Advances in the Study of Metabolomics and Metabolites in Some Species Interactions DOI Creative Commons
Rui Liu,

Zheng-Xue Bao,

Pei‐Ji Zhao

et al.

Molecules, Journal Year: 2021, Volume and Issue: 26(11), P. 3311 - 3311

Published: May 31, 2021

In the natural environment, interactions between species are a common phenomena. The mechanisms of interaction different mainly studied using genomic, transcriptomic, proteomic, and metabolomic techniques. Metabolomics is crucial part system biology based on precision instrument analysis. last decade, emerging field metabolomics has received extensive attention. not only provides qualitative quantitative method for studying species, but also helps clarify defense host pathogen, to explore new metabolites with various biological activities. This review focuses methods progress interspecies metabolomics. Additionally, prospects challenges discussed.

Language: Английский

Mass spectrometry-based metabolomics in microbiome investigations DOI
Anelize Bauermeister, Helena Mannochio-Russo, Letícia V. Costa‐Lotufo

et al.

Nature Reviews Microbiology, Journal Year: 2021, Volume and Issue: 20(3), P. 143 - 160

Published: Sept. 22, 2021

Language: Английский

Citations

328

Microalgal-bacterial consortia: From interspecies interactions to biotechnological applications DOI
Bing Zhang, Li Wei,

Yuan Guo

et al.

Renewable and Sustainable Energy Reviews, Journal Year: 2019, Volume and Issue: 118, P. 109563 - 109563

Published: Nov. 17, 2019

Language: Английский

Citations

316

Recent advances in the application of metabolomics for food safety control and food quality analyses DOI
Shubo Li, Yufeng Tian,

Pingyingzi Jiang

et al.

Critical Reviews in Food Science and Nutrition, Journal Year: 2020, Volume and Issue: 61(9), P. 1448 - 1469

Published: May 22, 2020

As one of the omics fields, metabolomics has unique advantages in facilitating understanding physiological and pathological activities biology, physiology, pathology, food science. In this review, based on developments analytical chemistry tools, cheminformatics, bioinformatics methods, we highlight current applications safety, authenticity quality, traceability. Additionally, combined use with other techniques for "foodomics" is comprehensively described. Finally, latest advances, practical challenges limitations, requirements related to application are critically discussed, providing new insight into analysis.

Language: Английский

Citations

287

Metabolomics in the Context of Plant Natural Products Research: From Sample Preparation to Metabolite Analysis DOI Creative Commons
Mohamed A. Salem, Leonardo Perez de Souza, Ahmed Serag

et al.

Metabolites, Journal Year: 2020, Volume and Issue: 10(1), P. 37 - 37

Published: Jan. 15, 2020

Plant-derived natural products have long been considered a valuable source of lead compounds for drug development. Natural extracts are usually composed hundreds to thousands metabolites, whereby the bioactivity can be represented by synergism between several metabolites. However, isolating every single compound from extract is not always possible due complex chemistry and presence most secondary metabolites at very low levels. Metabolomics has emerged in recent years as an indispensable tool analysis crude extracts, leading paradigm shift research. Analytical methods such mass spectrometry (MS) nuclear magnetic resonance (NMR) used comprehensively annotate constituents plant screening, discovery well quality control purposes those required phytomedicine. In this review, current advancements sample preparation, measurements, data presented alongside few case studies successful applications these processes product discovery.

Language: Английский

Citations

242

Ultraviolet Photodissociation Mass Spectrometry for Analysis of Biological Molecules DOI
Jennifer S. Brodbelt,

Lindsay Morrison,

Inês C. Santos

et al.

Chemical Reviews, Journal Year: 2019, Volume and Issue: 120(7), P. 3328 - 3380

Published: Dec. 18, 2019

The development of new ion-activation/dissociation methods continues to be one the most active areas mass spectrometry owing broad applications tandem in identification and structural characterization molecules. This Review will showcase impact ultraviolet photodissociation (UVPD) as a frontier strategy for generating informative fragmentation patterns ions, especially biological molecules whose complicated structures, subtle modifications, large sizes often impede molecular characterization. UVPD energizes ions via absorption high-energy photons, which allows access dissociation pathways relative more conventional ion-activation methods. Applications analysis peptides, proteins, lipids, other classes biologically relevant are emphasized this Review.

Language: Английский

Citations

233

Immunometabolism in the Brain: How Metabolism Shapes Microglial Function DOI
Louis‐Philippe Bernier, Elisa M. York, Brian A. MacVicar

et al.

