Slower antibiotics degradation and higher resistance genes enrichment in plastisphere
Jiao Wang,
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Chu Peng,
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Yexin Dai
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et al.
Water Research,
Journal Year:
2022,
Volume and Issue:
222, P. 118920 - 118920
Published: Aug. 1, 2022
Language: Английский
Indoor microplastics and bacteria in the atmospheric fallout in urban homes
The Science of The Total Environment,
Journal Year:
2022,
Volume and Issue:
852, P. 158233 - 158233
Published: Aug. 22, 2022
Language: Английский
Responses of bacterial communities to microplastics: More sensitive in less fertile soils
Peiyan Qin,
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Tao Li,
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Zhaowen Cui
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et al.
The Science of The Total Environment,
Journal Year:
2022,
Volume and Issue:
857, P. 159440 - 159440
Published: Oct. 13, 2022
Language: Английский
Evaluating the adsorption and desorption performance of poly(butylene adipate-co-terephthalate) (PBAT) microplastics towards Cu(II): The roles of biofilms and biodegradation
Chemical Engineering Journal,
Journal Year:
2023,
Volume and Issue:
464, P. 142714 - 142714
Published: April 1, 2023
Language: Английский
Plastisphere microbiome: Methodology, diversity, and functionality
Yuanze Sun,
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Mochen Wu,
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Jingxi Zang
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et al.
iMeta,
Journal Year:
2023,
Volume and Issue:
2(2)
Published: March 31, 2023
Broad
topics
of
the
plastisphere
in
various
environments
are
reviewed,
including
its
methodologies,
diversity,
functionality,
and
outlook.
Due
to
their
durability,
malleability,
low
cost,
plastics
have
become
an
integral
material
industrial
consumer
products
[1].
Global
plastic
production
has
enormously
grown
from
1.5
million
metric
tonnes
1950
367
2020
[2].
Despite
remarkable
benefits
convenience
human
lives,
awareness
about
negative
environmental
impacts
increased
because
vast
amount
waste.
It
is
estimated
that
approximately
12,000
waste
will
be
accumulated
globally
by
2050
[3].
Under
action
external
forces,
for
example,
solar
radiation,
physical
abrasion,
biological
degradation,
large
pieces
can
break
down
into
smaller
particles,
generating
microplastics
(diameter
<
5
mm)
[4-6].
Accumulating
studies
show
ubiquitous
throughout
environments,
marine,
freshwater,
atmospheric,
soil
ecosystems,
even
remotest
areas
planet
[7-11].
Their
presence
persistence
raised
significant
concerns
as
ingested
subsequently
transmitted
higher
trophic-level
organisms
through
food
chain,
thus
harm
biodiversity
ecosystems
[12-14].
As
exogenous
hydrophobic
substrate,
microplastic
surfaces
provide
a
unique
niche
growth
proliferation
diversity
microorganisms,
constituting
distinct
ecological
habitat
called
"plastisphere"
[15-17].
Following
development
modern
molecular
methods
emerging
bioinformatics
tools,
application
high-throughput
DNA
sequencing
increasing
our
understanding
diverse
microorganisms
inhabit
[18,
19].
However,
consensus
lacking
scientific
community
on
characteristics
plastisphere.
For
instance,
previous
dominantly
reported
microbial
communities
showed
different
compositional
structures
compared
with
living
surrounding
whereas
several
observed
similar
[20,
21].
The
could
or
lower
than
[22,
23].
Additionally,
functions
may
within
[24,
25].
Plastisphere
focused
initially
marine
environment
gradually
extended
freshwater
indoor
house
[26-30].
matrices
also
limited
definitive
answers
Several
critical
questions
concerning
remain
unclear.
Currently,
whether
really
recruit
specific
unknown,
few
clearly
illustrated
processes
shaping
assembly
microplastics.
How
stochastic
deterministic
influence
unclear,
knowledge
gaps
exist
adverse
effects
pose
ecosystem.
Therefore,
this
review,
peer-reviewed
journal
articles
investigated
were
searched
using
Web
Science
(http://apps.webofknowledge.com/)
keywords
"microplastic(s)"
(Figure
S1),
study
designs
characterization
exploring
consequently
discussed.
composition,
underlying
mechanisms
estimated.
