Allergy,
Journal Year:
2022,
Volume and Issue:
77(4), P. 1312 - 1314
Published: Jan. 12, 2022
Successful
immune
responses
to
severe
acute
respiratory
syndrome
coronavirus
2
(SARS-CoV-2)
usually
limit
viral
replication,
prevent
tissue
damage,
and
promote
recovery,
but
in
a
subset
of
cases,
infection
with
this
virus
can
lead
or
fatal
outcomes.
The
most
forms
2019
(COVID-19)
disease
are
associated
exaggerated
involving
wide
range
inflammatory
mediators
that
disrupt
organ
homeostasis,
reprogram
human
metabolism,
drive
hypercoagulation
state,
destroy
cells
tissues.1,
However,
the
molecular
triggers
underpin
these
uncontrolled
hyperinflammatory
not
well
understood.
A
low
level
bacterial-derived
cellular
fragments
is
present
systemic
circulation
healthy
individuals,
levels
increase
significantly
under
conditions
where
translocation
bacteria
bacterial
components
initiate
intensify
cascades.3
In
study,
we
tested
hypothesis
proinflammatory
across
compromised
epithelial
barrier
into
occurs
those
outcomes
SARS-CoV-2
infection.
As
marker
for
circulation,
quantified
DNA
351
serum
samples
from
171
hospitalized
COVID-19
patients,
56
24
Long
COVID
patients
(longer
than
4
months
since
hospital
discharge),
29
volunteers
(obtained
prior
pandemic),
using
Femto
quantification
kit
(see
Appendix
S1
details).
All
signed
patient
informed
consent,
study
was
approved
by
local
ethics
committees
(EKOS
20/058
St.
Gallen,
Geneva,
Ticino,
Clinical
Research
Ethics
Committee
Cork
Teaching
Hospitals
University
Hospital).
Baseline
characteristics,
underlying
comorbidities,
medication
use
have
already
been
described
detail
summarized
Table
S1.4,
5
Bacterial
were
higher
(Figure
1A).
These
high
declined
over
time
no
longer
elevated
relative
controls
within
3–4
weeks.
Serum
(greater
following
hospitalization)
similar
volunteers,
suggesting
increased
cells/
does
persist
beyond
phase
1B).
We
next
examined
if
earliest
sample
obtained
enrollment
after
admission
intensive
care
unit
(ICU)
ward
severity.
Patients
categorized
mild
there
radiographic
indications
pneumonia,
moderate
pneumonia
fever
tract
symptoms
present.
Severe
defined
as
rate
≥30
breaths
per
minute,
oxygen
saturation
≤93%
when
breathing
ambient
air
PaO2/FiO2
≤300
mm
Hg,
anyone
required
mechanical
ventilation.
Only
died
during
their
stay
recorded
SARS-CoV-2-related
death
study.
highest
who
had
outcome
2).
observed
0%,
21%,
39%
COVID-19,
recovered,
outcome,
respectively
gender,
BMI,
age
S1).
addition,
pre-existing
comorbidities
such
hypertension,
dyslipidemia,
diabetes,
(asthma
COPD)
did
associate
S2).
This
provides
additional
evidence
loss
function
COVID-19.6
data
also
consistent
hypothesis,3
which
highlights
importance
microbes
cross-epithelial
barriers
damaged
external
environmental
factors
pollutants,
toxins,
infections.
Mechanisms
may
include
direct
consequences
impaired
be
indirectly
caused
infection-related
mediators,
oxidative
stress,
microvascular
thrombosis.
Higher
would
likely
accompanied
cell
wall
lipopolysaccharide
peptidoglycan,
potent
immunostimulatory
properties.
do
know
origin
DNA,
it
came
live,
senescent,
fragmented
bacteria.
cannot
determine
cause-and-effect
relationship
our
data,
deficit
contribute
pathology
severity,
become
only
Nevertheless,
early
detection
could
beneficial
planning
clinical
management
while
interventions
designed
improve
host
preventative
therapeutic
strategies
should
further
explored
mitigate
serious
supported
Science
Foundation
Ireland
research
center
grant
12/RC/2273_P2,
project
20/COV/0158.
12/RC/2273_P2
Open
access
funding
enabled
organized
IRel.
LOM
consultant
PrecisionBiotics
has
received
GSK
Chiesi.
participated
speaker's
bureau
Nestle,
Nutricia,
Reckitt,
Abbott.
WCA
advisory
boards
Pfizer,
MSD,
Sanofi,
reimbursements
paid
his
institution.
LAF
SAD
employees
Seqbiome.
None
other
authors
report
any
conflict
interest.
NL,
WCA,
NS,
BB,
JW,
MH,
CS,
PWOT,
contributed
design
securing
funding.
CS
responsible
care,
sample,
collection.
