Genome-wide SNP analysis provides insights into the XX/XY sex-determination system in silver barb (Barbonymus gonionotus) DOI Open Access
Visarut Chailertrit, Thitipong Panthum,

Lalida Kongkaew

et al.

Genomics & Informatics, Journal Year: 2023, Volume and Issue: 21(4), P. e47 - e47

Published: Dec. 29, 2023

Silver barb (Barbonymus gonionotus) is among the most economically important freshwater fish species in Thailand. It ranks fourth economic value and third production weight for fisheries culture An XX/XY sex-determination system based on gynogenesis was previously reported this fish. In study, molecular basis underlying further investigated. Genome-wide single-nucleotide polymorphism data were generated 32 captive-bred silver individuals, scored by phenotypic sex, to identify sex-linked regions associated with sex determination. Sixty-three male-linked loci, indicating putative XY chromosomes, identified. Male-specific loci not observed, which indicates that Y chromosome young determination region cryptic. A homology search revealed homologous Mariner/Tc1 Gypsy transposable elements are probably remnants of an initial accumulation repeats from early stages differentiation. This research provides convincing insights into mechanism reveals potential barb. The study basic necessary increasing commercial barbs through genetic improvements.

Language: Английский

Polygenic sex determination in vertebrates – is there any such thing? DOI Creative Commons
Manfred Schartl, Arthur Georges, Jennifer A. Marshall Graves

et al.

Trends in Genetics, Journal Year: 2023, Volume and Issue: 39(4), P. 242 - 250

Published: Jan. 18, 2023

Language: Английский

Citations

17

Master-Key Regulators of Sex Determination in Fish and Other Vertebrates—A Review DOI Open Access
Arie Yehuda Curzon, Andrey Shirak,

Micha Ron

et al.

International Journal of Molecular Sciences, Journal Year: 2023, Volume and Issue: 24(3), P. 2468 - 2468

Published: Jan. 27, 2023

In vertebrates, mainly single genes with an allele ratio of 1:1 trigger sex-determination (SD), leading to initial equal sex-ratios. Such are designated master-key regulators (MKRs) and frequently associated DNA structural variations, such as copy-number variation null-alleles. Most MKR knowledge comes from fish, especially cichlids, which serve a genetic model for SD. We list 14 MKRs, dmrt1 has been identified in taxonomically distant species birds fish. The identification MKRs known involvement SD, amh fshr, indicates that common network drives illustrate affects estrogen/androgen equilibrium, suggesting may exert over-expression the gene thus form MKR. However, reason why certain factors constitute whereas others do not is unclear. limited number conserved suggests their heterologous sequences could be used targets future searches additional species. Sex-specific mortality, sex reversal, role temperature multigenic SD examined, claiming these phenomena often consequences artificial hybridization. discuss essentiality taxonomic authentication validate purebred origin before searches.

Language: Английский

Citations

16

Characterization of Microsatellite Distribution in Siamese Fighting Fish Genome to Promote Conservation and Genetic Diversity DOI Creative Commons
Pish Wattanadilokchatkun, Thitipong Panthum,

Kitipong Jaisamut

et al.

Fishes, Journal Year: 2022, Volume and Issue: 7(5), P. 251 - 251

Published: Sept. 22, 2022

The Siamese fighting fish (Betta splendens) is a well-known ornamental and emerging model species for studying animal morphology, physiology, behavior. A key concern of betta inbreeding the decline in genetic diversity resulting from commercial breeding programs. Therefore, it essential to develop markers understanding bases domestication phenotypic diversification this species. We utilized previously assembled genome identify characterize microsatellites compare their genomic organization across different annotated 812,134 microsatellite loci spanning 30.70 Mb, accounting 6.57% genome. performed silico polymorphism screening related present these sequences as candidate cross-species amplification. In addition, we successfully validated two using PCR-based assays species, which can promote further characterization diverse lineages. set polymorphic identified study may facilitate assessment population structure marker-assisted selection, among other applications.

