bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Nov. 24, 2024
Atlantic
salmon
(
Salmo
salar
)
when
exposed
to
heat
stress
have
reduced
voluntary
feeding
and
exhibit
changes
in
digesta
consistency.
This
study
was
performed
determine
what
bacterial
species
occur
the
overall
abundance
gut
microbiome
stressed
salmon.
For
this
seawater
tanks
at
15°C
were
fed
for
2
4
weeks.
Tank
temperatures
increased
19°C
until
abated
which
point
tank
cooled
At
end
of
each
temperature
phase
fish
stripped
feces
profiles
determined
using
16S
rRNA
V1-V3
metabarcoding.
The
experiment
repeated
three
times
successive
years.
Vibrionaceae
comprised
most
reads
after
warm
completed.
prominent
levels
accompanied
by
a
large
predominance
cast
(sloughed
intestinal
mucosa)
containing
fecal
samples.
qPCR
estimated
cell
populations
1.9-3.4
log
units/g
but
slightly
decreased
0.3-1.1
recovery
phase.
results
indicated
induced
inappetence
corresponds
production
Vibrionaceae.
colonizing
should
be
focus
studies
on
microbiology
thermally
dysbiosis
Journal of the World Aquaculture Society,
Journal Year:
2023,
Volume and Issue:
54(2), P. 343 - 363
Published: March 25, 2023
Abstract
Over
the
past
20
years,
substantial
progress
has
been
made
in
improving
feeds
and
feeding
technologies
for
most
aquaculture
species.
Notable
improvements
feed
conversion
efficiency
(through
a
better
understanding
of
requirements
improved
management)
ingredient
sustainability
increased
capability
to
use
wider
range
ingredients)
have
achieved.
While
advances
many
main
species,
there
is
still
much
be
done
defining
requirements,
especially
species
being
farmed
developing
world.
Gains
are
slowing
developed
but
potential
gains
appreciable
less
There
growing
need
more
precisely
prescribe
required
levels
essential
nutrients
various
additives
diet
based
on
age,
genotype,
environment,
immune
status
deliver
“precision
nutrition”
approach
farming
further
diversify
our
options
provide
greater
resilience,
as
different
sources,
including
possible
climate
change
impacts,
becoming
issue.
demand
biocircularity
supply
chains.
Ultimately,
what
needed
sustain
future
needs
sustainable
sources
cost‐effective
protein,
some
amino
acid
additives,
omega‐3
fatty
resources,
minerals
vitamin
additives.
The
increasing
new
varied
resources
will
ensure
that
food
safety
remains
an
important
issue
throughout
Feed
manufacturing
evolved
from
simplistic
exercise
highly
complex
science
with
state‐of‐the‐art
engineering,
its
application
not
consistent
across
all
sectors,
widespread
pelleting,
mash,
trash
fish
Similarly,
management
also
dichotomized
between
world,
high
reliance
manual
skilled
labor
whereas
advanced
systems
increasingly
reliant
automated
computer‐controlled
systems.
Aquaculture,
Journal Year:
2023,
Volume and Issue:
567, P. 739256 - 739256
Published: Jan. 15, 2023
Aquaculture
is
one
of
the
world's
fastest
growing
food-producing
sectors,
providing
more
than
half
all
fish
consumed
globally
for
human
nutrition.
However,
to
maintain
such
growth
and
meet
increasing
demand
aquatic
food,
sustainable
raw
materials
feeds
are
needed.
In
this
regard,
insects
represent
most
promising
alternatives
meal
(FM)
protein
source
use
in
aquafeeds.
addition
protein,
contain
bioactive
compounds,
as
chitin,
which
a
natural
polysaccharide
abundantly
present
pupal
exuviae
some
insects.
Studies
have
shown
that
dietary
chitin
or
its
derivate
chitosan
acts
prebiotic
thus
modulating
gut
microbial
communities
fish.
Accordingly,
study
aimed
evaluate
effect
two
waste
products
rich
i.e.,
shrimp
head
(SHM),
insect
(Hermetia
illucens)
on
microbiota
rainbow
trout
(Oncorhynchus
mykiss).
Three
isoproteic,
isolipidic,
isoenergetic
diets
containing
either
FM,
SHD,
combination
FM
1.6%
(PEM)
were
tested
through
91-day
feeding
trial.
