ATP11A Promotes Epithelial-mesenchymal Transition in Gastric Cancer Cells via the Hippo Pathway DOI Creative Commons
Zhihua Wang,

Mingmiao Xue,

Junqiang Liu

et al.

Journal of Cancer, Journal Year: 2024, Volume and Issue: 15(16), P. 5477 - 5491

Published: Jan. 1, 2024

ATP11A, a P-type ATPase, functions as flippases at the plasma membrane to maintain cellular function and vitality in several cancers. However, role of ATP11A gastric cancer remains unknown. This study aimed identify related biological behavior cancer, elucidate underlying mechanism.

Language: Английский

LncRNA MIR200CHG inhibits EMT in gastric cancer by stabilizing miR-200c from target-directed miRNA degradation DOI Creative Commons
Lina Zhu, Chengmei Huang, Chao Zhang

et al.

Nature Communications, Journal Year: 2023, Volume and Issue: 14(1)

Published: Dec. 8, 2023

Abstract Gastric cancer (GC) is a heterogeneous disease, threatening millions of lives worldwide, yet the functional roles long non-coding RNAs (lncRNAs) in different GC subtypes remain poorly characterized. Microsatellite stable (MSS)/epithelial-mesenchymal transition (EMT) most aggressive subtype associated with poor prognosis. Here, we apply integrated network analysis to uncover lncRNA heterogeneity between subtypes, and identify MIR200CHG as master regulator mediating EMT specifically MSS/EMT GC. The expression silenced by promoter hypermethylation, reverses mesenchymal identity cells vitro inhibits metastasis vivo. Mechanistically, not only facilitates biogenesis its intronic miRNAs miR-200c miR-141, but also protects from target-directed miRNA degradation (TDMD) through direct binding miR-200c. Our studies reveal landscape subtype-specific regulatory network, providing clinically relevant biological insights towards

Language: Английский

Citations

27

msBERT-Promoter: a multi-scale ensemble predictor based on BERT pre-trained model for the two-stage prediction of DNA promoters and their strengths DOI Creative Commons
Yazi Li, Xiaoman Wei, Qinglin Yang

et al.

BMC Biology, Journal Year: 2024, Volume and Issue: 22(1)

Published: May 30, 2024

A promoter is a specific sequence in DNA that has transcriptional regulatory functions, playing role initiating gene expression. Identifying promoters and their strengths can provide valuable information related to human diseases. In recent years, computational methods have gained prominence as an effective means for identifying promoter, offering more efficient alternative labor-intensive biological approaches.

Language: Английский

Citations

9

Exosomal lncRNAs as diagnostic and therapeutic targets in multiple myeloma DOI Creative Commons
Hong Yan, Nan Jiang, M Kellis

et al.

Frontiers in Oncology, Journal Year: 2025, Volume and Issue: 14

Published: Jan. 16, 2025

Multiple Myeloma (MM) is the second most common malignancy of hematopoietic system, accounting for approximately 10% all hematological malignancies, and currently, there no complete cure. Existing research indicates that exosomal long non-coding RNAs (lncRNAs) play a crucial regulatory role in initiation progression tumors, involving various interactions such as lncRNA-miRNA, lncRNA-mRNA, lncRNA-RNA binding proteins (RBP). Despite significant clinical application potential lncRNAs, this area still faces challenges due to their low abundance technical limitations. To our knowledge, review first comprehensively integrate elucidate three mechanisms action lncRNAs MM, propose therapeutic targets cases based on these mechanisms. We highlight latest advancements biomarkers targets, offering not only comprehensive analysis MM but also new perspectives methods future diagnosis treatment multiple myeloma.

Language: Английский

Citations

1

Long Non-Coding RNAs: Key Regulators of Tumor Epithelial/Mesenchymal Plasticity and Cancer Stemness DOI Creative Commons
Yuan Yuan,

Yun Tang,

Zeng Fang

et al.

Cells, Journal Year: 2025, Volume and Issue: 14(3), P. 227 - 227

Published: Feb. 5, 2025

Long non-coding RNAs (lncRNAs) are a class of RNA molecules with transcripts longer than 200 bp, which were initially thought to be noise from genomic transcription without biological function. However, since the discovery H19 in 1980 and Xist 1990, increasing evidence has shown that lncRNAs regulate gene expression at epigenetic, transcriptional, post-transcriptional levels through specific regulatory actions involved development cancer other diseases. Despite many being expressed lower those protein-coding genes less sequence conservation across species, have become an intense area research. They exert diverse functions such as inducing chromatin remodeling, recruiting transcriptional machinery, acting competitive endogenous for microRNAs, modulating protein–protein interactions. Epithelial–mesenchymal transition (EMT) is developmental process, associated embryonic development, wound healing, progression. In context oncogenesis, EMT program transiently activated confers migratory/invasive stem cell (CSC) properties tumor cells, crucial malignant progression, metastasis, therapeutic resistance. Accumulating revealed play roles regulation epithelial/mesenchymal plasticity (EMP) stemness. Here, we summarize emerging molecular mechanisms regulating EMP their effects on initiation progression CSCs. We also discuss potential diagnostic prognostic biomarkers targets.

