Can We Use Functional Annotation of Prokaryotic Taxa (FAPROTAX) to Assign the Ecological Functions of Soil Bacteria?

Applied Sciences, Journal Year: 2021, Volume and Issue: 11(2), P. 688 - 688

Published: Jan. 12, 2021

FAPROTAX is a promising tool for predicting ecological relevant functions of bacterial and archaeal taxa derived from 16S rRNA amplicon sequencing. The database was initially developed to predict the function marine species using standard microbiological references. This study, however, has attempted access application in soil environments. We hypothesized that compatible with terrestrial ecosystems. potential use assign bacteria investigated meta-analysis our newly designed experiments. Soil samples two major ecosystems, including agricultural land forest, were collected. Bacterial taxonomy analyzed Illumina sequencing gene assigned by FAPROTAX. presence all functionally OTUs (Operation Taxonomic Units) manually checked peer-reviewed articles as well microbiology books. Overall, we showed sample source not predominant factor limited FAPROTAX, but poor taxonomic identification was. proportion between aquatic non-aquatic ecosystems significantly different (p > 0.05). There strong significant correlations (σ = 0.90–0.95, p < 0.01) number genus or order level OTUs. After manual verification, found more than 97% have previously been detected potentially performed forest soils. further provided information regarding capable N-fixation, P K solubilization, which are three main important elements systems can be integrated increase Consequently, concluded used fast-functional screening grouping data its performance could enhanced through improving functional reference databases.

Language: Английский

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Relating bacterial dynamics and functions to gaseous emissions during composting of kitchen and garden wastes

The Science of The Total Environment, Journal Year: 2021, Volume and Issue: 767, P. 144210 - 144210

Published: Jan. 2, 2021

Language: Английский

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Coupling effects of nitrate reduction and sulfur oxidation in a subtropical marine mangrove ecosystem with Spartina alterniflora invasion

The Science of The Total Environment, Journal Year: 2022, Volume and Issue: 862, P. 160930 - 160930

Published: Dec. 13, 2022

Language: Английский

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Insight into biofilm formation of wastewater treatment processes: Nitrogen removal performance and biological mechanisms

The Science of The Total Environment, Journal Year: 2023, Volume and Issue: 903, P. 166550 - 166550

Published: Aug. 24, 2023

Language: Английский

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Iron plaque formation and its effect on key elements cycling in constructed wetlands: Functions and outlooks

Water Research, Journal Year: 2023, Volume and Issue: 235, P. 119837 - 119837

Published: March 6, 2023

Language: Английский

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Managing environmental contamination through phytoremediation by invasive plants: A review

Ecological Engineering, Journal Year: 2019, Volume and Issue: 138, P. 28 - 37

Published: July 16, 2019

Language: Английский

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Soil fertility and crop production are fostered by micro-nano bubble irrigation with associated changes in soil bacterial community

Soil Biology and Biochemistry, Journal Year: 2019, Volume and Issue: 141, P. 107663 - 107663

Published: Nov. 10, 2019

Language: Английский

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Archaeal and bacterial communities assembly and co-occurrence networks in subtropical mangrove sediments under Spartina alterniflora invasion

Environmental Microbiome, Journal Year: 2021, Volume and Issue: 16(1)

Published: May 3, 2021

Abstract Background Mangrove ecosystems are vulnerable due to the exotic Spartina alterniflora ( S. ) invasion in China. However, little is known about mangrove sediment microbial community assembly processes and interactions under invasion. Here, we investigated co-occurrence networks of archaeal bacterial communities along coastlines Fujian province, southeast Results Assembly overall was driven predominantly by stochastic processes, relative role stochasticity stronger for bacteria than archaea. Co-occurrence network analyses showed that structure more complex The keystone taxa often had low abundances (conditionally rare taxa), suggesting abundance may significantly contribute stability. Moreover, increased drift process (part processes), improved complexity stability, but decreased stability bacteria. This could be attributed influenced diversity dispersal ability, as well soil environmental conditions. Conclusions study fills a gap patterns both archaea ecosystem Thereby provides new insights plant on biogeographic distribution patterns.

Language: Английский

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Distinct Community Assembly Processes of Abundant and Rare Soil Bacteria in Coastal Wetlands along an Inundation Gradient

mSystems, Journal Year: 2020, Volume and Issue: 5(6)

Published: Dec. 21, 2020

Coastal wetlands are one of the important ecosystems that play a crucial role in regulation climate change. Rare taxa (RT) exist habitat along with abundant (AT).

Language: Английский

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Factors affecting seasonal variation of microbial community structure in Hulun Lake, China

The Science of The Total Environment, Journal Year: 2021, Volume and Issue: 805, P. 150294 - 150294

Published: Sept. 11, 2021

Language: Английский

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