We
end
considering
important
unanswered
field
future
research
priorities.
This
review
provides
comprehensive
interpretation
communities.
Dr.
Erik
Zettler
colleagues
first
established
concept
2013
S1).
High-throughput
method
was
used
characterize
heterotrophs,
autotrophs,
predators,
symbionts
debris
collected
North
Atlantic
[16].
study,
extensively
[19].
Studies
ecosystem
started
2014
researchers
recognized
originated
systems.
In
year,
Hoellein
published
two
papers
[17,
31].
One
describe
bacterial
assemblages
colonizing
sampled
urbanized
river
Chicago,
Illinois,
USA.
other
incubated
plastispheres
three
(river,
pond,
artificial
stream,
respectively).
Community
compositions
significantly
differ
respective
planktonic
comparison
systems,
more
complex,
containing
variable
proportions
mineral
organic
matter.
Tracing
solid
analyte
sample
composed
solids
difficult,
delayed
analysis
later
period.
2019,
Huang
applied
farmland
sampling
laboratory
incubation,
respectively,
estimate
[32,
33].
same
Puglisi
et
al.
plastic-associated
biofilm
constructed
disposal
systems
(landfill
sites)
[34].
These
found
diversities,
compositions,
co-occurrence
interactions
those
atmosphere
most
recent
years.
2022,
Wang
via
incubation
[35].
summary,
followed
detection
which
originates
extends
finally,
terrestrial
habitats
environments.
methodology
manifold.
general,
samples
routes:
sampling,
situ
culture,
laboratory-simulated
experimentation
(Tables
S1–S3,
Figure
1).
studying
aquatic
same,
experiments
dominate
studies.
studies,
collect
pick
up
microplastics,
analyze
sorting
liquid
details.
both
fresh
seawater
samples.
Manta
plankton
nets
commonly
used,
particles
identified
selected
spot
36,
37].
sediment
soil,
grab
samplers
often
used;
bulk
sieved,
putative
extracted
[38-40].
transferred
laboratories
dry
ice,
stored
at
−80°C
before
analysis.
certain
polymer
types
shapes
then
under
natural
conditions.
After
duration,
collected,
surface
analyzed
[41-43].
simulated
experiments,
controlled
conditions
(e.g.,
pH,
nutrients,
temperature)
[27,
44,
45].
simulating
system
coupled
continuous
flow
device
[46].
microcosm
usually
sterilized
glass
containers
[28,
47].
advantages
disadvantages.
reveal
realistic
selection
needs
performed
immediately
after
case
biofilms
change.
Direct
visual
examination
naked
eyes
dissecting
microscopes
employed,
would
inevitably
introduce
non-polymer
oil
residues,
chitin-like
materials)
further
analyses
[48].
all
particles;
thus,
it
difficult
identify
differences
between
types.
Li
[29]
water
functions,
processes,
interaction
networks
but
did
not
Similarly,
Luo
[24]
film
residues
55
plastic-mulching
croplands
subtropical
China
report
these
residues.
compare
results
free-living
materials
sites,
helpful
species
features
selected.
polymers,
shapes,
colors
frequently
performed.
Pinnell
Turner
[49]
evaluated
conventional
(polyethylene
terephthalate
[PET])
biodegradable
(polyhydroxyalkanoate
[PHA])
substrates
Laguna
Madre
lagoon
northern
Gulf
Mexico
28
days.
They
intended
observe
structure
plastispheres.
Wen
[50]
studied
functional
incubating
pond
Yangtze
Estuary,
China.
color-dependent.
substrates.
Oberbeckmann
set
experiment
polyethylene
(PE)
polystyrene
(PS)
pellets
wooden
beads
along
coastal-to-estuarine
gradient
Baltic
Sea,
Germany
[51].
requires
sufficient
time
growth,
possible
maintain
constant
during
growing
Thus,
faces
difficulties
quantifying
influences
characteristics.
ensure
recovery
cultured
mesh
bags
Recently,
employed
52-55].
