Genetic Factors and the Intestinal Microbiome Guide Development of Microbe-Based Therapies for Inflammatory Bowel Diseases DOI Creative Commons
Louis Cohen, Judy H. Cho, Dirk Gevers

et al.

Gastroenterology, Journal Year: 2019, Volume and Issue: 156(8), P. 2174 - 2189

Published: March 14, 2019

The intestinal microbiota is a dynamic community of bacteria, fungi, and viruses that mediates mucosal homeostasis physiology. Imbalances in the microbiome aberrant immune responses to gut bacteria can disrupt are associated with inflammatory bowel diseases (IBDs) humans colitis mice. We review genetic variants IBD their effects on microbiome, response, disease pathogenesis. which includes microbial antigens, adjuvants, metabolic products, affects development function mucosa, influencing gut. Therefore, strategies manipulate might be used treatment IBD. microbe-based therapies for potential engineer patients' microbiota. discuss how studies patients mouse models have advanced our understanding interactions between factors challenges Inflammatory include Crohn (CD) ulcerative (UC), chronic develop through complex among genetic, immune, environmental, factors.1Abraham C. Medzhitov R. Interactions host innate system microbes disease.Gastroenterology. 2011; 140: 1729-1737Abstract Full Text PDF PubMed Scopus (314) Google Scholar, 2Belkaid Y. Hand T.W. Role immunity inflammation.Cell. 2014; 157: 121-141Abstract (1124) 3Sun M. He Cong et al.Regulatory cells regulation response microbiota.Mucosal Immunol. 2015; 8: 969-978Crossref (95) Scholar Dysregulation any components this network result inflammation Genetic identified regulators altered IBD—many these control microbes.4Hall A.B. Tolonen A.C. Xavier R.J. Human variation disease.Nat Rev Genet. 2017; 18: 690-699Crossref (108) 5Luca F. Kupfer S.S. Knights D. al.Functional genomics host–microbiome humans.Trends 2018; 34: 30-40Abstract (0) Variants risk been NOD2, ATG16L1, CARD9, CLEC7A.6Khor B. Gardet A. Genetics pathogenesis disease.Nature. 474: 307-317Crossref (1187) genes detection perturb promote inflammation. 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Language: Английский

The Microbiota-Gut-Brain Axis DOI Open Access
John F. Cryan, Kenneth J. O’Riordan, Caitlin S.M. Cowan

et al.

Physiological Reviews, Journal Year: 2019, Volume and Issue: 99(4), P. 1877 - 2013

Published: Aug. 28, 2019

The importance of the gut-brain axis in maintaining homeostasis has long been appreciated. However, past 15 yr have seen emergence microbiota (the trillions microorganisms within and on our bodies) as one key regulators function led to appreciation a distinct microbiota-gut-brain axis. This is gaining ever more traction fields investigating biological physiological basis psychiatric, neurodevelopmental, age-related, neurodegenerative disorders. brain communicate with each other via various routes including immune system, tryptophan metabolism, vagus nerve enteric nervous involving microbial metabolites such short-chain fatty acids, branched chain amino peptidoglycans. Many factors can influence composition early life, infection, mode birth delivery, use antibiotic medications, nature nutritional provision, environmental stressors, host genetics. At extreme diversity diminishes aging. Stress, particular, significantly impact at all stages life. Much recent work implicated gut many conditions autism, anxiety, obesity, schizophrenia, Parkinson’s disease, Alzheimer’s disease. Animal models paramount linking regulation fundamental neural processes, neurogenesis myelination, microbiome activation microglia. Moreover, translational human studies are ongoing will greatly enhance field. Future focus understanding mechanisms underlying attempt elucidate microbial-based intervention therapeutic strategies for neuropsychiatric

Language: Английский

Citations

3470

The gut microbiota–brain axis in behaviour and brain disorders DOI
Lívia H. Morais, Henry L. Schreiber, Sarkis K. Mazmanian

et al.

Nature Reviews Microbiology, Journal Year: 2020, Volume and Issue: 19(4), P. 241 - 255

Published: Oct. 22, 2020

Language: Английский

Citations

1472

Regulation of Neurotransmitters by the Gut Microbiota and Effects on Cognition in Neurological Disorders DOI Open Access
Yijing Chen, Jinying Xu, Yu Chen

et al.

