The MIT Press eBooks,
Journal Year:
2023,
Volume and Issue:
unknown
Published: June 29, 2023
The
unexpected
diversity,
beauty,
and
strangeness
of
life
in
ancient
lakes—some
millions
years
old—and
the
remarkable
insights
lakes
are
yielding
about
causes
biodiversity.
Most
less
than
10,000
old
short-lived,
but
there
is
a
much
smaller
number
lakes,
tectonic
origin
often
old,
that
scattered
across
every
continent
Antarctica:
Baikal,
Tanganyika,
Victoria,
Titicaca,
Biwa,
to
name
few.
Often
these
filled
with
diversity
fish,
crustaceans,
snails,
other
creatures
found
nowhere
else
world.
In
Our
Ancient
Lakes,
Jeffrey
McKinnon
introduces
living
aquatic
bodies
general
reader
explains
surprising,
controversial,
findings
study
their
faunas
formation
persistence
species.
first
single-authored
volume
synthesize
studies
Lakes
provides
an
overview
distinctive
geological
origins;
accounts
evolutionary
processes
have
generated
incredible
produced
some
fastest
speciation
rates
known
for
vertebrates;
surprisingly
important
role
interspecies
mating
most
rapid
diversifications;
uniquely
complete
records
inhabited
which
being
extracted
from
deep
lake
sediments;
prospects
as
we
tumble
into
Anthropocene;
more.
Shining
light
on
class
biodiversity
hot
spot
equivalent
coral
reefs
ocean
or
tropical
rainforests
land,
chronicles
refreshingly
personal
accessible
way
singular
wonders
venerable
water
bodies.
MIT
Press
gratefully
acknowledges
Furthermore:
program
J.M.
Kaplan
Fund.
Cells,
Journal Year:
2022,
Volume and Issue:
11(11), P. 1764 - 1764
Published: May 27, 2022
Fishes
provide
a
unique
and
intriguing
model
system
for
studying
the
genomic
origin
evolutionary
mechanisms
underlying
sex
determination
high
sex-chromosome
turnover.
In
this
study,
mode
of
was
investigated
in
Siamese
fighting
fish,
species
commercial
importance.
Genome-wide
SNP
analyses
were
performed
on
75
individuals
(40
males
35
females)
across
populations
to
determine
candidate
sex-specific/sex-linked
loci.
total,
73
male-specific
loci
identified
mapped
5.6
kb
region
chromosome
9,
suggesting
putative
male-determining
(pMDR)
containing
localized
dmrt1
znrf3
functional
developmental
genes.
Repeat
annotations
pMDR
revealed
an
abundance
transposable
elements,
particularly
Ty3/Gypsy
novel
repeats.
Remarkably,
two
out
located
chromosomes
7
19,
implying
existence
polygenic
determination.
Besides
loci,
five
female-specific
9
also
observed
certain
populations,
indicating
possibility
female-determining
nature
An
alternative
explanation
is
that
derived
from
other
or
fish
recently
emerged
as
new
sex-determining
during
domestication
repeated
hybridization.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: Jan. 27, 2023
Abstract
‘Sex’
is
often
used
to
describe
a
suite
of
phenotypic
and
genotypic
traits
an
organism
related
reproduction.
However,
these
–
gamete
type,
chromosomal
inheritance,
physiology,
morphology,
behavior,
etc.
are
not
necessarily
coupled,
the
rhetorical
collapse
variation
into
single
term
elides
much
complexity
inherent
in
sexual
phenotypes.
We
argue
that
consideration
‘sex’
as
constructed
category
operating
at
multiple
biological
levels
opens
up
new
avenues
for
inquiry
our
study
variation.
apply
this
framework
three
case
studies
illustrate
diversity
sex
variation,
from
decoupling
phenotypes
evolutionary
ecological
consequences
intrasexual
polymorphisms.
instead
assuming
binary
systems,
some
may
be
better
categorized
multivariate
nonbinary.
Finally,
we
conduct
meta-analysis
terms
scientific
literature
highlight
how
model
can
clarify,
rather
than
cloud,
within
across
species.
such
expanded
equips
us
understand
processes,
biologists
it
incumbent
upon
push
back
against
misunderstandings
biology
enact
harm
on
marginalized
communities.
Scientific Reports,
Journal Year:
2022,
Volume and Issue:
12(1)
Published: Oct. 26, 2022
Abstract
Sex
determining
loci
have
been
described
on
at
least
12
of
22
chromosomes
in
East
African
cichlid
fishes,
indicating
a
high
rate
sex
chromosome
turnover.
