Amino-Based Probe for Natural Products with Covalent Binding Ability to Lysine and Mechanism of Action of Medermycin DOI

Jiaxu Shang,

Shupeng Yin,

Jingjing Shen

et al.

Organic Letters, Journal Year: 2024, Volume and Issue: unknown

Published: Nov. 19, 2024

A chemoselective amino-based probe was designed for discovering natural products with covalent binding potential to lysine. Using this reactivity-based technique, a marine-derived Streptomyces strain identified, which could produce medermycin as the major metabolite. new compound, mederpyrrole A, derived from and anthranilic acid through nonenzymatic reaction isolated. Medermycin can react primary amines under mild conditions generate chimeric possessing naphthoquinone-pyrrole skeleton. It also covalently bind proteins.

Language: Английский

Harnessing the 14-3-3 protein–protein interaction network DOI Creative Commons
Paulo Pitasse-Santos,

Isaac Hewitt-Richards,

Malsha D. Abeywickrama Wijewardana Sooriyaarachchi

et al.

Current Opinion in Structural Biology, Journal Year: 2024, Volume and Issue: 86, P. 102822 - 102822

Published: April 28, 2024

Protein–protein interactions (PPIs) play a critical role in cellular signaling and represent interesting targets for therapeutic intervention. 14-3-3 proteins integrate many via PPIs are frequently implicated disease, making them intriguing drug targets. Here, we review the recent advances field. It will discuss roles within cell, elucidation of their expansive interactome, complex mechanisms that underpin function. In addition, significant development molecular glues target PPIs. particular, it focus on novel discovery methodologies have delivered selective, potent, drug-like molecules could open new avenues precision tools medicines.

Language: Английский

Citations

10

Targeted Covalent Modification Strategies for Drugging the Undruggable Targets DOI
Tomonori Tamura,

Masaharu Kawano,

Itaru Hamachi

et al.

Chemical Reviews, Journal Year: 2025, Volume and Issue: unknown

Published: Jan. 7, 2025

The term "undruggable" refers to proteins or other biological targets that have been historically challenging target with conventional drugs therapeutic strategies because of their structural, functional, dynamic properties. Drugging such undruggable is essential develop new therapies for diseases where current treatment options are limited nonexistent. Thus, investigating methods achieve drugging an important challenge in medicinal chemistry. Among the numerous methodologies drug discovery, covalent modification has emerged as a transformative strategy. attachment diverse functional molecules provides powerful platform creating highly potent and chemical tools well ability provide valuable information on structures dynamics targets. In this review, we summarize recent examples biomolecules development therapeutics overcome discovery challenges highlight how contribute toward particular, focus use chemistry drugs, identification, screening, artificial modulation post-translational modifications, cancer specific chemotherapies, nucleic acid-based therapeutics.

Language: Английский

Citations

0

Recent progress of chemical methods for lysine site-selective modification of peptides and proteins DOI
Jian Li, Jinjin Chen, Qi-Long Hu

et al.

Chinese Chemical Letters, Journal Year: 2024, Volume and Issue: unknown, P. 110126 - 110126

Published: June 1, 2024

Language: Английский

Citations

4

Proximity-Enhanced Cysteine-Histidine Crosslinking for Elucidating Intrinsically Disordered and Other Protein Complexes DOI Creative Commons
Qi Wu, Sebastian A. H. van den Wildenberg, Jeroen C. R. Brzoskowski

et al.

Chemical Science, Journal Year: 2025, Volume and Issue: unknown

Published: Jan. 1, 2025

A novel proximity-enhanced crosslinker using histidine–cysteine trapping uncovers a cryptic 14-3-3/hyperphosphorylated Tau interaction via Ser356, advancing the understanding of IDP interactions and prompting re-evaluation 14-3-3/Tau mechanisms.

Language: Английский

Citations

0

Tunable Stimuli-Responsive Module Based on α-Hydroxymethyl-α,β-Unsaturated Carbonyl Scaffold DOI

Rongfeng Shen,

Baoxin Zhang, Lanning Zhao

et al.

