medRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: Nov. 23, 2023
ABSTRACT
Despite
the
notable
clinical
impact,
recent
molecular
epidemiology
regarding
third-generation
cephalosporin-resistant
Klebsiella
pneumoniae
(3GC-R
Kp
)
in
United
States
remains
limited.
We
performed
whole
genome
sequencing
of
3GC-R
bacteremia
isolates
collected
from
March
2016
to
May
2022
at
a
tertiary
care
cancer
center
Houston,
TX
using
Illumina
and
Oxford
Nanopore
Technologies
platforms.
A
comprehensive
comparative
genomic
analysis
was
dissect
population
structure,
transmission
dynamics,
pan-genomic
signatures
our
population.
Of
194
bacteremias
that
occurred
during
study
timeframe,
we
were
able
analyze
153
(79%)
isolates,
126
initial
27
recurrent
respectively.
While
belonging
widely
prevalent
clonal
group
(CG)
258
rarely
observed,
predominant
group,
CG307,
accounted
for
37
(29%)
index
displayed
significant
correlation
(Pearson
test
P
-value
=
0.03)
with
annual
frequency
bacteremia.
Within
CG307
cohort,
89%
(33/37)
belong
global
rather
than
previously
described
Texas-specific
clade.
Strikingly,
identified
new
sub-clade
(
i.e.,
cluster
1
isolates)
comprised
18
characterized
by
chromosomally-encoded
bla
SHV-205
unique
accessory
content.
This
detected
various
regions,
sequences
24
additional
strains
becoming
recently
available
NCBI
SRA
database.
Collectively,
this
underscores
emergence
dissemination
distinct
is
cause
among
patients
seen
has
been
isolated
throughout
States.
DATA
SUMMARY
WGS
data
sequenced
period
submitted
can
be
accessed
within
BioProject
PRJNA648389.
previous
carbapenem
non-susceptible
Enterobacterales
PRJNA836696.
Assembly
information
BioAccession
numbers
are
provided
Table
S1.
IMPACT
STATEMENT
Infections
due
3
rd
generation
cephalosporin
resistant
considered
most
urgent
public
health
threats.
However,
studies
on
Our
indicates
preponderance
genetically
diverse
harboring
key
antimicrobial
resistance
determinant
CTX-M-15
institution.
Importantly,
however,
evidence
long
duration
highly
related
CG29
specific
clusters
Interestingly,
pandemic
CG258
lineage
cohort
did
not
detect
more
two
lineage.
found
90%
belonged
novel,
nested-population
“global”
clade
contrast
commonly
“Texas-specific”
circulated
region.
searched
database
markers
novel
causing
invasive
infections
other
locations
across
highlights
shifting
dynamics
K.
necessity
continue
AMR
surveillance
order
identify
emerging
high-risk
populations.
PeerJ,
Journal Year:
2024,
Volume and Issue:
12, P. e17328 - e17328
Published: May 17, 2024
Nanotechnology
and
nanoparticles
have
gained
massive
attention
in
the
scientific
community
recent
years
due
to
their
valuable
properties.
Among
various
AgNPs
synthesis
methods,
microbial
approaches
offer
distinct
advantages
terms
of
cost-effectiveness,
biocompatibility,
eco-friendliness.
In
present
research
work,
investigators
synthesized
three
different
types
silver
(AgNPs),
namely
AgNPs-K,
AgNPs-M,
AgNPs-E,
by
using
Klebsiella
pneumoniae
(MBC34),
Micrococcus
luteus
(MBC23),
Enterobacter
aerogenes
(MBX6),
respectively.
The
morphological,
chemical,
elemental
features
were
analyzed
UV-Vis
spectroscopy
(UV-Vis),
Fourier
transform-infrared
(FTIR),
X-ray
diffraction
(XRD),
field
emission
scanning
electron
microscope
(FESEM)
energy-dispersive
(EDX).
absorbance
peaks
obtained
at
475,
428,
503
nm
for
XRD
analysis
confirmed
crystalline
nature
AgNPs,
having
26.2°,
32.1°,
47.2°.
At
same
time,
FTIR
showed
bands
599,
963,
1,693,
2,299,
2,891,
3,780
cm
−1
all
indicating
presence
bacterial
biomolecules
with
developed
AgNPs.
size
morphology
varied
from
10
several
microns
exhibited
spherical
porous
sheets-like
structures.
percentage
Ag
37.8%
(wt.%)
61.6%,
i.e
.,
highest
AgNPs-K
lowest
AgNPs-M.
Furthermore,
potential
environmental
remediation,
AgNPs-M
exhibiting
removal
efficiency
(19.24%
120
min)
methyl
orange
dye
simulated
wastewater.
Further,
evaluated
wastewater,
where
was
19.24%
min
Antibacterial
assessment
against
both
Gram-positive
(GPB)
Bacillus
subtilis
B.
cereus
(MBC24),
Gram-negative
bacteria
Enterococcus
faecalis
(MBP13)
revealed
promising
results,
largest
zone
inhibition
(12
mm)
GPB
megaterium
.
