In Silico Analysis and Development of the Secretory Expression of D-Psicose-3-Epimerase in Escherichia coli DOI Creative Commons
Nisit Watthanasakphuban, Boontiwa Ninchan, Phitsanu Pinmanee

et al.

Microorganisms, Journal Year: 2024, Volume and Issue: 12(8), P. 1574 - 1574

Published: Aug. 1, 2024

D-psicose-3-epimerase (DPEase), a key enzyme for D-psicose production, has been successfully expressed in

Language: Английский

A structural perspective on enzymes and their catalytic mechanisms DOI Creative Commons
Neera Borkakoti, António J. M. Ribeiro, Neera Borkakoti

et al.

Current Opinion in Structural Biology, Journal Year: 2025, Volume and Issue: 92, P. 103040 - 103040

Published: March 31, 2025

In this perspective, we analyse the progress made in our knowledge of enzyme sequences, structures and functions last 2 years. We review how much new data have been garnered annotated, derived from study proteins using structural computational approaches. Recent advances towards capturing 'Catalysis silico' are described, including predictions structures, their interactions mechanisms. highlight flood data, driven by metagenomic sequencing, improved resources, high coverage Protein Data Bank E.C. classes AI-driven structure prediction techniques that facilitate accurate protein structures. note focus on disordered regions context regulation specificity comment emerging bioinformatic approaches capture reaction mechanisms computationally for comparing predicting also consider drivers field next five

Language: Английский

Citations

0

Artificial intelligence-driven innovation in Ganoderma spp.: potentialities of their bioactive compounds as functional foods DOI Creative Commons
Sonali Khanal, Aman Sharma,

M. Radhakrishna Pillai

et al.

Sustainable Food Technology, Journal Year: 2025, Volume and Issue: unknown

Published: Jan. 1, 2025

AI significantly transforms the food business by optimizing production processes of therapeutic Ganoderma spp. and improving quality safety control based functional food.

Language: Английский

Citations

0

Prediction of genomic biomarkers for endometriosis using the transcriptomic dataset DOI

Zeynep Kucukakcali,

Sami Akbulut, Cemil Çolak

et al.

World Journal of Clinical Cases, Journal Year: 2025, Volume and Issue: 13(20)

Published: April 8, 2025

BACKGROUND Endometriosis is a clinical condition characterized by the presence of endometrial glands outside uterine cavity. While its incidence remains mostly uncertain, endometriosis impacts around 180 million women worldwide. Despite presentation several epidemiological and explanations, precise mechanism underlying disease ambiguous. In recent years, researchers have examined hereditary dimension disease. Genetic research has aimed to discover gene or genes responsible for through association linkage studies involving candidate DNA mapping techniques. AIM To identify genetic biomarkers linked application machine learning (ML) approaches. METHODS This case-control study accounted open-access transcriptomic data set control group. We included from 22 controls 16 patients this purpose. used AdaBoost, XGBoost, Stochasting Gradient Boosting, Bagged Classification Regression Trees (CART) classification using five-fold cross validation. evaluated performance models measures accuracy, balanced sensitivity, specificity, positive predictive value, negative value F1 score. RESULTS CART gave best metrics. The metrics obtained model are 85.7%, 100%, 75%, 100% 85.7% score, respectively. Based on variable importance modeling, we can use CUX2 , CLMP CEP131 EHD4 CDH24 ILRUN LINC01709 HOTAIR SLC30A2 NKG7 other transcripts with inaccessible names as potential endometriosis. CONCLUSION determined possible genomic with/without applied ML successfully classified created highly accurate diagnostic prediction model. Future could explain pathology endometriosis, non-invasive method replace invasive ones.

