Eucommia ulmoides adapts to drought stress by recruiting rhizosphere microbes to upregulate specific functions DOI
Chunbo Dong,

Yongqiang Liu,

Anfeng Hu

et al.

Biology and Fertility of Soils, Journal Year: 2024, Volume and Issue: unknown

Published: Dec. 21, 2024

Language: Английский

Comparison of diversities, network patterns and potential functions of microbial communities in different soil type oolong tea growing areas DOI Creative Commons

Weihong Huang,

Yan Zhou, Zhisheng Zheng

et al.

Environmental Technology & Innovation, Journal Year: 2025, Volume and Issue: unknown, P. 104039 - 104039

Published: Jan. 1, 2025

Language: Английский

Citations

1

Impacts of forest expansion on microbial diversity and community assembly in fragmented mountain ecosystems DOI

Wen-Hui Lian,

Wensheng Zhao,

Jia-Rui Han

et al.

Environmental Research, Journal Year: 2025, Volume and Issue: unknown, P. 120956 - 120956

Published: Jan. 1, 2025

Language: Английский

Citations

1

Metagenomic monitoring of bacterial communities and functional genes in bulk soil surrounding a rare, endangered and protected tree: Acacia pachyceras DOI Creative Commons
Nazima Habibi,

Fadila Al-Salameen,

Saif Uddin

et al.

Discover Soil., Journal Year: 2025, Volume and Issue: 2(1)

Published: Feb. 11, 2025

Language: Английский

Citations

1

Mechanisms of benzene and benzo[a]pyrene biodegradation in the individually and mixed contaminated soils DOI
Mukhtiar Ali, Qing Wang,

Zhuanxia Zhang

et al.

Environmental Pollution, Journal Year: 2024, Volume and Issue: 347, P. 123710 - 123710

Published: March 6, 2024

Language: Английский

Citations

8

Mining microbial and metabolic dark matter in extreme environments: a roadmap for harnessing the power of multi-omics data DOI Creative Commons

Jia-Rui Han,

Shuai Li, Wen‐Jun Li

et al.

Advanced Biotechnology, Journal Year: 2024, Volume and Issue: 2(3)

Published: Aug. 5, 2024

Extreme environments such as hyperarid, hypersaline, hyperthermal environments, and the deep sea harbor diverse microbial communities, which are specially adapted to extreme conditions known extremophiles. These extremophilic organisms have developed unique survival strategies, making them ideal models for studying diversity, evolution, adaptation adversity. They also play critical roles in biogeochemical cycles. Additionally, extremophiles often produce novel bioactive compounds response corresponding challenging environments. Recent advances technologies, including genomic sequencing untargeted metabolomic analysis, significantly enhanced our understanding of ecology, genetic physiological characteristics The integration advanced multi-omics technologies into culture-dependent research has notably improved efficiency, providing valuable insights functions biosynthetic capacities vast untapped resources present substantial opportunities discovering natural products advancing knowledge ecology evolution. This review highlights current status on microbiomes, focusing ecological roles, isolation cultivation exploration their potential. Moreover, we emphasize importance potential more strain metabolites, would be boosted greatly by harnessing power data.

Language: Английский

Citations

7

Relationships among protozoa, bacteria and fungi in polycyclic aromatic hydrocarbon-contaminated soils DOI Creative Commons

Jingqi Du,

Tong Jia,

Jinxian Liu

et al.

Ecotoxicology and Environmental Safety, Journal Year: 2024, Volume and Issue: 270, P. 115904 - 115904

Published: Jan. 1, 2024

Soil bacterial and fungal communities play key roles in the degradation of organic contaminants, their structure function are regulated by bottom-up top-down factors. Microbial ecological effects polycyclic aromatic hydrocarbons (PAHs) trophic interactions among protozoa bacteria/fungi PAH-polluted soils have yet to be determined. We investigated microbiome PAH-contaminated wasteland farmland soils. The results indicated that total concentration 16 PAHs (∑PAHs) was significantly correlated with Shannon index, NMDS1 relative abundances bacteria, fungi (e.g., Pseudofungi) microbiome. Structural equation modelling linear fitting demonstrated cascading relationships PAHs, protozoan bacterial/fungal terms abundance diversity. Notably, individual were microbe-grazing at genus level, these organisms those PAH-degrading bacteria fungi. Bipartite networks indirectly modulate PAH regulating communities. Therefore, might involved microbial predation contaminated soil.

Language: Английский

Citations

6

Agricultural management reshaped the diversity patterns and community assembly of rhizosphere bacterial communities in a desert farming system DOI

Wen-Hui Lian,

Mei-Xiang Li,

Ling-Xiang Yue

et al.

