DNA Storage: The Future Direction for Medical Cold Data Storage DOI Creative Commons
Peilin Shen, Yi Zheng,

CongYu Zhang

et al.

Synthetic and Systems Biotechnology, Journal Year: 2025, Volume and Issue: 10(2), P. 677 - 695

Published: March 15, 2025

DNA storage, characterized by its durability, data density, and cost-effectiveness, is a promising solution for managing the increasing volumes in healthcare. This review explores state-of-the-art storage technologies, provides insights into designing system tailored medical cold data. We anticipate that practical approach will involve establishing regional, vitro centers can serve multiple hospitals. The immediacy of hinges on development novel, high-density, specialized coding methods. Established commercial techniques, such as chemical synthesis next-generation sequencing (NGS), along with mixed drying alkaline salts refined Polymerase Chain Reaction (PCR), potentially represent optimal options writing, reading, accessing, respectively. Data security could be promised integration traditional digital encryption steganography. Although breakthrough developments like artificial nucleotides nanostructures show potential, they remain laboratory research phase. In conclusion, viable preservation strategy near future.

Language: Английский

Methods and applications for single-cell and spatial multi-omics DOI Open Access
Katy Vandereyken, Alejandro Sifrim, Bernard Thienpont

et al.

Nature Reviews Genetics, Journal Year: 2023, Volume and Issue: 24(8), P. 494 - 515

Published: March 2, 2023

Language: Английский

Citations

626

Metastasis DOI Creative Commons

Stefanie Gerstberger,

Qingwen Jiang, Karuna Ganesh

et al.

Cell, Journal Year: 2023, Volume and Issue: 186(8), P. 1564 - 1579

Published: April 1, 2023

Language: Английский

Citations

369

Prime editing for precise and highly versatile genome manipulation DOI
Peter J. Chen, David R. Liu

Nature Reviews Genetics, Journal Year: 2022, Volume and Issue: 24(3), P. 161 - 177

Published: Nov. 7, 2022

Language: Английский

Citations

315

Past, present, and future of CRISPR genome editing technologies DOI Creative Commons

Martin Pacesa,

Oana Pelea, Martin Jínek

et al.

Cell, Journal Year: 2024, Volume and Issue: 187(5), P. 1076 - 1100

Published: Feb. 1, 2024

Genome editing has been a transformative force in the life sciences and human medicine, offering unprecedented opportunities to dissect complex biological processes treat underlying causes of many genetic diseases. CRISPR-based technologies, with their remarkable efficiency easy programmability, stand at forefront this revolution. In Review, we discuss current state CRISPR gene technologies both research therapy, highlighting limitations that constrain them technological innovations have developed recent years address them. Additionally, examine summarize landscape applications context health therapeutics. Finally, outline potential future developments could shape coming years.

Language: Английский

Citations

141

A mouse model with high clonal barcode diversity for joint lineage, transcriptomic, and epigenomic profiling in single cells DOI
Li Li, Sarah Bowling, Sean E. McGeary

et al.

Cell, Journal Year: 2023, Volume and Issue: 186(23), P. 5183 - 5199.e22

Published: Oct. 17, 2023

Language: Английский

Citations

84

Designing and executing prime editing experiments in mammalian cells DOI
Jordan L. Doman,

Alexander A. Sousa,

Peyton B. Randolph

et al.

Nature Protocols, Journal Year: 2022, Volume and Issue: 17(11), P. 2431 - 2468

Published: Aug. 8, 2022

Language: Английский

Citations

81

A reference cell tree will serve science better than a reference cell atlas DOI Creative Commons
Silvia Domcke, Jay Shendure

Cell, Journal Year: 2023, Volume and Issue: 186(6), P. 1103 - 1114

Published: March 1, 2023

Language: Английский

Citations

68

Prediction of prime editing insertion efficiencies using sequence features and DNA repair determinants DOI Creative Commons
Jonas Koeppel, Juliane Weller, Elin Madli Peets

et al.

Nature Biotechnology, Journal Year: 2023, Volume and Issue: 41(10), P. 1446 - 1456

Published: Feb. 16, 2023

Most short sequences can be precisely written into a selected genomic target using prime editing; however, it remains unclear what factors govern insertion. We design library of 3,604 various lengths and measure the frequency their insertion four sites in three human cell lines, different editor systems varying DNA repair contexts. find that length, nucleotide composition secondary structure sequence all affect rates. also discover 3' flap nucleases TREX1 TREX2 suppress longer sequences. Combining features machine learning model, we predict relative insertions site with R = 0.70. Finally, demonstrate how our accurate prediction user-friendly software help choose codon variants common fusion tags insert at high efficiency, provide catalog empirically determined rates for over hundred useful

Language: Английский

Citations

50

Chromatin context-dependent regulation and epigenetic manipulation of prime editing DOI Creative Commons
Xiaoyi Li, Wei Chen, Beth Martin

et al.

Cell, Journal Year: 2024, Volume and Issue: 187(10), P. 2411 - 2427.e25

Published: April 11, 2024

We set out to exhaustively characterize the impact of cis-chromatin environment on prime editing, a precise genome engineering tool. Using highly sensitive method for mapping genomic locations randomly integrated reporters, we discover massive position effects, exemplified by editing efficiencies ranging from ∼0% 94% an identical target site and edit. Position effects efficiency are well predicted chromatin marks, e.g., positively H3K79me2 negatively H3K9me3. Next, developed multiplex perturbational framework assess interaction trans-acting factors with outcomes. Applying this DNA repair factors, identify HLTF as context-dependent repressor editing. Finally, several lines evidence suggest that active transcriptional elongation enhances Consistent this, show can robustly decrease or increase preceding it CRISPR-mediated silencing activation, respectively.

Language: Английский

Citations

29

Spatiotemporal omics for biology and medicine DOI
Longqi Liu, Ao Chen, Yuxiang Li

et al.

Cell, Journal Year: 2024, Volume and Issue: 187(17), P. 4488 - 4519

Published: Aug. 1, 2024

Language: Английский

Citations

29