Seasonal surveillance of various pathogenic viruses in wastewater using a high-throughput PCR system and comparison of two concentration methods DOI Creative Commons

Prunelle Waldman,

Audrey Fraisse,

Maï-Lan Tran

et al.

The Science of The Total Environment, Journal Year: 2025, Volume and Issue: 978, P. 179362 - 179362

Published: April 19, 2025

In recent years, the analysis of viruses in wastewater has become a recognized method to monitor circulation pathogenic within populations. This non-invasive and integrated approach is all more strategic as many viral pathogens can be released sewage. There currently no standard for virological wastewater, various protocols have been developed concentrate detect this matrix. study aims develop high-throughput qPCR detection system describe occurrence 30 human enteric respiratory influent effluent samples collected Paris area during two periods 2023. The influence concentration (ultracentrifugation or aluminium hydroxide adsorption-precipitation) recovery from was also investigated. ultracentrifugation-based allowed higher (4.95-100 % versus 0.77-33 precipitation-based method), especially waters. PCR array revealed presence viruses, with marked seasonal variations mainly viruses. particularly suitable rapid, sensitive, specific multiple wastewater.

Language: Английский

Municipal and neighbourhood level wastewater surveillance and subtyping of an influenza virus outbreak DOI Creative Commons
Élisabeth Mercier, Patrick M. D’Aoust, Ocean Thakali

et al.

Scientific Reports, Journal Year: 2022, Volume and Issue: 12(1)

Published: Sept. 22, 2022

Recurrent influenza epidemics and pandemic potential are significant risks to global health. Public health authorities use clinical surveillance locate monitor influenza-like cases outbreaks mitigate hospitalizations deaths. Currently, integration of is the only reliable method for reporting types subtypes warn emergent strains. The utility wastewater (WWS) during COVID-19 as a less resource intensive replacement or complement has been predicated on analyzing viral fragments in wastewater. We show here that virus targets stable partitions favorably solids fraction. By quantifying, typing, subtyping municipal primary sludge community outbreak, we forecasted citywide flu outbreak with 17-day lead time provided population-level near real-time feasibility WWS at neighbourhood levels real using minimal resources infrastructure.

Language: Английский

Citations

110

Wastewater Surveillance for Infectious Disease: A Systematic Review DOI
Pruthvi Kilaru, Dustin Hill, Kathryn Anderson

et al.

American Journal of Epidemiology, Journal Year: 2022, Volume and Issue: 192(2), P. 305 - 322

Published: Oct. 13, 2022

Abstract Wastewater surveillance for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has been shown to be a valuable source of information regarding SARS-CoV-2 transmission and disease 2019 (COVID-19) cases. Although the method used several decades track other infectious diseases, there not comprehensive review outlining all pathogens that have surveilled through wastewater. Herein we identify diseases previously studied via wastewater prior COVID-19 pandemic. Infectious were identified in 100 studies across 38 countries, as themes how measures linked. Twenty-five separate pathogen families included studies, with majority examining from family Picornaviridae, including polio nonpolio enteroviruses. Most did link what was found transmission. Among those did, value reported varied by study. should considered potential public health tool many diseases. can improved incorporating at population-level incidence hospitalizations.

Language: Английский

Citations

108

Recent progress on wastewater-based epidemiology for COVID-19 surveillance: A systematic review of analytical procedures and epidemiological modeling DOI Open Access
Stéfano Ciannella, Cristina González-Fernández, Jenifer Gómez‐Pastora

et al.

The Science of The Total Environment, Journal Year: 2023, Volume and Issue: 878, P. 162953 - 162953

Published: March 21, 2023

Language: Английский

Citations

60

Simultaneous detection of SARS-CoV-2, influenza A, respiratory syncytial virus, and measles in wastewater by multiplex RT-qPCR DOI Open Access
Emalie K. Hayes, Madison Gouthro, Jason J. LeBlanc

et al.

The Science of The Total Environment, Journal Year: 2023, Volume and Issue: 889, P. 164261 - 164261

Published: May 17, 2023

Language: Английский

Citations

35

Prediction of COVID-19 positive cases, a nation-wide SARS-CoV-2 wastewater-based epidemiology study DOI Open Access
Veljo Kisand, Peeter Laas, Kadi Palmik

et al.

Water Research, Journal Year: 2023, Volume and Issue: 231, P. 119617 - 119617

Published: Jan. 18, 2023

Language: Английский

Citations

24

Comparison of RT-ddPCR and RT-qPCR platforms for SARS-CoV-2 detection: Implications for future outbreaks of infectious diseases DOI Creative Commons
Jiahui Ding, Xiaoqing Xu, Yu Deng

et al.