To
better
understand
the
rates
and
patterns
replacement,
we
used
new
methods
to
characterize
tribe
Cyprichromini
from
Lake
Tanganyika.
Our
k-mer
based
successfully
identified
sex-linked
polymorphisms
without
need
for
reference
genome.
We
confirm
three
previously
reported
this
group.
determined
polarity
turnover
LG05
Cyprichromis
as
ZW
XY.
locus
LG04
Paracyprichromis
brieni.
The
LG15
XY
nigripinnis
was
not
found
other
species,
sample
sp.
“tembwe
”
is
likely
be
hybrid
origin.
Although
highly
divergent
are
thought
develop
stepwise
manner,
show
two
cases
(LG05-ZW
LG05-XY)
which
region
differentiation
encompasses
most
chromosome,
but
appears
arisen
single
step.
This
study
expands
our
understanding
evolution
Cyprichromini,
indicates
an
even
higher
level
than
thought.
Evolution & Development,
Journal Year:
2024,
Volume and Issue:
26(3)
Published: March 30, 2024
Abstract
Vertebrate
pigmentation
patterns
are
highly
diverse,
yet
we
have
a
limited
understanding
of
how
evolutionary
changes
to
genetic,
cellular,
and
developmental
mechanisms
generate
variation.
To
address
this,
examine
the
formation
sexually‐selected
male
ornament
exhibiting
inter‐
intraspecific
variation,
egg‐spot
pattern,
consisting
circular
yellow‐orange
markings
on
anal
fins
haplochromine
cichlid
fishes.
We
focus
Astatotilapia
calliptera
,
ancestor‐type
species
Malawi
adaptive
radiation
over
850
species.
identify
key
role
for
iridophores
in
initializing
aggregations
composed
iridophore‐xanthophore
associations.
Despite
adult
sexual
dimorphism,
initially
form
both
males
females,
with
development
only
diverging
between
sexes
at
later
stages.
Unexpectedly,
found
that
timing
initialization
is
plastic.
The
earlier
individuals
socially
isolated,
form,
being
cell
type
responds
social
environment.
Furthermore,
observe
apparent
competitive
interactions
adjacent
aggregations,
which
strongly
suggests
patterning
results
mostly
from
cell‐autonomous
cellular
interactions.
Together,
these
demonstrate
A.
an
exciting
model
investigating
pigment
pattern
level
system
plasticity,
As
represents
ancestral
bauplan
egg‐spots,
findings
provide
baseline
informed
comparisons
across
incredibly
diverse
radiation.
Journal of Fish Biology,
Journal Year:
2024,
Volume and Issue:
unknown
Published: Nov. 25, 2024
Temperature
is
a
leading
environmental
factor
determining
the
sex
ratio
of
some
animal
populations,
such
as
fish,
amphibians,
and
reptiles.
However,
underlying
mechanism
by
which
temperature
affects
gender
still
poorly
understood.
Transient
receptor
potential
a1b
(Trpa1b)
belongs
to
ion
channel
family
transient
potentials
exhibits
dual
thermosensitivity
heat
cold.
In
this
study,
we
have
unveiled
novel
function
trpa1b
gene.
Zebrafish
generated
through
clustered
regularly
interspaced
short
palindromic
repeats
(CRISPR)/Cas9
with
Trpa1b-null
manifest
male-biased
ratio.
The
quantity
primordial
germ
cells
(PGCs)
in
zebrafish
closely
linked
determination
gonadal
development.
Yet
role
gene
reproductive
development
remains
unexplored
literature.
Our
investigation
revealed
significant
reduction
PGCs
Trpa1b
mutant
compared
their
wild-type
counterparts
24-h
postfertilization
(hpf).
Transcriptome
sequencing
tissues
near
crest
embryos
at
1.25
days
(dpf)
differential
changes
PGC-related
marker
genes
related
sperm
cell
differentiation.
relative
expression
ddx4
sycp3
was
significantly
downregulated,
whereas
amh
upregulated
20
dpf
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Dec. 11, 2024
Abstract
Variation
in
gastrointestinal
morphology
is
associated
with
dietary
specialization
across
the
animal
kingdom.
Gut
length
generally
correlates
trophic
level,
and
increased
gut
herbivores
a
classic
example
of
adaptation
to
cope
diets
lower
nutrient
content
higher
proportion
refractory
material.
