume and Issue: 15(7), P. 958 - 958

Published: July 21, 2024

Circular RNA (circRNA) is a type of non-coding with multiple biological functions. Whole circRNA genomes in plants have been identified, and circRNAs demonstrated to be widely present highly expressed various plant tissues organs. CircRNAs are stable conserved plants, exhibit tissue specificity developmental stage specificity. often interact other biomolecules, such as miRNAs proteins, thereby regulating gene expression, interfering function, affecting growth development or response environmental stress. less studied than animals, their regulatory mechanisms biogenesis molecular functions not fully understood. A variety involved responding This review focuses on the circRNAs, well during growth, development, stress responses including discussion research prospects. Understanding generation challenging but important topic field it can provide insights into life activities biotic abiotic stresses new strategies for breeding pest control.

Language: Английский

Citations

0