Such
investigation
exhibits
diverse
applications
remediation
antibacterial
therapy-based
BMC Genomics,
Journal Year:
2025,
Volume and Issue:
26(1)
Published: March 31, 2025
The
main
issue
of
the
Klebsiella
pneumoniae
species
complex
(KpSC)
research
in
clinical
settings
is
accurate
identification
and
differentiation
closely
related
within
this
complex.
Moreover,
emergence
spread
carbapenem-resistant
K.
(CRKP)
represent
a
significant
public
health
threat
due
to
limited
treatment
options
high
mortality
rates.
Understanding
genetic
basis
resistance
virulence
crucial
for
developing
effective
infection
control
strategies.
In
work,
genomic
epidemiology
antimicrobial
profile
KpSC
isolates
from
Wenzhou,
China,
was
investigated
fully
understand
implications
settings.
We
conducted
comprehensive
analysis
156
collected
tertiary
hospital
China
over
three-year
period
(2019–2021).
Antimicrobial
susceptibility
testing
performed
according
CLSI
standards.
Whole-genome
sequencing
(WGS)
subsequent
bioinformatic
analyses
were
identify
genes,
plasmid
types,
factors.
Phylogenetic
relationships
determined
using
maximum-likelihood
analysis.
All
CRKP
exhibited
levels
carbapenems,
cephalosporins,
aminoglycosides.
most
prevalent
carbapenemase
genes
blaKPC−2
(100%),
with
associations
between
ST11.
revealed
considerable
diversity,
50
sequence
types
(STs)
present.
A
subset
harbored
both
hypervirulence
including
rmpA,
rmpA2,
siderophore
systems,
which
associated
potential
higher
pathogenesis.
This
study
provides
novel
insights
into
molecular
highlighting
coexistence
factors
isolates.
findings
underscore
importance
continuous
surveillance
targeted
therapeutic
strategies
combat
infections.
Our
fills
critical
gaps
current
understanding
offers
valuable
data
global
comparative
studies,
contributing
development
measures.
Genomic
thus
local
risk
mapping
informs
necessary
adaptions
implementation
Microorganisms,
Journal Year:
2025,
Volume and Issue:
13(4), P. 886 - 886
Published: April 12, 2025
Salmonella
Dublin
(S.
Dublin)
and
Typhimurium
Typhimurium)
are
commonly
linked
to
bovine
salmonellosis.
S.
is,
however,
considered
a
bovine-adapted
serovar
for
primarily
infecting
thriving
in
cattle.
Using
(a
generalist
serovar)
as
benchmark,
this
study
investigates
genomic
factors
contributing
Dublin’s
adaptation
cattle
hosts
the
U.S.
A
total
of
1337
787
whole-genome
sequences
from
sources
were
analyzed
with
CARD
(version
4.0.0),
ARG-NOTT
6),
AMRfinderPlus
4.0.3)
antimicrobial
resistance
(AMR)
genes;
VFDB
virulence
AMRFinderPlus
stress
Plasmidfinder
plasmids.
Existing
clonal
groups
among
isolates
two
serovars
also
investigated
using
Hierarchical
Clustering
Core
Genome
Multi-Locus
Sequence
Typing
(HierCC-cgMLST)
model.
The
results
revealed
minimal
variation
isolates.
Comparatively,
IncX1
plasmid
was
somewhat
exclusively
identified
each
carried
an
average
four
plasmids
(p-value
<
0.05).
Furthermore,
exhibited
higher
prevalence
AMR
genes
against
key
antimicrobials,
including
aminoglycosides,
beta-lactams,
tetracyclines,
sulfonamides,
used
production.
Additionally,
Type
VI
secretion
system
tssJKLM
hcp2/tssD2,
essential
colonization,
found
over
50%
these
possessing
that
confer
heavy
metal
stressors,
like
mercury.
These
findings
suggest
is
supported
by
conserved
genetic
makeup
enriched
genes,
factors,
stress-related
enabling
it
colonize
persist
gut.
Nature Communications,
Journal Year:
2025,
Volume and Issue:
16(1)
Published: Jan. 22, 2025
Microbial
species
must
compete
for
space
and
nutrients
to
persist
in
the
gastrointestinal
(GI)
tract,
our
understanding
of
complex
pathobiont-microbiota
interactions
is
far
from
complete.
Klebsiella
pneumoniae,
a
problematic,
often
drug-resistant
nosocomial
pathogen,
can
colonize
GI
tract
asymptomatically,
serving
as
an
infection
reservoir.
To
provide
insight
on
how
K.
pneumoniae
interacts
with
resident
gut
microbiome,
we
conduct
transposon
mutagenesis
screen
using
murine
model
colonization
intact
microbiota.
Among
genes
identified
were
those
encoding
type
VI
secretion
system
(T6SS),
which
mediates
contact-dependent
killing
gram-negative
bacteria.
From
several
approaches,
demonstrate
that
T6SS
critical
colonization.
Metagenomics
vitro
assays
reveal
reduces
Betaproteobacteria
T6SS-dependent
manner,
thus
identifying
specific
targeted
by
pneumoniae.
