ACS Photonics,
Journal Year:
2025,
Volume and Issue:
unknown
Published: March 5, 2025
We
present
the
design
and
application
of
a
transient
absorption
microscope
for
imaging
protein
aggregates
at
early
stages
growth,
utilizing
widely
used
amyloid
marker
dye
Thioflavin
T
(ThT).
By
employing
femtosecond
laser
pulses
excitation
probing,
distinguishes
signals
from
free
ThT
molecules
bound
to
aggregates,
enabling
different
development.
Spatially
resolved
measurements
revealed
two
distinct
excited-state
lifetimes
in
presence
insulin
aggregates:
short
lifetime
(approximately
10
ps)
longer
(in
range
100–200
ps).
The
dominates
aggregation,
reflecting
binding
small,
disordered
or
amorphous
precursors.
As
aggregation
progresses,
contribution
increases,
corresponding
formation
larger,
more
ordered
structures.
This
observation
agrees
with
theoretical
models
formation,
where
serve
as
nucleation
sites
growth
mature
fibrils.
results
demonstrate
capability
microscopy
resolve
spatial
temporal
dynamics
aggregation.
approach
offers
potential
applications
study
amyloid-related
diseases,
including
characterization
inhibitors
pathological
deposits
tissue
samples.
Molecules,
Journal Year:
2020,
Volume and Issue:
25(7), P. 1659 - 1659
Published: April 3, 2020
The
structural
polymorphism
and
the
physiological
pathophysiological
roles
of
two
important
proteins,
β-amyloid
(Aβ)
tau,
that
play
a
key
role
in
Alzheimer’s
disease
(AD)
are
reviewed.
Recent
results
demonstrate
monomeric
Aβ
has
functions.
Toxic
oligomeric
assemblies
(AβOs)
may
decisive
AD
pathogenesis.
polymorph
fibrillar
(fAβ)
form
very
ordered
cross-β
structure
is
assumed
to
be
non-toxic.
Tau
monomers
also
have
several
actions;
however,
their
oligomerization
leads
toxic
oligomers
(TauOs).
Further
polymerization
probably
non-toxic
structures,
among
others
neurofibrillary
tangles
(NFTs).
Their
was
determined
by
cryo-electron
microscopy
at
atomic
level.
Both
AβOs
TauOs
initiate
neurodegenerative
processes,
interactions
crosstalk
determine
changes
AD.
(perhaps
AβO)
prionoid
character,
they
responsible
for
cell-to-cell
spreading
disease.
extra-
intracellular
(and
not
previously
hypothesized
amyloid
plaques
NFTs)
represent
novel
targets
drug
research.
Chemical Science,
Journal Year:
2021,
Volume and Issue:
12(19), P. 6652 - 6669
Published: Jan. 1, 2021
The
amlyoid-β
peptide
(Aβ)
is
closely
linked
to
the
development
of
Alzheimer's
disease.
Molecular
dynamics
(MD)
simulations
have
become
an
indispensable
tool
for
studying
behavior
this
at
atomistic
level.
General
key
aspects
MD
are
force
field
used
modeling
and
its
environment,
which
important
accurate
system
interest,
length
simulations,
determines
whether
or
not
equilibrium
reached.
In
study
we
address
these
points
by
analyzing
30-μs
acquired
Aβ40
using
seven
different
fields.
We
assess
convergence
based
on
various
structural
properties
NMR
fluorescence
spectroscopic
observables.
Moreover,
calculate
Markov
state
models
provide
unprecedented
view
thermodynamics
kinetics
amyloid-β
peptide.
This
further
allows
us
answers
pertinent
questions,
like:
fields
suitable
Aβ?
(a99SB-UCB
a99SB-ILDN/TIP4P-D);
what
does
Aβ
really
look
like?
(mostly
extended
disordered)
and;
how
long
it
take
attain
equilibrium?
(at
least
20-30
μs).
believe
analyses
presented
in
will
a
useful
reference
guide
questions
relating
structure
particular,
extension
other
similar
disordered
proteins.
Journal of the American Chemical Society,
Journal Year:
2023,
Volume and Issue:
145(33), P. 18340 - 18354
Published: Aug. 9, 2023
The
amyloid-β
(Aβ)
peptide
is
associated
with
the
development
of
Alzheimer's
disease
and
known
to
form
highly
neurotoxic
prefibrillar
oligomeric
aggregates,
which
are
difficult
study
due
their
transient,
low-abundance,
heterogeneous
nature.
To
obtain
high-resolution
information
about
oligomer
structure
dynamics
as
well
relative
populations
assembly
states,
we
here
employ
a
combination
native
ion
mobility
mass
spectrometry
molecular
simulations.
We
find
that
formation
Aβ
oligomers
dependent
on
presence
specific
β-hairpin
motif
in
sequence.