Zhu
[28]
nylon
(mesh
size:
50
μm)
buried
them
investigate
operation
heterogeneity
contact
distances
differ.
Even
though
limitations,
incorporation
insights
variables
method,
simulation
single
multiple
Yang
[56]
reactor
incubate
evaluate
structure.
[44]
rather
heavy
metals,
stronger
limitations.
major
concern
concentration
test.
principle,
should
maximumly
simulate
concentrations
concentrations.
declared
based
detected
concentrations,
values
generally
[57].
Moreover,
unrealistic
perform
scales
close
experienced
real
environment.
landfill
sites
aged
years
[58].
nearly
impossible
duplicate
setting,
e.g.,
temperature,
redox,
light
intensity,
indigenous
microorganisms.
Laboratory
simulations
take
advantage
conditions,
contribute
community.
opinion,
combination
above
optimal
formation
contributing
factors.
Imaging
technologies,
such
scanning
electron
microscopy
(SEM)
combinatorial
labeling
spectral
imaging-fluorescence
hybridization
(CLASI-FISH),
demonstrated
crowded,
surface-based
micro-ecosystem
includes
range
[59-61].
Over
years,
next-generation
(NGS)
technologies
gained
enormous
popularity
Most
microbiome
surveys
amplicon
metagenomic
sequencing.
Polymerase
chain
reaction
(PCR)
taxonomic
marker
gene
uncover
profiles
marking
omnipresent
2).
16S
rRNA
common
identifying
urban
rivers
[62].
Ogonowski
explored
bacterioplankton
Illumina
libraries
substrate-driven
[63].
comparison,
only
handful
eukaryotes
[64-66].
By
implementing
internal
transcribed
spacer2
metabarcoding
debris,
De
Tender
fungal
genera
[67].
Although
second-generation
technology
yielded
substantial
data
still
resolution
coverage.
produces
short
reads,
forcing
choose
barcoding
regions
[68].
Hence,
long-read
technology,
third-generation
Pacific
Biosystems
SMRT
Oxford
Nanopore
sequencing,
been
composition
improved
classification
taxa
[69,
70].
Davidov
61
level
Mediterranean
Sea
MinION
[69].
shotgun
whole
genomic
[49,
71,
72],
simultaneously
capture
genetic
present
one
information
across
kingdoms
predict
functions.
Jessica
Bryant
2016
[73].
technical
analytical
breakthroughs,
multiomics,
metatranscriptomic,
proteogenomic,
metabolomic
approaches,
enable
active
members
acting
approaches
metabolic
pathways
confirm
predictions.
huge
potential
analyzing
plastispheres,
microbes
enzymes
degrading
plastics.
Wright
combined
proteogenomic
approach
biodegradation
succession
(PET)
[72].
Wu
integrated
metatranscriptomic
antibiotic
resistomes
laboratory-incubated
plastisphere,
demonstrating
actively
expressed.
Future
multiomic
considerably
deciphering
roles
microbial-mediated
biochemical
transformations.
recently
topic.
bacteria,
archaea,
fungi,
eukaryotes,
colonize
almost
current
work
varies
3).
Alpha-,
Beta-,
Gamma-Proteobacteria
typical
enriched
[66,
75-77].
mainly
comprises
bacteria
belonging
phylum
Proteobacteria
(Alpha-
Gamma-)
Bacteroidetes
[42,
78-80].
majority
belongs
phyla
(Alpha-)
Actinobacteria
47,
81-83].
groups,
i.e.,
Alpha-Proteobacteria
Rhodospirillaceae),
consistently
[62,
81,
84-86].
numbers
likely
surfaces.
exhibits
yet
conclusively
demonstrated.
well
populate
column
Synechococcus
Prochlorococcus
species)
strongly
diverge
able
associate
form
[87-89].
unsurprisingly,
exhibit
fact,
any
surfaces,
bottles
[74],
ship
hulls
[90],
platforms
[91],
man-made
items,
animals,
plants,
zooplankton,
micro/macro-aggregates,
transparent
exopolymer
rocks
[92].
Comparing
core
But
until
now,
include
comparable
control
materials.
glass,
ceramic,
shells,
wood
formed
45,
63,
93].