Language: Английский

Citations

7

Sexual antagonism and sex determination in three syngnathid species alongside a male pregnancy gradient DOI Creative Commons
Arseny Dubin, Jamie Parker, Astrid Böhne

et al.

bioRxiv (Cold Spring Harbor Laboratory), Journal Year: 2023, Volume and Issue: unknown

Published: Sept. 1, 2023

Abstract The allocation of energy towards gamete production, parental care, mate choice, sex roles, and sexual dimorphism generates divergence in selection pressures between the sexes, leading to opposing fitness strategies antagonism (SA). Due shared genetic makeup, a single genomic locus can contain gene or allele with differing impacts on each sex. This intralocus conflict be resolved via intersex bias expression and/or formation sex-linked regions, that may also regulate determination. Sex determination (SD) encompasses environmental SD (ESD), monogenic SD, polygenic SD. Occasionally, shifts from one another occur. While precise mechanisms driving these are unknown, SA is believed major contributor. To investigate link we selected three syngnathid species along gradient male pregnancy evolved different roles intensities dimorphism. By looking at (Fst) sex-biased patterns, uncovered role competition, rather than pregnancy, primarily drive SA. Furthermore, identified processes related non-coding RNAs biased as mediators Most notably, discovered intraspecies chromosome polymorphism Hippocampus erectus . Overall, report important details interplay suggest understanding its resolution crucial for unraveling evolution diverse species.

Language: Английский

Citations

2

Quality control of fighting fish nucleotide sequences in public repositories reveals a dark matter of systematic taxonomic implication DOI
Thitipong Panthum,

Nattakan Ariyaphong,

Pish Wattanadilokchatkun

et al.

Genes & Genomics, Journal Year: 2022, Volume and Issue: 45(2), P. 169 - 181

Published: Dec. 13, 2022

Language: Английский

Citations

3

MicrosatNavigator: exploring nonrandom distribution and lineage-specificity of microsatellite repeat motifs on vertebrate sex chromosomes across 186 whole genomes DOI
Ryan Rasoarahona, Pish Wattanadilokchatkun, Thitipong Panthum

et al.

Chromosome Research, Journal Year: 2023, Volume and Issue: 31(4)

Published: Sept. 30, 2023

Language: Английский

Citations

1

In Silico Chromosome Mapping of the Male-Specific/Linked Loci in the Jade Perch (Scortum barcoo) Suggests Chromosome 19 as the Putative Y Sex Chromosome DOI Creative Commons
Thitipong Panthum, Pish Wattanadilokchatkun,

Kitipong Jaisamut

et al.

Fishes, Journal Year: 2023, Volume and Issue: 8(10), P. 482 - 482

Published: Sept. 27, 2023

Jade perch (Scortum barcoo) has an XX/XY sex-determination system (SDS); however, its sex chromosomes and sex-determining region remain unknown. The recent availability of the jade chromosome-level genomic data provides a valuable resource for pinpointing location functional genes whole structure. In this study, we conducted. silico chromosome mapping male-specific/linked loci identified potential 11.18 Mb male-linked localized on 19 (SBA19). Repeat annotations revealed abundance transposable elements, particularly Ty3/Gypsy novel repeats. Sequence analysis remnant amh gene, which is considered candidate SDS in many teleosts. A duplicate copy was located at SBA6. These duplicated copies were highly similar to those teleosts, one Y chromosome. Taken all together, hypothesize SBA19 as putative be male-determining region.

Language: Английский

Citations

0

Genetic insights: mapping sex-specific loci in Siamese cobra (Naja kaouthia) sheds light on the putative sex determining region DOI
Wattanawan Jaito, Thitipong Panthum, Syed Farhan Ahmad

et al.

Genes & Genomics, Journal Year: 2023, Volume and Issue: 46(1), P. 113 - 119

Published: Nov. 20, 2023

Language: Английский

Citations

0

Genome-wide SNP analysis provides insights into the XX/XY sex-determination system in silver barb (Barbonymus gonionotus) DOI Open Access
Visarut Chailertrit, Thitipong Panthum,

Lalida Kongkaew

et al.

Genomics & Informatics, Journal Year: 2023, Volume and Issue: 21(4), P. e47 - e47

Published: Dec. 29, 2023

Silver barb (Barbonymus gonionotus) is among the most economically important freshwater fish species in Thailand. It ranks fourth economic value and third production weight for fisheries culture An XX/XY sex-determination system based on gynogenesis was previously reported this fish. In study, molecular basis underlying further investigated. Genome-wide single-nucleotide polymorphism data were generated 32 captive-bred silver individuals, scored by phenotypic sex, to identify sex-linked regions associated with sex determination. Sixty-three male-linked loci, indicating putative XY chromosomes, identified. Male-specific loci not observed, which indicates that Y chromosome young determination region cryptic. A homology search revealed homologous Mariner/Tc1 Gypsy transposable elements are probably remnants of an initial accumulation repeats from early stages differentiation. This research provides convincing insights into mechanism reveals potential barb. The study basic necessary increasing commercial barbs through genetic improvements.

Language: Английский

Citations

0