Nutrients, Journal Year: 2021, Volume and Issue: 13(6), P. 2099 - 2099

Published: June 19, 2021

Emerging evidence indicates that gut microbiota is important in the regulation of brain activity and cognitive functions. Microbes mediate communication among metabolic, peripheral immune, central nervous systems via microbiota–gut–brain axis. However, it not well understood how microbiome neurons mutually interact or these interactions affect normal functioning cognition. We summarize mechanisms whereby regulate production, transportation, neurotransmitters. also discuss dysbiosis affects function, especially neurodegenerative diseases such as Alzheimer’s disease Parkinson’s disease.

Language: Английский

Citations

543

Enlightening the taxonomy darkness of human gut microbiomes with a cultured biobank DOI Creative Commons
Chang Liu, Meng-Xuan Du,

Rexiding Abuduaini

et al.

Microbiome, Journal Year: 2021, Volume and Issue: 9(1)

Published: May 21, 2021

Abstract Background In gut microbiome studies, the cultured microbial resource plays essential roles, such as helping to unravel functions and host-microbe interactions. Although several major studies have been performed elucidate human microbiota, up 70% of Unified Human Gastrointestinal Genome species not date. Large-scale isolation identification well availability public are imperative for further characterizing functions. Results this study, we constructed a Gut Microbial Biobank (hGMB; homepage: hgmb.nmdc.cn ) through cultivation 10,558 isolates from 31 sample mixtures 239 fresh fecal samples healthy Chinese volunteers, deposited 1170 strains representing 400 different in culture collections International Depository Authority long-term preservation access worldwide. Following rules Code Nomenclature Prokaryotes, 102 new were characterized denominated, while 28 genera 3 families proposed. hGMB represented over 80% common dominant global 16S rRNA gene amplicon data ( n = 11,647) 24 “most-wanted” “medium priority” taxa proposed by Microbiome Project. We total sequenced 115 genomes novel 13 previously known species. Further silico analysis revealed that newly 22 uncultured (UHGG) contributed representatives potentially “dark taxa” had discovered UHGG. The nonredundant catalogs generated covered 50% functionally genes (KEGG orthologs) largest approximately 10% “most wanted” unknown proteins FUnkFams database. Conclusions A publicly accessible (hGMB) was established contained represents expands resources genomic repository adding species, genera, families, microbes.

Language: Английский

Citations

530

Interaction of the microbiota with the human body in health and diseases DOI Open Access
Safaa Altveş, Hatice Kübra Yıldız, Hasibe Cıngıllı Vural

et al.

Bioscience of Microbiota Food and Health, Journal Year: 2019, Volume and Issue: 39(2), P. 23 - 32

Published: Dec. 24, 2019

The human body contains many microorganisms, including a large number of bacteria, viruses, fungi, and protozoa, which are referred to as the microbiota. Compared with cells comprising body, that microbiota has been found be much larger. microbiome is defined microorganisms their genomes have shown contain about 100 times more genes than genome. affects vital functions in body. It contributes regulation immune system, digestion food, production vitamins such B12 K, metabolization xenobiotic materials, other tasks. Many factors affect biodiversity, diet, medicines antibiotics, relationships environment, pregnancy, age. Studies lack diversity leads diseases like autoimmune diabetes type I, rheumatism, muscular dystrophy, problems blood coagulation due vitamin disturbances transfer nerve B12, addition its involvement conditions cancer, memory disorders, depression, stress, autism, Alzheimer’s disease. aim this review summarize latest studies discussing relationship between health diseases.

Language: Английский

Citations

360

Functional dyspepsia DOI
Alexander C. Ford, Sanjiv Mahadeva, Florencia Carbone

et al.

The Lancet, Journal Year: 2020, Volume and Issue: 396(10263), P. 1689 - 1702

Published: Oct. 10, 2020

Language: Английский

Citations

355

A systematic review of gut microbiota composition in observational studies of major depressive disorder, bipolar disorder and schizophrenia DOI Creative Commons
Amelia J. McGuinness, Jessica A. Davis, Samantha L. Dawson

et al.