At
end
experiment,
no
differences
final
mean
body
weight,
specific
rate,
feed
conversion
ratio
values
observed
between
experimental
groups.
Mortality
was
<1%
it
did
not
correlate
with
diet
entire
duration
modulatory
detected.
Indeed,
bacterial
species
richness
improved
by
including
exuviae.
particular,
Firmicutes
Actinobacteria
phyla,
mainly
represented
Bacillus,
Facklamia,
Brevibacterium,
Corynebacterium
genera,
enriched
receiving
These
genera
chitinolytic
short-chain
fatty
acids
(SCFAs)-producing
bacteria.
SCFAs
production
confirmed
gas
chromatography
analysis,
detected
highest
amount
butyrate
feces
fed
meal.
Functional
inference
analysis
intestinal
using
PICRUST
metagenome
prediction
tool,
showed
response
diet.
eleven
pathways
significantly
different
control
PEM
diet,
whereas
twenty
functional
traits
SHM
Overall,
our
data
from
insect's
represents
ingredient,
better
SHM,
positively
trout.
Animals,
Journal Year:
2023,
Volume and Issue:
13(10), P. 1633 - 1633
Published: May 14, 2023
Aquaculture
is
the
fastest-growing
agricultural
industry
in
world.
Fishmeal
an
essential
component
of
commercial
fish
diets,
but
its
long-term
sustainability
a
concern.
Therefore,
it
important
to
find
alternatives
fishmeal
that
have
similar
nutritional
value
and,
at
same
time,
are
affordable
and
readily
available.
The
search
for
high-quality
oil
has
interested
researchers
worldwide.
Over
past
20
years,
different
insect
meals
been
studied
as
potential
alternate
source
aquafeeds.
On
other
hand,
probiotics-live
microbial
strains-are
being
used
dietary
supplements
showing
beneficial
effects
on
growth
health
status.
Fish
gut
microbiota
plays
significant
role
nutrition
metabolism,
which
affects
number
physiological
functions,
including
development,
immune
regulation,
pathogen
resistance.
One
key
reasons
studying
possibility
modify
communities
inhabit
intestine
benefit
host
health.
development
DNA
sequencing
technologies
advanced
bioinformatics
tools
made
metagenomic
analysis
feasible
method
researching
microbes.
In
this
review,
we
analyze
summarize
current
knowledge
provided
by
studies
our
research
group
using
meal
probiotic
aquafeed
formulations
their
microbiota.
We
also
highlight
future
directions
make
proteins
sustainable
aquaculture
explore
challenges
associated
with
use
probiotics.
Insect
probiotics
will
undoubtedly
positive
effect
profitability
aquaculture.
Biology,
Journal Year:
2022,
Volume and Issue:
11(12), P. 1744 - 1744
Published: Nov. 30, 2022
Fish
genetically
selected
for
growth
(GS)
and
reference
(REF)
fish
were
fed
with
CTRL
(15%
FM,
5–7%
FO)
or
FUTURE
(7.5%
10%
poultry
meal,
2.2%
oil
+
2.5%
DHA-algae
oil)
diets
during
a
12-months
production
cycle.
Samples
from
initial
(t0;
November
2019),
intermediate
(t1;
July
2020)
final
(t2;
sampling
points
used
Illumina
16S
rRNA
gene
amplicon
sequencing
of
the
adherent
microbiota
anterior
intestine
(AI).
same
individuals
(t1)
also
expression
profiling
AI
by
RNA-seq,
subsequent
correlation
analyses
abundances.
Discriminant
indicated
gut
bacterial
succession
along
cycle
proliferation
some
valuable
taxa
facing
seasonality
different
developmental
stages.
An
effect
genetic
background
was
evidenced
time,
decreasing
through
progression
trial,
namely
GS
less
influenced
changes
in
diet
composition.
At
these
showed
wider
transcriptomic
landmarks
to
cope
changes.
Our
results
highlighted
an
enhanced
intestinal
sphingolipid
phospholipid
metabolism,
epithelial
turnover
motility
fish,
which
would
favour
their
improved
performance
despite
lack
association
Furthermore,
supported
involvement
down-regulated
pro-inflammatory
markers
boosting
extracellular
remodelling
response
bacterium.