Applied Soil Ecology, Journal Year: 2024, Volume and Issue: 203, P. 105656 - 105656

Published: Sept. 26, 2024

Language: Английский

Citations

5

Diversity and Functional Insights into Endophytic Fungi in Halophytes from West Ordos Desert Ecosystems DOI Creative Commons

Xingzhe Wang,

Yan Zhang, Jingpeng Li

et al.

Journal of Fungi, Journal Year: 2025, Volume and Issue: 11(1), P. 30 - 30

Published: Jan. 4, 2025

Arid desert regions are among the harshest ecological environments on Earth. Halophytes, with their unique physiological characteristics and adaptability, have become dominant vegetation in these areas. Currently, research halophytes this region is relatively limited, particularly concerning studies related to root endophytic fungi, which been rarely reported on. Therefore, investigating diversity composition of fungi crucial for maintaining balance such an arid environment. This study focuses eight representative angiosperm from West Ordos Desert China (including Nitraria tangutorum, Salsola passerina, Suaeda glauca, Reaumuria trigyna, kaschgarica, Limonium aureum, Apocynum venetum, Tripolium vulgare), utilizing Illumina MiSeq high-throughput sequencing technology combined soil physicochemical factor data analyze diversity, composition, functions root-associated fungal communities. Ascomycota dominated most halophytes, recretohalophytes, where it accounted average 88.45%, while Basidiomycota was predominant glauca. A Circos analysis top 10 abundant genera revealed Fusarium, Dipodascus, Curvularia, Penicillium, other genera. Co-occurrence network showed significant differences networks across halophyte types, complex observed excreting characterized by highest number nodes connections, indicating tighter symbiotic relationships. In contrast, pseudohalophytes were simple, reflecting lower community cohesiveness. Redundancy (RDA) Mantel tests demonstrated that factors as organic matter, available sulfur, urease significantly influenced richness, evenness, suggesting properties play a critical role regulating fungal-plant symbiosis. Functional predictions indicated important roles metabolic pathways nucleotide biosynthesis, carbohydrate degradation, lipid metabolism, may enhance plant survival saline-alkaline environments. Furthermore, high abundance pathogens saprotrophs some communities suggests potential defense matter decomposition. The results provide reference advancing development utilization resources, applications ecosystem restoration cultivation.

Language: Английский

Citations

0

Effects of Nitrogen Addition and Drought on Soil Microbial Diversity and Community Composition in a Young Tree Community DOI Open Access

Yanyan Bian,

Xingli Wu, Yulin Zhu

et al.

Forests, Journal Year: 2025, Volume and Issue: 16(2), P. 276 - 276

Published: Feb. 6, 2025

Soil microorganisms are well known to play a crucial role in carbon and nutrient cycling within terrestrial ecosystems. Numerous research efforts have demonstrated that nitrogen deposition can change forest soil microbial diversity community composition; however, it is still unclear how will affect the composition subtropical forests under background of increasing drought. Consequently, over period 2.5 years, we carried out an experiment using two N addition regimes three water treatment levels reveal effects nitrogen, drought, influence their interaction on microorganisms. Overall, found both drought decreased bacterial Shannon Simpson indices yet had no significant effect fungal diversity. In well-watered treatments, did not significantly reduce diversity, while moderate severe reducing by 27.05% 0.13%, respectively, treatment. Drought altered bacteria regardless addition. changed less composition. The content, fine root biomass, pH were correlated with composition, which explained 53.3%, 11.1%, 8.7% changes respectively. These results suggest may intensify inhibitory magnitude direction impact community.

Language: Английский

Citations

0

Response of Soil Microbial Communities in Extreme Arid Deserts to Different Long-Term Management Methods DOI Open Access
Yulin Zhang, Yi Du, Zhaobin Mu

et al.

Forests, Journal Year: 2025, Volume and Issue: 16(2), P. 306 - 306

Published: Feb. 10, 2025

(1) Background: As population growth accelerates, unsustainable practices such as excessive cutting and burning of desert plants in the transition zones between deserts oases have led to widespread vegetation loss. (2) Methods: The experiment was conducted oasis zone on southern edge Taklamakan Desert from 2010 2023 year. Among treatments included a control group (CK), spring (CS), fall (CF), (BS), flood water irrigation (FI). We used high-throughput sequencing determine soil microbial composition diversity routine laboratory methods physical chemical properties enzyme activities. (3) Results: No significant differences bacterial alpha (Chao1, Dominance, Observed_features, Pielou_e, Shannon, Simpson) across different long-term disturbance patterns. In fungi, CK treatment showed significantly higher Chao1, Observed_features indices compared BS FI. Principal component analysis revealed substantial reduction community FI, while fungal communities were lower CS BS, CF, FI; (4) Conclusions: Soil moisture content, electrical conductivity, organic carbon, activity cellobiohydrolase key factors shaping community. For carbon β-1,4-glucosidase main drivers.

Language: Английский

Citations

0