Annual Review of Genetics,
Journal Year:
2023,
Volume and Issue:
57(1), P. 87 - 115
Published: June 29, 2023
Coral
reefs
are
both
exceptionally
biodiverse
and
threatened
by
climate
change
other
human
activities.
Here,
we
review
population
genomic
processes
in
coral
reef
taxa
their
importance
for
understanding
responses
to
global
change.
Many
on
characterized
weak
genetic
drift,
extensive
gene
flow,
strong
selection
from
complex
biotic
abiotic
environments,
which
together
present
a
fascinating
test
of
microevolutionary
theory.
Selection,
hybridization
have
played
will
continue
play
an
important
role
the
adaptation
or
extinction
face
rapid
environmental
change,
but
research
remains
limited
compared
urgent
needs.
Critical
areas
future
investigation
include
evolutionary
potential
mechanisms
local
adaptation,
developing
historical
baselines,
building
greater
capacity
countries
where
most
diversity
is
concentrated.
Scientific Reports,
Journal Year:
2020,
Volume and Issue:
10(1)
Published: June 30, 2020
Ecosystem
connectivity
is
an
essential
consideration
for
marine
spatial
planning
of
competing
interests
in
the
deep
sea.
Immobile,
adult
communities
are
connected
through
freely
floating
larvae,
depending
on
new
recruits
their
health
and
to
adapt
external
pressures.
We
hypothesize
that
vertical
swimming
ability
deep-sea
before
they
permanently
settle
at
bottom,
one
way
larvae
can
control
dispersal.
test
this
hypothesis
with
more
than
[Formula:
see
text]
simulated
particles
a
range
active
behaviours
embedded
within
currents
high-resolution
ocean
model.
Despite
much
stronger
horizontal
currents,
have
order
magnitude
impact
These
strong
relationships
between
larval
dispersal,
pathways,
demonstrate
lack
data
behaviour
traits
serious
impediment
modelling
ecosystem
connectivity;
uncertainty
greatly
limits
our
develop
ecologically
coherent
protected
area
networks.
Frontiers in Marine Science,
Journal Year:
2021,
Volume and Issue:
8
Published: June 1, 2021
Marine
protected
areas
(MPAs)
are
globally
important
environmental
management
tools
that
provide
protection
from
the
effects
of
human
exploitation
and
activities,
supporting
conservation
marine
biological
diversity,
habitats,
ecosystems
processes
they
host,
as
well
resources
in
a
broad
sense.
Consequently,
also
expected
to
manage
enhance
ecosystem
services
material,
non-material,
consumptive
non-consumptive
goods,
benefits
for
humans.
There
is
however
certain
confusion
on
what
constitutes
an
service,
it
not
always
easy
distinguish
between
them
societal
benefits.
The
main
nuance
service
aptitude
has
or
develops
naturally
consequence
action,
manifests
through
its
own
properties
(productivity,
stability,
quality
key
parameters,
etc.),
while
benefit
economic
other
profitability
(emotional,
educational,
scientific,
etc.)
humans
obtain
said
quality.
In
this
work,
268
publications,
together
with
our
experiences
different
investigations
carried
out
MPAs
part
BiodivERsA3-2015-21
RESERVEBENEFIT
European
project,
have
been
selected,
reviewed
discussed
analyze
knowledge
status
derived
them,
sometimes
providing
information
their
evidence,
when
exist.
We
define
classify
protection,
elaborate
conceptual
model
cause-effect
relationships
them.
Proceedings of the National Academy of Sciences,
Journal Year:
2021,
Volume and Issue:
118(34)
Published: Aug. 16, 2021
Significance
We
find
that
a
ubiquitous
assumption
in
fisheries
models
for
predicting
population
replenishment
introduces
systematic
overestimates
of
fished
populations.
For
32
the
world’s
major
fisheries,
these
biases
result
harvest
thresholds
being
set
too
high:
most
cases,
reference
points
based
on
spawning
potential
ratios
are
more
than
2.5
times
higher
those
necessary
to
achieve
desired
level
replenishment.