Language: Английский

Citations

0

Progressing microbial genomics: Artificial intelligence and deep learning driven advances in genome analysis and therapeutics DOI Creative Commons

R. Dhaarani,

M. Kiranmai Reddy

Intelligence-Based Medicine, Journal Year: 2025, Volume and Issue: unknown, P. 100251 - 100251

Published: April 1, 2025

Language: Английский

Citations

0

Data Lineage DOI

Rajesh Vayyala

IGI Global eBooks, Journal Year: 2025, Volume and Issue: unknown, P. 73 - 98

Published: March 14, 2025

Modern digital ecosystems may be open, compliant, and safe only by following data back to its source. This chapter covers the background, relevance, function of lineage in governance DevSecOps completely. Emphasizing requirement metadata management, policy-driven systems for maintaining integrity, automated tracking, Thanks growth cloud-native architectures artificial intelligence-driven analytics, companies realize more real-time tracking risk management regulatory compliance. Investigated alongside challenges like complexity, scalability problems, a lack interoperability are innovations, including blockchain-based AI-enhanced lineage. explains that good is benefit than need. Establishing trust crucial provides with tools negotiate complex today confidently.

Language: Английский

Citations

0

Multiplex CRISPR-Cas Genome Editing: Next-Generation Microbial Strain Engineering DOI
Se Ra Lim, Sang Jun Lee

Journal of Agricultural and Food Chemistry, Journal Year: 2024, Volume and Issue: 72(21), P. 11871 - 11884

Published: May 14, 2024

Genome editing is a crucial technology for obtaining desired phenotypes in variety of species, ranging from microbes to plants, animals, and humans. With the advent CRISPR-Cas technology, it has become possible edit intended sequence by modifying target recognition guide RNA (gRNA). By expressing multiple gRNAs simultaneously, targets at same time, allowing simultaneous introduction various functions into cell. This can significantly reduce time cost engineered microbial strains specific traits. In this review, we investigate resolution multiplex genome its application engineering microorganisms, including bacteria yeast. Furthermore, examine how recent advancements artificial intelligence could assist engineering. Based on these insights, present our perspectives future evolution potential impact technologies agriculture food industry.

Language: Английский

Citations

3

Recent advances in electrochemical biosensors for the detection of pathogens, diseases biomarkers, and heavy metal ions DOI
Manoj Kumar Goshisht, Goutam K. Patra,

Aabroo Mahal

et al.

Inorganica Chimica Acta, Journal Year: 2024, Volume and Issue: 574, P. 122403 - 122403

Published: Oct. 9, 2024

Language: Английский

Citations

3

Top 20 Influential AI-Based Technologies in Chemistry DOI Creative Commons
Valentine P. Ananikov

Published: April 12, 2024

The beginning and ripening of digital chemistry is analyzed focusing on the role artificial intelligence (AI) in an expected leap chemical sciences to bring this area next evolutionary level. analytic description selects highlights top 20 AI-based technologies 7 broader themes that are reshaping field. It underscores integration tools such as machine learning, big data, twins, Internet Things (IoT), robotic platforms, smart control processes, virtual reality blockchain, among many others, enhancing research methods, educational approaches, industrial practices chemistry. significance study lies its focused overview how these innovations foster a more efficient, sustainable, innovative future sciences. This article not only illustrates transformative impact but also draws new pathways chemistry, offering broad appeal researchers, educators, industry professionals embrace advancements for addressing contemporary challenges

Language: Английский

Citations

2

Prospects for synthetic biology in 21st Century agriculture DOI

Xingyan Ye,

Kezhen Qin, Alisdair R. Fernie

et al.

Journal of genetics and genomics/Journal of Genetics and Genomics, Journal Year: 2024, Volume and Issue: unknown

Published: Dec. 1, 2024

Language: Английский

Citations

2

Cell factories for biosynthesis of D-glucaric acid: a fusion of static and dynamic strategies DOI
Junping Zhou, Yinan Xue, Zheng Zhang

et al.

World Journal of Microbiology and Biotechnology, Journal Year: 2024, Volume and Issue: 40(10)

Published: Aug. 8, 2024

Language: Английский

Citations

1