Trends in Neurosciences, Journal Year: 2020, Volume and Issue: 43(11), P. 854 - 869

Published: Sept. 18, 2020

Language: Английский

Citations

184

Valorization of by-products from olive oil industry and added-value applications for innovative functional foods DOI

Patricia Gullón,

Beatriz Gullón, Gonzalo Astray

et al.

Food Research International, Journal Year: 2020, Volume and Issue: 137, P. 109683 - 109683

Published: Sept. 18, 2020

Language: Английский

Citations

165

To metabolomics and beyond: a technological portfolio to investigate cancer metabolism DOI Creative Commons
Federica Danzi,

Raffaella Pacchiana,

Andrea Mafficini

et al.

Signal Transduction and Targeted Therapy, Journal Year: 2023, Volume and Issue: 8(1)

Published: March 22, 2023

Abstract Tumour cells have exquisite flexibility in reprogramming their metabolism order to support tumour initiation, progression, metastasis and resistance therapies. These reprogrammed activities include a complete rewiring of the bioenergetic, biosynthetic redox status sustain increased energetic demand cells. Over last decades, cancer field has seen an explosion new biochemical technologies giving more tools than ever before navigate this complexity. Within cell or tissue, metabolites constitute direct signature molecular phenotype thus profiling concrete clinical applications oncology. Metabolomics fluxomics, are key technological approaches that mainly revolutionized enabling researchers both qualitative mechanistic model cancer. Furthermore, upgrade from bulk single-cell analysis provided unprecedented opportunity investigate biology at cellular resolution allowing depth quantitative complex heterogenous diseases. More recently, advent functional genomic screening allowed identification pathways, processes, biomarkers novel therapeutic targets concert with other allow patient stratification treatment regimens. This review is intended be guide for metabolism, highlighting current emerging technologies, emphasizing advantages, disadvantages potential leading development innovative anti-cancer

Language: Английский

Citations

114

Advances in high throughput LC/MS based metabolomics: A review DOI Creative Commons
Robert S. Plumb, Lee A. Gethings,

Paul Rainville

et al.

TrAC Trends in Analytical Chemistry, Journal Year: 2023, Volume and Issue: 160, P. 116954 - 116954

Published: Jan. 27, 2023

Properly implemented, metabolic and lipidomic profiling can provide a deeper understanding of mammalian, plant bacterial biology. These omics-tools have developed matured over the last 40-years are now being deployed to valuable information in epidemiological studies, drug toxicology pharmacology, disease biology progression patient stratification. LC/MS has become technology choice for both lipid profiling, due its speed, sensitivity structural elucidation capabilities. In preceding two decades there been many technological methodological advances that facilitated evolution into rugged, reliable, easily tool. include, but not limited to, improvements chromatography (phases, columns, delivery system), instruments mass spectrometry, optimization sample preparation, introduction ion mobility, data analysis tools, metabolite databases, harmonized protocols, more widespread use quality control methods reference standards/matrices. Here, recent developments high throughput liquid chromatography/high resolution spectrometry phenotyping described. which may improved feature detection, increased laboratory efficiency quality, as well "biomarker" identification, discussed relation their potential application large clinical or biobank collections.

Language: Английский

Citations

49

Metabolomics and chemometrics: The next-generation analytical toolkit for the evaluation of food quality and authenticity DOI Creative Commons
Pascual García-Pérez, Pier Paolo Becchi, Leilei Zhang

et al.

Trends in Food Science & Technology, Journal Year: 2024, Volume and Issue: 147, P. 104481 - 104481

Published: April 7, 2024

The advances in NMR and mass spectrometry metabolomics allows a comprehensive profiling of foods, potentially covering geographical origin, authenticity, quality integrity issues. However, mining specific effects within the corresponding datasets is challenging due to presence set interacting factors that finally determine signatures. This review provides an overview different approaches used food then focusing on chemometric for data interpretation. In particular, interpretation hierarchically presented, starting from unsupervised (PCA, hierarchical clusters) supervised multivariate statistics like OPLS AMOPLS multiblock ANOVA discriminant approaches. Finally, machine learning Artificial Neural Networks are discussed as novel emerging tool support Tailored advisable, rather than unique solutions, with naively provide qualitative recognition patterns, modelling markers identification. Nonetheless, approach able interpretate complex

Language: Английский

Citations

27