Environment International, Journal Year: 2024, Volume and Issue: 183, P. 108438 - 108438

Published: Jan. 1, 2024

The increased frequency of human infectious disease outbreaks caused by RNA viruses worldwide in recent years calls for enhanced public health surveillance better future preparedness. Wastewater-based epidemiology (WBE) is emerging as a valuable epidemiological tool providing timely population-wide prevention and response complementary to the current clinical system. Here, we compared analytical performance practical applications between predominant molecular detection methods RT-qPCR RT-ddPCR on SARS-CoV-2 wastewater surveillance. When pure viral was tested, exhibited superior quantification accuracy at higher concentration levels achieved more sensitive with reduced variation low levels. Furthermore, consistently demonstrated robust accurate measurement either background matrix or presence mismatches target regions consensus assay. Additionally, detecting mock variant samples, found that outperformed virus genotyping targeting specific loci signature mutations allele-specific (AS) assays, especially allele frequencies concentrations, which possibility low-prevalence population. Our study provides insights method selection WBE outbreaks.

Language: Английский

Citations

15

Examining the stability of viral RNA and DNA in wastewater: Effects of storage time, temperature, and freeze-thaw cycles DOI Creative Commons
Rachel C. Williams, William Bernard Perry, Kathryn Lambert-Slosarska

et al.

Water Research, Journal Year: 2024, Volume and Issue: 259, P. 121879 - 121879

Published: June 3, 2024

Wastewater-based epidemiology (WBE) has been demonstrably successful as a relatively unbiased tool for monitoring levels of SARS-CoV-2 virus circulating in communities during the COVID-19 pandemic. Accumulated biobanks wastewater samples allow retrospective exploration spatial and temporal trends public health indicators such chemicals, viruses, antimicrobial resistance genes, possible emergence novel human or zoonotic pathogens. We investigated resilience to time, temperature, freeze-thaw cycles, plus optimal storage conditions maintain stability genetic material (RNA/DNA) viral +ssRNA (Envelope - E, Nucleocapsid N Spike protein S genes SARS-CoV-2), dsRNA (Phi6 phage) circular dsDNA (crAssphage) wastewater. Samples consisted (i) processed extracted samples, (ii) distilled water (iii) raw, unprocessed samples. were stored at -80 °C, -20 4 20 °C 10 days, going through up cycles (once per day). Sample was measured using reverse transcription quantitative PCR, automated electrophoresis, short-read whole genome sequencing. Exploring different areas demonstrated that gene showed greater sensitivity than E genes. Investigating surrogate normalisation viruses Phi6 remains stable comparison laboratory setting crAssphage resilient temperature variation. Recovery raw significantly when which supported by sequencing data all both time negatively impacted metrics. Historical extracts re-quantified 12, 14 16 months after original quantification no major changes. This study highlights importance fast processing extraction following are robust range temperatures.

Language: Английский

Citations

10

An opinion on Wastewater-Based Epidemiological Monitoring (WBEM) with Clinical Diagnostic Test (CDT) for detecting high-prevalence areas of community COVID-19 infections DOI Creative Commons
Md. Aminul Islam,

Foysal Hossen,

Arifur Rahman

et al.

Current Opinion in Environmental Science & Health, Journal Year: 2022, Volume and Issue: 31, P. 100396 - 100396

Published: Oct. 6, 2022

Wastewater-Based Epidemiological Monitoring (WBEM) is an efficient surveillance tool during the COVID-19 pandemic as it meets all requirements of a complete monitoring system including early warning, tracking current trend, prevalence disease, detection genetic diversity well asthe up-surging SARS-CoV-2 new variants with mutations from wastewater samples. Subsequently, Clinical Diagnostic Test widely acknowledged global gold standard method for disease monitoring, despite several drawbacks such high diagnosis cost, reporting bias, and difficulty asymptomatic patients (silent spreaders infection who manifest nosymptoms disease). In this reviewand opinion-based study, we first propose combined approach) detecting in communities using clinical sample testing, which may be feasible effective emerging public health long-term nationwide system. The viral concentrations samples can used indicatorsto monitor ongoing trends, predict carriers, detect hotspot areas, while sampleshelp mostlysymptomaticindividuals isolating positive cases validate WBEM protocol mass vaccination booster doses COVID-19.

Language: Английский

Citations

36

A rapid, high-throughput, and sensitive PEG-precipitation method for SARS-CoV-2 wastewater surveillance DOI

Xiawan Zheng,

Mengying Wang, Yu Deng

et al.

Water Research, Journal Year: 2022, Volume and Issue: 230, P. 119560 - 119560

Published: Dec. 31, 2022

Language: Английский

Citations

32

Quantification of SARS-CoV-2 RNA in wastewater treatment plants mirrors the pandemic trend in Hong Kong DOI Open Access

Xiawan Zheng,

Shuxian Li, Yu Deng

et al.

The Science of The Total Environment, Journal Year: 2022, Volume and Issue: 844, P. 157121 - 157121

Published: July 2, 2022

Language: Английский

Citations

31