Altogether,
findings
support
combined
action
microbiome
host
transcriptionally
mediated
effects
preserve
improve
health
function
scenario
potentiality.
FEMS Microbiology Ecology,
Journal Year:
2024,
Volume and Issue:
100(3)
Published: Feb. 14, 2024
Abstract
The
skin
of
fish
contains
a
diverse
microbiota
that
has
symbiotic
functions
with
the
host,
facilitating
pathogen
exclusion,
immune
system
priming,
and
nutrient
degradation.
composition
microbiomes
varies
across
species
in
response
to
variety
stressors,
however,
there
been
no
systematic
analysis
these
studies
evaluate
how
factors
shape
microbiomes.
Here,
we
examined
1922
from
36
included
98
nine
rearing
conditions
investigate
associations
between
microbiome,
species,
water
physiochemical
factors.
Proteobacteria,
particularly
class
Gammaproteobacteria,
were
present
all
marine
freshwater
Acinetobacter,
Aeromonas,
Ralstonia,
Sphingomonas
Flavobacterium
most
abundant
genera
within
microbiomes,
Alteromonas,
Photobacterium,
Pseudoalteromonas,
Psychrobacter
Vibrio
saltwater
fish.
Our
results
show
different
culturing
(rearing)
environments
have
small
but
significant
effect
on
bacterial
community
compositions.
Water
temperature,
pH,
dissolved
oxygen
concentration,
salinity
significantly
correlated
differences
beta-diversity
not
necessarily
alpha-diversity.
To
improve
study
comparability
provide
recommendations
for
approaches
analyses
sequencing
data
reproducibility.
Frontiers in Microbiology,
Journal Year:
2023,
Volume and Issue:
14
Published: Feb. 7, 2023
Gut
microbiota
play
important
roles
in
fish
health
and
growth
performance
the
microbiome
has
been
shown
to
be
a
biomarker
for
stress.
In
this
study,
we
surveyed
change
of
Chinook
salmon
(
Oncorhynchus
tshawytscha
)
gut
water
freshwater
recirculating
aquaculture
systems
(RAS)
7
months
evaluated
how
microbial
communities
were
influenced
by
performance.
The
diversity
significantly
increased
parallel
with
fish.
dominant
shifted
from
predominance
Firmicutes
Proteobacteria,
while
Proteobacteria
constantly
dominated
microbiota.
Photobacterium
sp.
was
persistently
major
community
member
during
whole
experiment
identified
as
core
farmed
salmon.
No
significant
variation
composition
observed
among
different
At
end
trial,
36
out
78
had
fluid
their
swim
bladders.
These
microbiomes
containing
elevated
proportions
Enterococcus,
Stenotrophomonas
,
Aeromonas,
Raoultella
.
Our
study
supports
growing
body
knowledge
about
beneficial
associated
modern
provides
additional
information
on
possible
links
between
dysbiosis
Animal Microbiome,
Journal Year:
2023,
Volume and Issue:
5(1)
Published: Aug. 10, 2023
Abstract
Background
Despite
the
long-established
importance
of
zebrafish
(
Danio
rerio
)
as
a
model
organism
and
their
increasing
use
in
microbiome-targeted
studies,
relatively
little
is
known
about
how
husbandry
practices
involving
diet
impact
gut
microbiome.
Given
microbiome’s
important
role
mediating
host
physiology
potential
for
to
drive
variation
microbiome
composition,
we
sought
clarify
three
different
dietary
formulations
that
are
commonly
used
facilities
We
compared
composition
microbiomes
approximately
60
AB
line
adult
(129-
214-day-old)
fed
each
throughout
lifespan.
Results
Our
analysis
finds
has
substantial
on
fish,
also
impacts
developmental
further
evaluated
214-day-old
fish
compositions
respond
exposure
common
laboratory
pathogen,
Mycobacterium
chelonae
,
whether
these
responses
differ
function
diet.
determines
manner
which
responds
M.
exposure,
especially
moderate
low
abundance
taxa.
Moreover,
histopathological
male
diets
differentially
infected
by
.
Conclusions
Overall,
our
results
indicate
drives
successional
development
well
its
sensitivity
exogenous
exposure.