Oligomers
initially
grow
spherically
but
start
extended
linear
aggregates
at
states
larger
than
those
tetramer.
population
could
be
notably
increased
by
introducing
an
intramolecular
disulfide
bond,
prearranges
hairpin
conformation,
thereby
promoting
structures
preventing
conversion
into
mature
fibrils.
Conversely,
truncating
one
β-strand-forming
segments
decreased
propensity
thus
population,
removed
entirely,
aggregation
peptide.
propose
observed
state
related
antiparallel
sheet
state,
then
nucleates
amyloid
state.
These
studies
provide
mechanistic
understanding
earliest
steps
suggest
inhibition
folding
conformation
viable
strategy
for
reducing
amount
toxic
oligomers.
Journal of the American Chemical Society,
Journal Year:
2023,
Volume and Issue:
145(7), P. 4177 - 4186
Published: Feb. 10, 2023
Disease-associated
progression
of
protein
dysfunction
is
typically
determined
by
an
interplay
transition
pathways
leading
to
liquid–liquid
phase
separation
(LLPS)
and
amyloid
fibrils.
As
LLPS
introduces
another
layer
complexity
into
fibrillization
metastable
proteins,
a
need
for
tunable
model
systems
study
these
intertwined
processes
has
emerged.
Here,
we
demonstrate
the
LLPS/fibrillization
properties
family
chimeric
peptides,
ACC1–13Kn,
in
which
highly
amyloidogenic
fragment
insulin
(ACC1–13)
merged
with
oligolysine
segments
various
lengths
(Kn,
n
=
8,
16,
24,
32,
40).
ACC1–13Kn
are
triggered
ATP
through
Coulombic
interactions
Kn
fragments.
ACC1–13K8
ACC1–13K16
form
fibrils
after
short
lag
without
any
evidence
LLPS.
However,
case
three
longest
triggers
instantaneous
followed
disappearance
droplets
occurring
in-phase
formation
The
kinetics
stability
mature
co-aggregates
sensitive
ionic
strength,
indicating
that
electrostatic
play
pivotal
role
selecting
LLPS-fibrillization
pathway.
Densely
packed
characterize
ACC1–13Kn–ATP
render
them
hydrostatic
pressure
due
solvent
electrostriction,
as
demonstrated
infrared
spectroscopy.
Using
atomic
force
microscopy
imaging
rapidly
frozen
samples,
early
within
single
liquid
droplets,
starting
at
droplet/bulk
interface
bent
fibers.
A
hypothetical
molecular
scenario
underlying
emergence
LLPS-to-fibrils
pathway
system
been
put
forward.
Nature Communications,
Journal Year:
2023,
Volume and Issue:
14(1)
Published: Feb. 25, 2023
Crowding
effects
are
crucial
to
maintaining
functionality
in
biological
systems,
but
little
is
known
about
their
role
analogous
artificial
counterparts.
Within
the
growing
field
of
supramolecular
polymer
science,
crowding
have
hitherto
remained
underappreciated.
Herein,
we
show
that
exhibit
strong
and
distinct
control
over
kinetics,
accessible
pathways
final
outcomes
polymerisation
processes.
In
presence
a
pre-formed
as
agent,
model
dramatically
changes
its
self-assembly
behaviour
undergoes
morphological
transformation
from
bundled
fibres
into
flower-like
hierarchical
assemblies,
despite
no
co-assembly
taking
place.
Notably,
this
new
pathway
can
only
be
accessed
crowded
environments
when
agent
exhibits
one-dimensional
morphology.
These
results
allow
accessing
diverse
morphologies
properties
polymers
pave
way
towards
better
understanding
high-precision
nature.
International Journal of Molecular Sciences,
Journal Year:
2023,
Volume and Issue:
24(6), P. 5383 - 5383
Published: March 11, 2023
Alzheimer’s
disease
(AD)
is
an
incurable,
progressive
neurodegenerative
disorder.
AD
a
complex
and
multifactorial
that
responsible
for
60–80%
of
dementia
cases.
Aging,
genetic
factors,
epigenetic
changes
are
the
main
risk
factors
AD.
Two
aggregation-prone
proteins
play
decisive
role
in
pathogenesis:
β-amyloid
(Aβ)
hyperphosphorylated
tau
(pTau).
Both
them
form
deposits
diffusible
toxic
aggregates
brain.
These
biomarkers
Different
hypotheses
have
tried
to
explain
pathogenesis
served
as
platforms
drug
research.
Experiments
demonstrated
both
Aβ
pTau
might
start
processes
necessary
cognitive
decline.
The
two
pathologies
act
synergy.
Inhibition
formation
has
been
old
target.
Recently,
successful
clearance
by
monoclonal
antibodies
raised
new
hopes
treatments
if
detected
at
early
stages.
More
recently,
novel
targets,
e.g.,
improvements
amyloid
from
brain,
application
small
heat
shock
(Hsps),
modulation
chronic
neuroinflammation
different
receptor
ligands,
microglial
phagocytosis,
increase
myelination
revealed