When
we
use
biologically
appropriate
reproductive
hyperallometry,
management
tools
such
as
spatiotemporal
closures
and
slots
can
outperform
traditional
approaches
terms
yield.
Failing
consider
hyperallometry
efficacy
underestimates
benefits
create
reservoirs
larger
individuals.
Global Change Biology,
Journal Year:
2021,
Volume and Issue:
27(15), P. 3432 - 3447
Published: May 20, 2021
Abstract
Marine
reserves
are
a
key
tool
for
the
conservation
of
marine
biodiversity,
yet
only
~2.5%
world's
oceans
protected.
The
integration
into
connected
networks
representing
all
habitats
has
been
encouraged
by
international
agreements,
benefits
this
design
not
tested
empirically.
Australia
one
largest
systems
reserves,
providing
rare
opportunity
to
assess
how
connectivity
influences
success.
An
Australia‐wide
dataset
was
collected
using
baited
remote
underwater
video
deployed
across
depth
range
from
0
100
m
effectiveness
protecting
teleosts
subject
commercial
and
recreational
fishing.
A
meta‐analytical
comparison
73
fished
species
within
91
found
that,
on
average,
had
28%
greater
abundance
53%
biomass
compared
adjacent
areas
open
However,
protection
were
observed
(heterogeneity),
so
full
subsets
generalized
additive
modelling
used
consider
factors
that
influence
reserve
effectiveness,
including
distance‐based
ecological
metrics
among
reserves.
Our
results
suggest
increased
improve
aforementioned
these
should
be
considered
optimize
such
over
time.
We
provide
important
guidance
when
implementing
purpose
increasing
size
species,
given
expected
increase
in
coverage
globally.
show
highly
protected
(no‐take)
designed
connectivity,
can
an
effective
strategy
temperate
tropical
waters
overarching
biodiversity
framework.
Journal of Animal Ecology,
Journal Year:
2021,
Volume and Issue:
90(6), P. 1419 - 1432
Published: Jan. 29, 2021
Abstract
As
species
struggle
to
cope
with
rising
ocean
temperatures,
temperate
marine
assemblages
are
facing
major
reorganization.
Many
benthic
have
a
brief
but
critical
period
dispersing
through
the
plankton,
when
they
particularly
susceptible
variations
in
temperature.
Impacts
of
temperatures
can
thus
ripple
population
community‐wide
consequences.
However,
responses
highly
species‐specific,
making
it
difficult
discern
assemblage‐wide
patterns
life
histories
different
fish
species.
Here,
we
evaluate
temperature
early
several
using
otolith
reconstructive
techniques.
We
also
assess
consequences
future
warming
scenarios
this
assemblage.
sampled
recent
settlers
nine
common
across
gradient
Mediterranean
Sea
and
obtained
environmental
data
for
each
individual.
Using
microstructure,
measured
traits
including
pelagic
larval
duration
(PLD),
growth
rate,
settlement
size,
hatching
dates.
used
GLM
framework
examine
how
variables
influenced
life‐history
parameters.
show
that
increasing
results
considerable
reduction
dispersal
potential
fish.
find
nearly
universal,
decline
(PLD)
between
10%
25%.
This
was
because,
temperature,
larvae
grew
quicker
their
size.
Settlement
size
itself
less
affected
by
appears
be
an
ontogenetically
fixed
process.
Given
current
estimates
warming,
there
could
up
50
km
Mediterranean,
reducing
connectivity
potentially
isolating
populations
as
waters
warm.
Methods in Ecology and Evolution,
Journal Year:
2017,
Volume and Issue:
9(3), P. 490 - 501
Published: Oct. 27, 2017
Abstract
Dispersal
kernels
are
the
standard
method
in
biology
for
describing
and
predicting
relationship
between
dispersal
distance.