No
occur
plastics,
relative
abundance
groups
(i.e.,
ceramics)
substantially
demonstrate
predominant
mode
life,
whereby
interfaces,
[94],
pore
spaces
[95],
plant
roots
[96].
Microplastics
analogous
sessile
lifestyles
reason
abundant
soil.
strongest
early
stage
colonization
[63]
PE,
PP,
PS
distinctly
nonplastic
(cellulose
beads)
2
weeks
Alpha-
(such
Rhodobacteraceae)
Gamma-proteobacteria,
Flavobacteria
among
initial
colonizers
fast-growing
opportunistic
quickly
respond
changes
[97].
properties
hydrophilicity,
roughness,
electric
charge,
affect
attachment
colonizers.
Previous
suggest
preferentially
hydrophilic
possibly
due
wettability
energies
[61].
why
intense
[43].
high
roughness
supply
points
microbes,
impact
[98].
importance
declines.
variables,
salinity,
nutrient
content,
dynamic
patterns
stages
maturation.
15°C
25°C,
Sun
[27]
type,
induced
PE
PLA
[99]
global
meta-analysis
largest
composition.
there
remains
no
clear
conclusion
how
prioritized
factors
unknown.
Leached
compounds
is,
additives
oligomers,
partly
[43,
61].
Significantly
[82,
83,
100,
101].
A
nutrient-rich
recruiting
copiotrophic
microbes.
Plastic
chemicals
promote
inhibit
growth.
Overall,
we
conclude
colonization,
inner
play
role
Interesting
drive
maturation
theories
build
when
life.
Furthermore,
assemble
over
essential
understand
species,
trait
abundance,
members,
ultimately,
genes
Theoretically,
ecologists
proposed
four
evolutionary
namely
selection,
dispersal,
drift,
diversification,
principles
ecology
[102].
Two
theoretical
lines
debated
examine
interpret
assembly:
niche-based
theory
neutral
theory,
[103,
104].
obtain
quantitative
assembly,
entire-community
null
model
(QPEN)
[105]
infer
phylogenetic-bin-based
[106]
normalized
stochasticity
ratio
(NST)
[107]
Sloan
[108].
suggested
26].
[20]
model,
NST,
field-sampled
process
drift
dispersal
limitation
primarily
contributed
assembly.
indicated
dominant
neutral-based
27,
109].
(deterministic)
dominated
they
goodness-of-fit
observations
ascribed
Many
communities,
[100].
decrease,
increase
Parallelly,
leach
owing
chemotaxis,
processes.
scenario
spatial
areas,
location-specific
relationships
obtained,
probably,
selection.
Simultaneously,
particle
relocation
occurs
transportation
local
scales.
Such
phenomenon
uncertainty
estimating
More
needed
quantitatively
determine
Whether
weight
loss
ongoing
question.
screened
polymer-degrading
[110,
111].
Delacuvellerie
[110]
floating
sediment-associated
sediments
hydrocarbon-degrading
Alcanivorax,
Marinobacter
Arenibacter
implying
potentially
involved
degradation.
Multiomics
evaluating
degradation
xenobiotic
particles.
allow
speculation
residing
actually
Bhagwat
[112]
upregulation
PET
hydrolysis-related
enzyme
metagenomics,
suggesting
Through
approach,
characterized
PET-degrading
degradable
ability
6
depends
recalcitrance
substrate
crystallinity)
accessibility
demonstrates
existing
highly
recalcitrant
PS)
seldom
reported.
metagenomics
metaproteomics
polymer-unspecific
appear
undergoing
[50].
[113]
PP
metaproteomic
metagenomes,
metabolism
protein
level.
degrade
seems
closely
related
contain
very
stable
backbones
degrade,
PET,
polyurethane,
polycarbonate
susceptible
hydrolysis
catalyze
Further
in-depth
exploration
genomics
warranted
elemental
geochemical
cycles.
enrichment
adenylyl
sulfate
reductase
dissimilatory
sulfite
sediment-interface
coastal
lagoon,
stimulation
reduction
[73]
plastic-attached
bacteria;
genes,
nifH,
nitrogen
fixation
provided
substantive
evidence
cycling
[114-116].
