Studies in computational intelligence, Journal Year: 2024, Volume and Issue: unknown, P. 427 - 463
Published: Jan. 1, 2024
Language: Английский
Studies in computational intelligence, Journal Year: 2024, Volume and Issue: unknown, P. 427 - 463
Published: Jan. 1, 2024
Language: Английский
Critical Reviews in Oncology/Hematology, Journal Year: 2025, Volume and Issue: unknown, P. 104653 - 104653
Published: Feb. 1, 2025
Language: Английский
Citations
2Nature Communications, Journal Year: 2024, Volume and Issue: 15(1)
Published: Aug. 2, 2024
Abstract High-throughput image-based profiling platforms are powerful technologies capable of collecting data from billions cells exposed to thousands perturbations in a time- and cost-effective manner. Therefore, has been increasingly used for diverse biological applications, such as predicting drug mechanism action or gene function. However, batch effects severely limit community-wide efforts integrate interpret collected across different laboratories equipment. To address this problem, we benchmark ten high-performing single-cell RNA sequencing (scRNA-seq) correction techniques, representing approaches, using newly released Cell Painting dataset, JUMP. We focus on five scenarios with varying complexity, ranging batches prepared single lab over time imaged microscopes multiple labs. find that Harmony Seurat RPCA noteworthy, consistently ranking among the top three methods all tested while maintaining computational efficiency. Our proposed framework, benchmark, metrics can be assess new future. This work paves way improvements enable community make best use public scientific discovery.
Language: Английский
Citations
13Nature Methods, Journal Year: 2024, Volume and Issue: 21(10), P. 1775 - 1777
Published: Sept. 2, 2024
Language: Английский
Citations
12Journal of Imaging, Journal Year: 2025, Volume and Issue: 11(2), P. 59 - 59
Published: Feb. 15, 2025
Artificial intelligence (AI) transforms image data analysis across many biomedical fields, such as cell biology, radiology, pathology, cancer and immunology, with object detection, feature extraction, classification, segmentation applications. Advancements in deep learning (DL) research have been a critical factor advancing computer techniques for mining. A significant improvement the accuracy of detection algorithms has achieved result emergence open-source software innovative neural network architectures. Automated now enables extraction quantifiable cellular spatial features from microscope images cells tissues, providing insights into organization various diseases. This review aims to examine latest AI DL mining microscopy images, aid biologists who less background knowledge machine (ML), incorporate ML models focus images.
Language: Английский
Citations
1Discover Chemistry., Journal Year: 2025, Volume and Issue: 2(1)
Published: April 15, 2025
Language: Английский
Citations
0Best Practice & Research Clinical Rheumatology, Journal Year: 2024, Volume and Issue: unknown, P. 102006 - 102006
Published: Sept. 1, 2024
Language: Английский
Citations
1Elsevier eBooks, Journal Year: 2024, Volume and Issue: unknown
Published: Jan. 1, 2024
Language: Английский
Citations
0Studies in computational intelligence, Journal Year: 2024, Volume and Issue: unknown, P. 427 - 463
Published: Jan. 1, 2024
Language: Английский
Citations
0