Statistically
fitted
allow
observations
of
a
limited
number
events
to
be
extrapolated
across
wider
landscape,
form
basis
wide
range
theories
methods
ecology,
evolution
conservation.
Genetic
parentage
data
an
increasingly
common
source
information,
particularly
species
where
is
difficult
observe
directly.
In
particular,
analysis
now
routinely
applied
coral
reef
fish,
whose
larvae
can
potentially
disperse
over
many
kilometres,
too
small
track
situ.
It
not
straightforward
estimate
from
data,
existing
all
have
substantial
limitations.
These
include
omission
important
population
processes
such
as
density‐dependent
mortality,
on
unassigned
juveniles.
Here
we
develop
proof
new
likelihood
estimator
fitting
applying
it
simulated
datasets
fish
Great
Barrier
Reef
(
GBR
).
The
incorporates
series
factors
previously
considered
other
methods:
partial
sampling
adults
juveniles
sampled
sites;
existence
dispersers
unsampled
habitat
patches;
post‐settlement
(e.g.
mortality)
that
follow
but
precede
sampling.
Including
these
additional
requires
adult
populations
patches,
result
superior
mean
distances.
Our
power
analyses
suggest
currently
available
fishes
large
enough
fit
accurate
kernels.
Based
one
particular
region
,
should
distributed
equally
juveniles,
sample
more
than
3%
population.
However,
while
resulting
offer
reasonable
estimates
dispersal,
they
fail
capture
variation
realistic
patterns.
Molecular Ecology Resources,
Journal Year:
2018,
Volume and Issue:
18(6), P. 1263 - 1281
Published: June 5, 2018
Abstract
The
development
of
high‐throughput
sequencing
technologies
is
dramatically
increasing
the
use
single
nucleotide
polymorphisms
(
SNP
s)
across
field
genetics,
but
most
parentage
studies
wild
populations
still
rely
on
microsatellites.
We
developed
a
bioinformatic
pipeline
for
identifying
panels
that
are
informative
analysis
from
restriction
site‐associated
DNA
RAD
seq)
data.
This
includes
options
with
or
without
reference
genome,
and
provides
methods
to
maximize
genotyping
accuracy
select
sets
unlinked
loci
have
high
statistical
power.
test
this
small
Mexican
gray
wolf
bighorn
sheep,
which
analyses
expected
be
challenging
due
low
genetic
diversity
presence
many
closely
related
individuals.
compare
results
generated
between
s
For
wolf,
we
conducted
30
pups
cohort
where
samples
were
available
64%
possible
mothers
53%
fathers,
assignments
could
estimated
because
true
identities
parents
known
priori
based
maternity
39
lambs
five
cohorts
77%
sampled,
unknown.
Analyses
genome
produced
≥95%
assignment
outperforming
microsatellites
at
78%
accuracy.
Maternity
completely
consistent
all
74.4%
Accuracy
consistency
not
reduced
when
using
as
few
284
142
indicating
our
can
used
develop
assays
relatively
numbers
loci.
Scientific Reports,
Journal Year:
2016,
Volume and Issue:
6(1)
Published: March 31, 2016
Seascape
connectivity
critically
affects
the
spatiotemporal
dynamics
of
marine
metacommunities.
Understanding
how
patterns
emerge
from
physically
and
biologically-mediated
interactions
is
therefore
crucial
to
conserve
ecosystem
functions
biodiversity.
Here,
we
develop
a
set
biophysical
models
explore
in
assemblages
species
belonging
typical
Mediterranean
community
(Posidonia
oceanica
meadows)
characterized
by
different
dispersing
traits.
We
propose
novel
methodological
framework
synthesize
species-specific
results
into
metrics
show
that
variation
magnitude
direction
connections,
as
well
interspecific
differences
traits,
are
key
factors
structuring
connectivity.
eventually
demonstrate
these
can
be
used
characterize
functional
role
each
area
determining
at
basin
level
support
conservation
planning.