Su
[116]
denitrifying
activity
N2O
water,
overlooked
source.
denitrifiers
hypoxic
utilize
nitrate/nitrite
acceptors
sustain
[116].
Rahman
[117]
gene-array
carbon
fixation,
denitrification,
sulfur
abundant.
precisely
plastisphere-induced
flux,
indicate
change
stability
function
Considering
biomass,
scale
needed.
pathogens
around
worldwide.
Vibrio
temperate
tropical
[68,
118,
119],
Pseudomonas
monteilii,
P.
mendocina,
angilliseptica,
syringae)
[101,
120,
121].
ratios
pathogens/bacteria
[28].
resistance
(ARGs)
[26,
35,
37,
56,
122].
[122]
ARGs
microbiota
greater
Gyre,
Since
reservoirs
refuges
concern.
possess
complexity,
hotspot
horizontal
transfer.
findings
frequency
plasmid
transfer
bacteria.
facilitate
ARG
propagation
addition,
embedded
protected
extracellular
polymeric
substances
tolerant
stresses
discrete
cells.
acquisition
tolerance
easier
presenting
challenges
health.
reporting
vectors
taken
caution.
Biofilms
considered
pathogens.
buoyancy,
transportability
co-occurring
highlighted.
induce
risk
prolonged
exposure
distances.
To
date,
cannot
answer
question
specifically
ARGs.
vital
questions,
frequent
must
addressed
Compared
unexplored.
Current
predictions
revealed
participate
number
ecosystems.
Multiple
importantly,
shown
predicted
Multi-omic
verification
contamination
threat
Anthropocene
shows
sign
decreasing
near
future.
Understanding
associated
managing
predicting
risks
posed
pollution.
systematically
summarizes
experimental
explore
continued
assessment
elaborate
required
open
research.
Detailed
limited.
Biofilm
hours,
however,
ventured
dynamics
Traditional
suitable
tracking
Microfluidic
techniques
structural
fluid
behavior
microscopic
therefore
heterogenous
microenvironment
liquids.
microfluidic
devices
optical
coherence
tomography
valuable
qualitative
regarding
biofilms,
key
influencing
Diverse
factors,
hydrographic
textures,
availability,
characteristics,
types,
charges,
morphologies,
There
gap
Biological
predominately
micro-eukaryotic
poorly
understood.
All
create
complex
neighboring
cooperative
behaviors
enhance
stress
uptake.
parallel,
competition
always
pervasive
space
resource
limitations
present.
variation
manifold
dynamic,
function.
lack
interact
each
properties,
Comprehensive
methods,
genomics,
metatranscriptomics,
metabolomics,
help
holistic
view
What
notice
unavoidably
lead
errors.
errors
stem
bioinformatic
analysis,
causing
misalignment
reads
mistakes
genome
confirmatory
culture-dependent
pathogenicity.
Jie
Linna
Du
overall
conceptualization
design.
Yuanze
Sun,
Mochen
Wu,
Jingxi
Zang
writing
discussion
main
content
manuscript.
Muke
Cheng
Chen
figures
tables
authors
read
approved
final
project
supported
National
Natural
Foundation
(No.
41907341)
Beijing
Innovation
Consortium
Agriculture
Research
System
BAIC01-2023-27).
declare
conflict
interest.
manuscript
does
generate
code
data.
Supplementary
(figures,
tables,
scripts,
graphical
abstract,
slides,
videos,
Chinese
translated
version
update
online
DOI
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note:
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Language: Английский
Impact of persistent rain on microplastics distribution and plastisphere community: A field study in the Pearl River, China
Jiayan Wu,
No information about this author
Quanyun Ye,
No information about this author
Leiye Sun
No information about this author
et al.
The Science of The Total Environment,
Journal Year:
2023,
Volume and Issue:
879, P. 163066 - 163066
Published: March 31, 2023
Language: Английский
Research progress on the role of biofilm in heavy metals adsorption-desorption characteristics of microplastics: A review
Haixia Pan,
No information about this author
Xin Zhao,
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