Genome-wide identification of the OVATE gene family and revelation of its expression profile and functional role in eight tissues of Rosa roxburghii Tratt DOI Creative Commons
Yanlin An, Xueqi Li, Yani Chen

et al.

BMC Plant Biology, Journal Year: 2024, Volume and Issue: 24(1)

Published: Nov. 13, 2024

The OVATE gene family is a new class of transcriptional repressors, which play an important regulatory role in plant growth and development. Many studies have proved that the can regulate development tissues organs resist stress, but its quantity functional Rosa roxburghii remain unknown. In this study, 14 members were identified by re-annotating genome roxburghii, these unevenly distributed on 6 chromosomes. Evolutionary analysis indicated classified into three groups. their promoter regions, many hormone-related cis-acting elements such as ABA, GA, MeJA identified. Segmental duplication driving force for expansion roxburghii. Transcriptome sequencing RT-qPCR showed had specific tissue expression pattern For instance, level Rr602241 leaves was more than 4 times other tissues. Rr101515 highly expressed FR1 FR4 stages fruit tree development, homologous to regulating shape tomatoes. These results suggest may diverse functions different Furthermore, based transcriptome data eight tissues, co-expression network transcription factors genes constructed. conclusion, our study provides profiles reveals potential roles Tratt.

Language: Английский

Transcriptomic analysis reveals the crucial role of YABBY genes family in hormonal induced parthenocarpy in Cucumis sativus L. DOI Creative Commons
Tingting Liu,

Rahat Sharif,

Zhensheng Shi

et al.

BMC Plant Biology, Journal Year: 2025, Volume and Issue: 25(1)

Published: Jan. 11, 2025

The plant-specific YABBY transcription factor family plays several activities, including responding to abiotic stress, establishing dorsoventral polarity, and developing lateral organs. Cucumis sativus L. commonly referred as cucumber one of the first vegetable crops with a fully sequenced genome. In this work, we examined application NAA, CPPU, GA4 + 7 inflict parthenocarpy in ZK line. expression pattern genes throughout fruit development performed genomic census (Cucumis L.). Based on peptide classification, discovered eight CsYABBY divided them into five subfamilies. Similarities motif composition exon-intron structure were also observed. cis-elements gene ontology (GO) analysis revealed involvement vegetative growth transition reproductive phase. differential response 7. particular, CsYABBY1 was induced sharply by NAA CPPU but not transient CsCRC disclosed that it is localized nucleus. These findings point possibility may positively affect could be utilized generate parthenocarpic fruits.

Language: Английский

Citations

1
microRNA regulates cytokinin induced parthenocarpy in cucumber (Cucumis sativus L.) DOI

Rahat Sharif,

Yamei Zhu,

Yaoyue Huang

et al.

Plant Physiology and Biochemistry, Journal Year: 2024, Volume and Issue: 212, P. 108681 - 108681

Published: May 13, 2024

Language: Английский

Citations

5
Omics-assisted crop improvement under abiotic stress conditions DOI Creative Commons
Ali Raza, Sunil S. Gangurde, Karansher Singh Sandhu

et al.

Plant Stress, Journal Year: 2024, Volume and Issue: unknown, P. 100626 - 100626

Published: Oct. 1, 2024

Language: Английский

Citations

5
Genome-wide identification of the sorghum OVATE gene family and revelation of its expression characteristics in sorghum seeds and leaves DOI Creative Commons
Yanlin An, Xiaobo Xia, Xiaoqin Zhang

et al.

Scientific Reports, Journal Year: 2024, Volume and Issue: 14(1)

Published: July 2, 2024

Abstract The OVATE gene family plays an important role in regulating the development of plant organs and resisting stress, but its expression characteristics functions sorghum have not been revealed. In this study, we identified 26 genes BTx623 genome, which were divided into four groups distributed unevenly across 9 chromosomes. Evolutionary analysis showed that after differentiation between Arabidopsis , may experienced unique expansion events, all members negatively selected. Transcriptome sequencing RT-qPCR results diverse characteristics, such as SORBl_3001G468900 SORBl_3009G173400 significantly expressed seeds, while SORBI_3005G042700 SORBI_3002G417700 only highly L1. Meantime, promoter region, a large number hormone-associated cis-acting elements identified, these suggest be involved specific leaves seeds. This study improves understanding provides clues for further exploration function .

Language: Английский

Citations

2
Genome-wide identification of the sorghum OVATE gene family and revelation of its expression characteristics in sorghum seeds and leaves DOI Creative Commons
Yanlin An, Xiaobo Xia, Xiaoqin Zhang

et al.

Research Square (Research Square), Journal Year: 2024, Volume and Issue: unknown

Published: Jan. 12, 2024

Abstract The OVATE gene family plays an important role in regulating the development of plant organs and resisting stress, but its expression characteristics functions sorghum have not been revealed. In this study, we identified 26 genes BTx623 genome, which were divided into four groups distributed unevenly across 9 chromosomes. Evolutionary analysis showed that after differentiation between Arabidopsis , may experienced unique expansion events, all members negatively selected. Transcriptome sequencing RT-qPCR results diverse characteristics, such as SORBl_3001G468900 SORBl_3009G173400 significantly expressed seeds, while SORBI_3005G042700 SORBI_3002G417700 only highly L1. Meantime, promoter region, a large number hormone-associated cis-acting elements identified, these suggest be involved specific leaves seeds. This study improves understanding provides clues for further exploration function family.

Language: Английский

Citations

1
Genome-wide identification of the OVATE gene family and revelation of its expression profile and functional role in eight tissues of Rosa roxburghii Tratt DOI Creative Commons
Yanlin An, Xueqi Li, Yani Chen

et al.

BMC Plant Biology, Journal Year: 2024, Volume and Issue: 24(1)

Published: Nov. 13, 2024

The OVATE gene family is a new class of transcriptional repressors, which play an important regulatory role in plant growth and development. Many studies have proved that the can regulate development tissues organs resist stress, but its quantity functional Rosa roxburghii remain unknown. In this study, 14 members were identified by re-annotating genome roxburghii, these unevenly distributed on 6 chromosomes. Evolutionary analysis indicated classified into three groups. their promoter regions, many hormone-related cis-acting elements such as ABA, GA, MeJA identified. Segmental duplication driving force for expansion roxburghii. Transcriptome sequencing RT-qPCR showed had specific tissue expression pattern For instance, level Rr602241 leaves was more than 4 times other tissues. Rr101515 highly expressed FR1 FR4 stages fruit tree development, homologous to regulating shape tomatoes. These results suggest may diverse functions different Furthermore, based transcriptome data eight tissues, co-expression network transcription factors genes constructed. conclusion, our study provides profiles reveals potential roles Tratt.

Language: Английский

Citations

0