However,
genetic
basis
variation
remains
largely
unstudied,
partly
due
inaccessibility
plasticity
tissue,
as
well
lack
diversity
within
traditional
model
organisms
relative
that
observed
among
species
belonging
different
levels.
Here,
we
confirm
recently
evolved
Lake
Malawi
cichlid
fish
adaptations.
We
then
produce
interspecific,
inter-trophic-level
hybrids
map
differences
intestinal
an
F2
mapping
cross
between
Metriaclima
mbenjii
,
omnivore
relatively
long
gut,
Aulonocara
koningsi
carnivore
short
gut.
identify
numerous
candidate
quantitative
trait
loci
for
length.
These
are
predominantly
sex-specific,
supporting
evolutionary
history
sexual
conflicts
also
epistatic
interactions
potentially
canalization
maintenance
cryptic
adaptive
radiation.
Overall,
our
results
suggest
complex,
polygenic
evolution
level
cichlids,
may
be
involved
processes
underlying
other
traits
cichlids.
Summary
This
study
examines
which
exhibit
It
highlights
how
cichlids
recapitulate
broad
taxonomic
trend:
omnivores
having
longer
intestines
than
carnivores.
By
creating
(omnivore)
(carnivore),
several
differences.
associations
suggesting
historical
conflicts.
The
indicate
these
fish,
shaping
species.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: April 6, 2023
ABSTRACT
Vertebrate
pigmentation
patterns
are
highly
diverse,
yet
we
have
a
limited
understanding
of
how
evolutionary
changes
to
genetic,
cellular,
and
developmental
mechanisms
generate
variation.
To
address
this,
examine
the
formation
sexually-selected
male
ornament
exhibiting
inter-
intra-specific
variation,
egg-spot
pattern,
consisting
circular
yellow-orange
markings
on
anal
fins
haplochromine
cichlid
fishes.
We
focus
Astatotilapia
calliptera
,
ancestor-type
species
Malawi
adaptive
radiation
over
850
species.
identify
key
role
for
iridophores
in
initialising
aggregations
composed
iridophore-xanthophore
associations.
Despite
adult
sexual
dimorphism,
initially
form
both
males
females,
with
development
only
diverging
between
sexes
at
later
stages.
Unexpectedly,
found
that
timing
initialisation
is
plastic.
The
earlier
individuals
establish
their
own
territory
form,
being
cell
type
responds
social
conditions.
Furthermore,
observe
apparent
competitive
interactions
adjacent
aggregations,
which
strongly
suggests
patterning
results
mostly
from
cell-autonomous
cellular
interactions.
Together,
these
demonstrate
A.
an
exciting
model
investigating
pigment
pattern
level
system
plasticity,
As
represents
ancestral
bauplan
egg-spots,
findings
provide
baseline
informed
comparisons
across
incredibly
diverse
radiation.
The MIT Press eBooks,
Journal Year:
2023,
Volume and Issue:
unknown
Published: June 29, 2023
The
unexpected
diversity,
beauty,
and
strangeness
of
life
in
ancient
lakes—some
millions
years
old—and
the
remarkable
insights
lakes
are
yielding
about
causes
biodiversity.
Most
less
than
10,000
old
short-lived,
but
there
is
a
much
smaller
number
lakes,
tectonic
origin
often
old,
that
scattered
across
every
continent
Antarctica:
Baikal,
Tanganyika,
Victoria,
Titicaca,
Biwa,
to
name
few.
Often
these
filled
with
diversity
fish,
crustaceans,
snails,
other
creatures
found
nowhere
else
world.
In
Our
Ancient
Lakes,
Jeffrey
McKinnon
introduces
living
aquatic
bodies
general
reader
explains
surprising,
controversial,
findings
study
their
faunas
formation
persistence
species.
first
single-authored
volume
synthesize
studies
Lakes
provides
an
overview
distinctive
geological
origins;
accounts
evolutionary
processes
have
generated
incredible
produced
some
fastest
speciation
rates
known
for
vertebrates;
surprisingly
important
role
interspecies
mating
most
rapid
diversifications;
uniquely
complete
records
inhabited
which
being
extracted
from
deep
lake
sediments;
prospects
as
we
tumble
into
Anthropocene;
more.
Shining
light
on
class
biodiversity
hot
spot
equivalent
coral
reefs
ocean
or
tropical
rainforests
land,
chronicles
refreshingly
personal
accessible
way
singular
wonders
venerable
water
bodies.
MIT
Press
gratefully
acknowledges
Furthermore:
program
J.M.
Kaplan
Fund.