Journal of Materials Chemistry B, Journal Year: 2025, Volume and Issue: unknown

Published: Jan. 1, 2025

The α-hydroxymethyl-α,β-unsaturated carbonyl (HMUC) scaffold represents a valuable framework for constructing nucleophile-responsive materials.

Language: Английский

Citations

0

Covalent Targeting of Histidine Residues with Aryl Fluorosulfates: Application to Mcl-1 BH3 Mimetics DOI Creative Commons

Giulia Alboreggia,

Parima Udompholkul,

Emma L. Atienza

et al.

Journal of Medicinal Chemistry, Journal Year: 2024, Volume and Issue: 67(22), P. 20214 - 20223

Published: Nov. 12, 2024

Covalent drugs provide pharmacodynamic and pharmacokinetic advantages over reversible agents. However, covalent strategies have been developed mostly to target cysteine (Cys) residues, which are rarely found in binding sites. Among other nucleophilic residues that could be principle used for the design of drugs, histidine (His) has not given proper attention despite being an attractive residue pursue but underexplored. Aryl fluorosulfates, a mild electrophile is very stable biological media, recently identified as possible electrophiles react with side chains Lys; however, limited studies available on aryl fluorosulfates' ability His residues. We demonstrate incorporation fluorosulfate juxtaposing can afford rapid optimizations His-covalent As application, we report BH3 mimetics targeting His224 Mcl-1.

Language: Английский

Citations

3

Tying the knot with lysine DOI
Ana Koperniku, Nicholas A. Meanwell

Nature Reviews Chemistry, Journal Year: 2024, Volume and Issue: 8(4), P. 235 - 237

Published: March 18, 2024

Language: Английский

Citations

2

Genetically Encoded Epoxide Warhead for Precise and Versatile Covalent Targeting of Proteins DOI
Jinpeng Zhang, Xia Wang,

Qingjun Huang

et al.

Journal of the American Chemical Society, Journal Year: 2024, Volume and Issue: 146(23), P. 16173 - 16183

Published: May 31, 2024

Genetically encoding a proximal reactive warhead into the protein binder/drug has emerged as an efficient strategy for covalently binding to targets, enabling broad applications. To expand reactivity scope targeting diverse natural residues under physiological conditions, development of genetically encoded with excellent stability and is highly desired. Herein, we reported genetic epoxide-containing tyrosine (EPOY) developing covalent drugs. Our study demonstrates that EPOY, when incorporated nanobody (KN035), can cross-link different side chains (mutations) at same position PD-L1 protein. Significantly, single capable site-specific 10 nucleophilic was achieved first time. This would largely inspire warheads both small-molecule drugs Furthermore, incorporate EPOY designed ankyrin repeat (DarpinK13) create binders KRAS. KRAS binder holds potential achieve pan-covalent based on structural similarity among all oncogenic mutants while avoiding off-target NRAS/HRAS through interaction KRAS-specific (H95 E107). We envision H95 will be promising pan-KRAS inhibitors in future.

Language: Английский

Citations

2

Covalent Proximity Inducers DOI Creative Commons
Nir London

Chemical Reviews, Journal Year: 2024, Volume and Issue: unknown

Published: Dec. 18, 2024

Molecules that are able to induce proximity between two proteins finding ever increasing applications in chemical biology and drug discovery. The ability introduce an electrophile make such inducers covalent can offer improved properties as selectivity, potency, duration of action, reduced molecular size. This concept has been heavily explored the context targeted degradation particular for bivalent molecules, but recently, additional reported other contexts, well monovalent glues. is a comprehensive review inducers, aiming identify common trends current gaps their discovery application.

Language: Английский

Citations

2

Mass spectrometry-based methods for characterizing transient protein–protein interactions DOI
Clinton G. L. Veale, David J. Clarke

Trends in Chemistry, Journal Year: 2024, Volume and Issue: 6(7), P. 377 - 391

Published: June 13, 2024

Language: Английский

Citations

1