Language: Английский

Citations

1

Long non-coding RNAs: Emerging regulators of invasion and metastasis in pancreatic cancer DOI Creative Commons
Mengmeng Shi, Rui Zhang, Hui Lyu

et al.

Journal of Advanced Research, Journal Year: 2025, Volume and Issue: unknown

Published: Feb. 1, 2025

The invasion and metastasis of pancreatic cancer (PC) are key factors contributing to disease progression poor prognosis. This process is primarily driven by EMT, which has been the focus recent studies highlighting role long non-coding RNAs (lncRNAs) as crucial regulators EMT. However, mechanisms lncRNAs influence invasive multifaceted, extending beyond EMT regulation alone. review aims characterize affecting in cancer. We summarize regulatory roles across multiple molecular pathways highlight their translational potential, considering implications for clinical applications diagnostics therapeutics. focuses on three principal scientific themes. First, we orchestrate various signaling pathways, such TGF-β/Smad, Wnt/β-catenin, Notch, regulate changes associated with thereby enhancing cellular motility invasivenes. Second, effects autophagy ferroptosis discuss exosomal tumor microenvironment behavior neighboring cells promote cell invasion. Third, emphasize RNA modifications (such m6A m5C methylation) stabilizing capacity mediate PC. Lastly, potential these findings, emphasizing inherent challenges using biomarkers therapeutic targets, while proposing prospective research strategies.

Language: Английский

Citations

1

Long non‐coding RNAs as key regulators of neurodegenerative protein aggregation DOI Creative Commons

Qi Xu,

Dan Liu,

Ling‐Qiang Zhu

et al.

Alzheimer s & Dementia, Journal Year: 2025, Volume and Issue: 21(2)

Published: Feb. 1, 2025

Abstract The characteristic events in neurodegenerative diseases (NDDs) encompass protein misfolding, aggregation, accumulation, and their related cellular dysfunction, synaptic function loss. While distinct proteins are implicated the pathological processes of different NDDs, process misfolding aggregation remains notably similar across various conditions. Specifically, undergo into beta‐folded (β‐folded) conformation, resulting formation insoluble amyloid proteins. Despite advancements comprehending certain facets this intricate remain incompletely elucidated. In recent years, concept that long non‐coding RNAs (lncRNAs) contribute to has gained recognition. LncRNAs influence aggregates by facilitating overexpression through regulation gene transcription translation, inhibiting degradation via lysosomal autophagic pathways, targeting aberrant modifications phase transitions A better understanding relationship between lncRNAs is an important step dissecting underlying molecular mechanisms will discovery new therapeutic targets strategies. Highlights NDDs marked leading dysfunction loss function. being involved β‐folded conformations forming consistent role attention, as they regulate inhibit degradation, target modifications. Understanding link crucial for uncovering developing targets.

Language: Английский

Citations

1

LncRNA-HMG incites colorectal cancer cells to chemoresistance via repressing p53-mediated ferroptosis DOI Creative Commons

Zechang Xin,

Chen-Yu Hu,

Chunfeng Zhang

et al.

Redox Biology, Journal Year: 2024, Volume and Issue: 77, P. 103362 - 103362

Published: Sept. 18, 2024

Language: Английский

Citations

7

Interactions between lncRNAs and cyclins/CDKs complexes; key players in determining cancer cell response to CDKs inhibitors DOI

Bahaa Ibrahim Saeed,

Abhinav Kumar, Enwa Felix Oghenemaro

et al.

Experimental Cell Research, Journal Year: 2025, Volume and Issue: 445(2), P. 114406 - 114406

Published: Jan. 4, 2025

Language: Английский

Citations

0

HybProm: An attention-assisted hybrid CNN-BiLSTM model for the interpretable prediction of DNA promoter DOI
Ruibang Luo, Jiawei Liu, Lixin Guan

et al.

Methods, Journal Year: 2025, Volume and Issue: 235, P. 71 - 80

Published: Feb. 8, 2025

Language: Английский

Citations

0

Bioinformatic analysis indicated that LINC01150 might be a novel neutrophil extracellular traps-related biomarker of gastric cancer DOI Creative Commons

Yang‐Yang Qian,

Min Xu,

Xinkun Huang

et al.

Scientific Reports, Journal Year: 2025, Volume and Issue: 15(1)

Published: March 6, 2025

Gastric cancer (GC) is a highly aggressive malignancy associated with poor prognosis, particularly in its advanced stages. Neutrophil extracellular traps (NETs) have been implicated progression and immune therapy responses; however, the role of NETs-related long non-coding RNAs (lncRNAs) GC remains poorly understood. This study used data from Cancer Genome Atlas (TCGA) previous research to identify lncRNAs GC. A prognostic signature comprising four (NlncSig) was developed validated, serving as predictor for patient survival response immunotherapy. The NlncSig correlated poorer outcomes high-risk patients demonstrated that those lower risk scores exhibited more favorable responses In vitro experiments confirmed LINC01150 enhances cell proliferation, migration, invasion. robust provides reliable tool predicting characteristics GC, potential guide personalized therapeutic approaches improve care.

Language: Английский

Citations

0