Consequently,
investigators
should
carefully
consider
investigations,
when
integrating
across
studies
vary
Frontiers in Marine Science,
Journal Year:
2023,
Volume and Issue:
10
Published: June 15, 2023
The
capacity
of
utilising
a
single
cell
protein
(SCP)
ingredient
coming
from
Corynebacterium
glutamicum
was
assessed
on
adult
grey
mullet
(
Mugil
cephalus
)
reared
in
captive
conditions.
experiment
carried
out
using
triplicate
groups
68
g
average
initial
body
weight.
Three
diets,
SCP0,
SCP10
and
SCP20
with
increasing
inclusion
SCP
(0%,
10%
20%)
substitution
soybean,
poultry
fish
meal
were
formulated
to
contain
30%
protein,
fat
18.5
Mj/kg
feed
digestible
energy.
After
113
days,
fed
diets
presented
significantly
lower
growth
performance
significant
activity
the
alkaline
proteases
aminopeptidases
compared
diet
without
inclusion.
Gut
microbiota
appeared
modulated
by
being
dominated
at
phylum
level
Fusobacteria
SCP0
(51.1%),
while
(67.3%)
(53.2%)
Proteobacteria
dominant.
Data
evinces
deficiency
utilisation
as
cause
poor
diets.
A
hypothesis
has
been
proposed
that
an
incomplete
cell-wall
lysis
accounts
for
this
outcome
because
particular
organisation
digestive
system
(which
lack
acidic
stomach
digestion)
failing
development
functional
gizzard
(no
access
sand
conditions).
Even
though
outcomes
research
quite
unexpected,
they
will
improve
our
knowledge
flathead
provide
some
theoretical
basis
improved
low
FM
SBM
aquafeed
species.
FEMS Microbiology Ecology,
Journal Year:
2023,
Volume and Issue:
99(12)
Published: Oct. 25, 2023
Abstract
Aeromonas
hydrophila
is
a
major
pathogenic
species
that
causes
mass
mortality
in
various
freshwater
fish
including
hybrid
tilapia,
the
main
Israeli
aquaculture.
Our
hypothesis
was
A.
infection
may
cause
changes
microbiota
composition
of
internal
organs,
and
therefore
we
aimed
to
study
effect
by
injection
or
net
handling
on
compositions
intestine,
spleen,
liver.
Significant
differences
were
found
between
organs
diseased
healthy
both
experimental
setups.
Fusobacteriota
most
dominant
phylum
(∼70%,
liver).
Cetobacterium
abundant
genus
relatively
more
healthy,
compared
fish.
When
inoculated
injection,
it
only
spleen
liver
However,
experiment,
Vibrio
also
detected
fish,
demonstrating
coinfection
interactions.
Based
these
experiments,
conclude
indeed,
tilapia
trigger
bacterial
Aquaculture,
Journal Year:
2023,
Volume and Issue:
579, P. 740174 - 740174
Published: Oct. 5, 2023
In
intensive
Atlantic
salmon
aquaculture,
faecal
score
potentially
serves
as
a
generalised
indicator
of
gut
microbiome
diversity
and
composition
proxy
for
transit
time.
There
is
also
the
possible
application
to
detect
dysbiosis.
The
utility
using
scoring
assessing
commercially
farmed
fish
populations
may,
however,
be
impacted
by
rapid
temporal
changes
in
digestive
status
following
feeding
that,
yet,
has
not
been
considered.
To
help
inform
sampling
strategies
better
understand
fish,
this
study
documented
scores
bacterial
16S
rRNA
amplicon
sequence
profiles
over
24
h
event.
Samples
were
collected
from
two
marine
cohorts
different
seasons
(summer
winter),
comparisons
made
between
non-destructive
stripped
hindgut
faeces
(HS)
destructive
digesta
(HD)
hind
mucosa
(HM).
Average
largely
consistent
normal
(6
8
h)
day
winter,
but
much
more
variable
summer,
associated
with
faster
passage
dynamic
microbial
hours
after
feeding.
HS
samples
determined
valid
method
obtain
material
transient
communities
distal
intestine.
For
an
accurate
representation
both
resident
communities,
sample
types
should
It
recommended
that
studies
comparing
treatment
cohorts,
or
individuals
large
sets,
designed
capture
seasonal
effects
are
microbiome.