Structural Elucidation of a Metagenomic Urethanase and Its Engineering Towards Enhanced Hydrolysis Profiles DOI Creative Commons
Thomas Bayer, Gottfried J. Palm, Leona Berndt

et al.

Angewandte Chemie International Edition, Journal Year: 2024, Volume and Issue: 63(38)

Published: July 1, 2024

While plastics like polyethylene terephthalate can already be degraded efficiently by the activity of hydrolases, other synthetic polymers polyurethanes (PUs) and polyamides (PAs) largely resist biodegradation. In this study, we solved first crystal structure metagenomic urethanase UMG-SP-1, identified highly flexible loop regions to comprise active site residues, targeted a total 20 potential hot spots site-saturation mutagenesis. Engineering campaigns yielded variants with single mutations, exhibiting almost 3- 8-fold improved against stable N-aryl urethane amide bonds, respectively. Furthermore, demonstrated release corresponding monomers from thermoplastic polyester-PU PA (nylon 6) single, metagenome-derived after short incubation times. Thereby, expanded hydrolysis profile UMG-SP-1 beyond reported low-molecular weight carbamates. Together, these findings promise advanced strategies for bio-based degradation recycling plastic materials waste, aiding efforts establish circular economy polymers.

Language: Английский

Chemoenzymatic Cascades Combining Biocatalysis and Transition Metal Catalysis for Asymmetric Synthesis DOI Creative Commons
Sergio González‐Granda, Lorena Escot, Iván Lavandera

et al.

Angewandte Chemie International Edition, Journal Year: 2023, Volume and Issue: 62(18)

Published: Feb. 6, 2023

Abstract The combination of catalytic methods provides multiple advantages in organic synthesis, allowing access to diverse molecules a straightforward manner. Merging metal and enzyme catalysis is currently receiving great attention due the possibility assemble C−C coupling, olefin metathesis, hydration other reactions with exquisite stereospecificity displayed by enzymes. Thus, this minireview organized based on action species (Pd, Ru, Au, Ir, Fe…) different Special will be paid design sequential processes concurrent cascades, presenting solutions such as use surfactants or compartmentalization strategies for those cases where incompatibilities could hamper overall process.

Language: Английский

Citations

38

Controlling Radical Polymerization with Biocatalysts DOI
Ruoyu Li, Weina Kong, Zesheng An

et al.

Macromolecules, Journal Year: 2023, Volume and Issue: 56(3), P. 751 - 761

Published: Feb. 3, 2023

Reversible deactivation radical polymerization (RDRP) is a set of powerful and versatile methods for the synthesis well-defined polymers. Over past two decades, engagement biocatalysts, namely, enzymes bacteria, has granted distinctive features to RDRP propelled toward more sustainable future. In this Perspective, we highlight green conditions, oxygen tolerance, function, ability access difficult polymers in conducted by biocatalysis (bio-RDRP), discuss major considerations when conducting bio-RDRP, point out drawbacks bottlenecks that limit its further development. The future bio-RDRP may benefit from expanding biocatalyst library, improving redox potential enhancing robustness, in-depth mechanistic studies.

Language: Английский

Citations

29

Application of Immobilized Enzymes in Flow Biocatalysis for Efficient Synthesis DOI
Zhongyao Tang, Yuri Oku, Tomoko Matsuda

et al.

Organic Process Research & Development, Journal Year: 2024, Volume and Issue: 28(5), P. 1308 - 1326

Published: March 8, 2024

Flow chemistry as well biocatalysis contribute to achieve green industries and sustainable development. Now there is an approach that combines them, called flow biocatalysis, which attracts more attention. In enzyme immobilization plays a powerful role in promoting its This review begins with general introduction of then provides update on the application immobilized enzymes biocatalysis. Oxidation–reduction, hydrolysis–esterification, transferase reaction, condensation, carboxylation, multistep cascade reactions continuous-flow process are discussed detail.

Language: Английский

Citations

15

Practical Machine Learning-Assisted Design Protocol for Protein Engineering: Transaminase Engineering for the Conversion of Bulky Substrates DOI
Marian J. Menke, Yu‐Fei Ao, Uwe T. Bornscheuer

et al.

ACS Catalysis, Journal Year: 2024, Volume and Issue: 14(9), P. 6462 - 6469

Published: April 12, 2024

Protein engineering is essential for improving the catalytic performance of enzymes applications in biocatalysis, which machine learning provides an emerging approach variant design. Transaminases are powerful biocatalysts stereoselective synthesis chiral amines but one major challenge their limited substrate scope. We present a general and practical design protocol protein to combine advantages three strategies, including directed evolution, rational design, learning, demonstrate application transaminases with higher activity toward bulky substrates. A high-quality data set was obtained by selected key positions, then applied create model transaminase activity. This data-assisted optimized variants, showed improved (up 3-fold over parent) substrates, maintaining enantioselectivity starting enzyme scaffold as well enantiomeric excess >99%ee).

Language: Английский

Citations

13

Structural Elucidation of a Metagenomic Urethanase and Its Engineering Towards Enhanced Hydrolysis Profiles DOI Creative Commons
Thomas Bayer, Gottfried J. Palm, Leona Berndt

et al.

Angewandte Chemie International Edition, Journal Year: 2024, Volume and Issue: 63(38)

Published: July 1, 2024

While plastics like polyethylene terephthalate can already be degraded efficiently by the activity of hydrolases, other synthetic polymers polyurethanes (PUs) and polyamides (PAs) largely resist biodegradation. In this study, we solved first crystal structure metagenomic urethanase UMG-SP-1, identified highly flexible loop regions to comprise active site residues, targeted a total 20 potential hot spots site-saturation mutagenesis. Engineering campaigns yielded variants with single mutations, exhibiting almost 3- 8-fold improved against stable N-aryl urethane amide bonds, respectively. Furthermore, demonstrated release corresponding monomers from thermoplastic polyester-PU PA (nylon 6) single, metagenome-derived after short incubation times. Thereby, expanded hydrolysis profile UMG-SP-1 beyond reported low-molecular weight carbamates. Together, these findings promise advanced strategies for bio-based degradation recycling plastic materials waste, aiding efforts establish circular economy polymers.

Language: Английский

Citations

13