We
further
show
gene
expression
controlled
transcriptional
regulators
only
occurs
under
conditions
mimic
environment.
By
enabling
thrive
gut,
indirectly
contributes
pathogenic
potential
this
organism.
These
observations
advance
molecular
successfully
colonizes
tract.
Through
metagenomics,
Bray
et
al.
interacting
microbiota
partners
revealed
role
its
colonization,
t6ss
transcription
occurring
GI-mimetic
conditions.
Infection and Immunity,
Journal Year:
2024,
Volume and Issue:
92(9)
Published: April 10, 2024
ABSTRACT
Bacterial
infections
pose
a
significant
global
health
threat,
accounting
for
an
estimated
7.7
million
deaths.
Hospital
outbreaks
driven
by
multi-drug-resistant
pathogens,
notably
Klebsiella
pneumoniae
(
K.
),
are
of
grave
concern.
This
opportunistic
pathogen
causes
pneumonia,
urinary
tract
infections,
and
bacteremia,
particularly
in
immunocompromised
individuals.
The
rise
hypervirulent
adds
complexity,
as
it
increasingly
infects
healthy
Recent
epidemiological
data
suggest
that
asymptomatic
gastrointestinal
carriage
serves
reservoir
the
same
individual
allows
host-to-host
transmission
via
fecal-oral
route.
review
focuses
on
’s
colonization,
delving
into
evidence,
current
animal
models,
molecular
colonization
mechanisms,
protective
role
resident
gut
microbiota.
Moreover,
sheds
light
vivo
high-throughput
approaches
have
been
crucial
identifying
factors
colonization.
comprehensive
exploration
aims
to
enhance
our
understanding
pathogenesis,
guiding
future
intervention
prevention
strategies.
Infection and Drug Resistance,
Journal Year:
2023,
Volume and Issue:
Volume 16, P. 6911 - 6922
Published: Oct. 1, 2023
Abstract:
Bacteria
communicate
with
their
surroundings
through
diverse
secretory
systems,
and
the
recently
discovered
Type
VI
Secretion
System
(T6SS)
has
gained
significant
attention.
Klebsiella
pneumoniae
(K.
pneumoniae)
,
an
opportunistic
pathogen
known
for
causing
severe
infections
in
both
hospital
animal
settings,
possesses
this
intriguing
T6SS.
This
system
equips
K.
a
formidable
armory
of
protein-based
weaponry,
enabling
delivery
toxins
into
neighboring
cells,
thus
granting
substantial
competitive
advantage.
Remarkably,
T6SS
also
been
associated
pneumoniae’s
ability
to
form
biofilms
acquire
resistance
against
antibiotics.
However,
precise
effects
on
functions
remain
inadequately
studied,
despite
research
efforts
understand
intricacies
these
mechanisms.
comprehensive
review
aims
provide
overview
current
knowledge
regarding
biological
regulatory
mechanisms
pneumoniae.
Keywords:
T6SS,
competition,
drug
resistance,
virulence
Frontiers in Public Health,
Journal Year:
2023,
Volume and Issue:
10
Published: Jan. 12, 2023
Introduction
The
emergence
of
bacterial
pathogens
in
environmental
hosts
represents
a
major
risk
to
public
health.
This
study
aimed
at
characterizing
seven
novel
strains
K.
quasipneumoniae
using
genomic
approach
which
was
misidentified
by
phenotypic
methods
previous
batch
27
species
thought
be
pneumoniae
.
Methods
Whole-genome
sequencing
performed
the
Illumina
platform,
and
generated
raw
reads
were
de
novo
assembled.
Comparative
genomic,
resistome,
virulome,
mobilome,
phylogeny
then
investigated
dierent
bioinformatics
tools.
Results
Six
identified
as
subsp
similipneumoniae
one
subsp.
All
isolates
resistant
ampicillin,
cephalexin,
amoxicillin-clavulanic
acid
harbored
fosA
,
bla
OKP
types,
oqxB
oqxA
genes.
One
isolate
additionally
gene
cassettes
consisting
SHV−1
OXA−1
aac(6
′
)-Ib-cr,
catB
aminoglycoside-modifying
enzyme
aph(3”)-Ia
bracketed
two
insertion
elements.
Plasmid
analyses
showed
that
IncFIB
K
most
prevalent
plasmid,
circulating
six
isolates,
while
exhibited
different
plasmids.
have
virulence
genes
responsible
for
capsule
formation,
lipopolysaccharide,
iron
uptake
aerobactin
(
iutA
),
salmochelins
iroE,
iroN
enterobactin
siderophore,
adherence,
biofilm
formation
mrkA,
mrkB,
mrkC,
mrkD,
mrkF
mrkH
).
Conclusion
Our
highlights
ecology
transmission
(which
ability
disseminate
other
sources
including
animals)
outside
clinical
setting
contribution
water,
vegetables,
table
surfaces
potential
reservoirs
farm-to-fork
disease
via
local
markets
Khartoum,
Sudan.