Molecular Psychiatry, Journal Year: 2022, Volume and Issue: 27(4), P. 1920 - 1935

Published: Feb. 22, 2022

Abstract The emerging understanding of gut microbiota as ‘metabolic machinery’ influencing many aspects physiology has gained substantial attention in the field psychiatry. This is largely due to overlapping pathophysiological mechanisms associated with both potential functionality and biological thought be underpinning mental disorders. In this systematic review, we synthesised current literature investigating differences composition people major psychiatric disorders, depressive disorder (MDD), bipolar (BD) schizophrenia (SZ), compared ‘healthy’ controls. We also explored across disorders an attempt elucidate commonalities microbial signatures these Following PRISMA guidelines, databases were searched from inception through December 2021. identified 44 studies (including a total 2510 cases 2407 controls) that met inclusion criteria, which 24 investigated MDD, seven BD, 15 SZ. Our syntheses provide no strong evidence for difference number or distribution (α-diversity) bacteria those However, relatively consistent reporting overall community (β-diversity) without specific bacterial taxa commonly including lower levels genera produce short-chain fatty acids (e.g. butyrate), higher lactic acid-producing bacteria, glutamate GABA metabolism. observed heterogeneity regards methodologies reporting. Further prospective experimental research using new tools robust guidelines hold promise improving our role brain health development interventions based on modification microbiota.

Language: Английский

Citations

322

Precision Nutrition and the Microbiome, Part I: Current State of the Science DOI Open Access
Susan Mills, Catherine Stanton, Jonathan A. Lane

et al.

Nutrients, Journal Year: 2019, Volume and Issue: 11(4), P. 923 - 923

Published: April 24, 2019

The gut microbiota is a highly complex community which evolves and adapts to its host over lifetime. It has been described as virtual organ owing the myriad of functions it performs, including production bioactive metabolites, regulation immunity, energy homeostasis protection against pathogens. These activities are dependent on quantity quality alongside metabolic potential, dictated by number factors, diet genetics. In this regard, microbiome malleable varies significantly from host. two features render candidate ‘organ’ for possibility precision microbiomics—the use biomarker predict responsiveness specific dietary constituents generate diets interventions optimal health. With in mind, two-part review investigates current state science terms influence components subsequent consequences health status, along with opportunities modulate improved potential components. particular, Part I, we examine development birth role We investigate poor-quality relation infection inflammation discuss diet-derived microbial metabolites negatively impact look at shaping components, namely protein, fat carbohydrates, composition.

Language: Английский

Citations

304

Targeted isolation and cultivation of uncultivated bacteria by reverse genomics DOI
Karissa L. Cross, James H. Campbell, Manasi Balachandran

et al.

Nature Biotechnology, Journal Year: 2019, Volume and Issue: 37(11), P. 1314 - 1321

Published: Sept. 30, 2019

Language: Английский

Citations

280

Landscapes of bacterial and metabolic signatures and their interaction in major depressive disorders DOI Creative Commons
Jian Yang, Peng Zheng, Yifan Li

et al.

Science Advances, Journal Year: 2020, Volume and Issue: 6(49)

Published: Dec. 3, 2020

Gut microbiome disturbances have been implicated in major depressive disorder (MDD). However, little is known about how the gut virome, microbiome, and fecal metabolome change, they interact MDD. Here, using whole-genome shotgun metagenomic untargeted metabolomic methods, we identified 3 bacteriophages, 47 bacterial species, 50 metabolites showing notable differences abundance between MDD patients healthy controls (HCs). Patients with were mainly characterized by increased of genus Bacteroides decreased genera Blautia Eubacterium These multilevel omics alterations generated a characteristic coexpression network. Disturbed microbial genes consistently mapped to amino acid (γ-aminobutyrate, phenylalanine, tryptophan) metabolism. Furthermore, combinatorial marker panel that robustly discriminated from HC individuals both discovery validation sets. Our findings provide deep insight into understanding roles disturbed ecosystem

Language: Английский

Citations

278