LAF,
SAD,
generated
experimental
performed
analysis.
wrote
paper.
reviewed
manuscript.
Please
note:
publisher
content
functionality
supporting
information
supplied
authors.
Any
queries
(other
missing
content)
directed
corresponding
author
article.
Viruses,
Journal Year:
2023,
Volume and Issue:
15(2), P. 400 - 400
Published: Jan. 31, 2023
A
novel
syndrome
called
long-haul
COVID
or
long
is
increasingly
recognized
in
a
significant
percentage
of
individuals
within
few
months
after
infection
with
SARS-CoV-2.
This
disorder
characterized
by
wide
range
persisting,
returning
even
new
but
related
symptoms
that
involve
different
tissues
and
organs,
including
respiratory,
cardiac,
vascular,
gastrointestinal,
musculo-skeletal,
neurological,
endocrine
systemic.
Some
overlapping
symptomatologies
exist
between
myalgic
encephalomyelitis/chronic
fatigue
(ME/CFS).
Very
much
like
ME/CFS,
infections
herpes
family
viruses,
immune
dysregulation,
the
persistence
inflammation
have
been
reported
as
most
common
pattern
for
development
COVID.
review
describes
several
factors
determinants
proposed,
elaborating
mainly
on
viral
persistence,
reactivation
latent
viruses
such
Epstein–Barr
virus
human
herpesvirus
6
which
are
also
associated
pathology
superantigen
activation
system,
disturbance
gut
microbiome,
multiple
tissue
damage
autoimmunity.
Based
these
factors,
we
propose
diagnostic
strategies
measurement
IgG
IgM
antibodies
against
SARS-CoV-2,
EBV,
HHV-6,
superantigens,
microbiota,
biomarkers
autoimmunity
to
better
understand
manage
this
multi-factorial
continues
affect
millions
people
world.
Allergy,
Journal Year:
2022,
Volume and Issue:
77(11), P. 3185 - 3198
Published: July 8, 2022
Abstract
Microbial
metabolism
of
specific
dietary
components,
such
as
fiber,
contributes
to
the
sophisticated
inter‐kingdom
dialogue
in
gut
that
maintains
a
stable
environment
with
important
beneficial
physiological,
metabolic,
and
immunological
effects
on
host.
Historical
changes
fiber
intake
may
be
contributing
increase
allergic
hypersensitivity
disorders
fiber‐derived
metabolites
are
evolutionarily
hardwired
into
molecular
circuitry
governing
immune
cell
decision‐making
processes.
In
this
review,
we
highlight
importance
ingredient,
its
microbiome,
regulation,
appropriate
timing
intervention
target
any
potential
window
opportunity,
mechanisms
for
fibers
prevention
management
diseases.
addition,
review
human
studies
examining
or
prebiotic
interventions
asthma
respiratory
outcomes,
rhinitis,
atopic
dermatitis,
overall
risk
disorders.
While
exposures,
interventions,
outcomes
were
too
heterogeneous
meta‐analysis,
there
is
significant
using
targeted
manipulations
microbiome
metabolic
functions
promoting
health.
Viruses,
Journal Year:
2023,
Volume and Issue:
15(1), P. 175 - 175
Published: Jan. 7, 2023
The
clinical
course
and
outcome
of
COVID-19
are
highly
variable,
ranging
from
asymptomatic
infections
to
severe
disease
death.
Understanding
the
risk
factors
is
relevant
both
in
setting
at
epidemiological
level.
Here,
we
provide
an
overview
host,
viral
environmental
that
have
been
shown
or
(in
some
cases)
hypothesized
be
associated
with
outcomes.
considered
detail
include
age
frailty,
genetic
polymorphisms,
biological
sex
(and
pregnancy),
co-
superinfections,
non-communicable
comorbidities,
immunological
history,
microbiota,
lifestyle
patient;
variation
infecting
dose;
socioeconomic
factors;
air
pollution.
For
each
category,
compile
(sometimes
conflicting)
evidence
for
association
factor
outcomes
(including
strength
effect)
outline
possible
action
mechanisms.
We
also
discuss
complex
interactions
between
various
factors.
International Journal of Molecular Sciences,
Journal Year:
2024,
Volume and Issue:
25(7), P. 4051 - 4051
Published: April 5, 2024
Bacterial
and
viral
respiratory
tract
infections
are
the
most
common
infectious
diseases,
leading
to
worldwide
morbidity
mortality.
In
past
10
years,
importance
of
lung
microbiota
emerged
in
context
pulmonary
although
mechanisms
by
which
it
impacts
intestinal
environment
have
not
yet
been
fully
identified.
On
contrary,
gut
microbial
dysbiosis
is
associated
with
disease
etiology
or/and
development
lung.
this
review,
we
present
an
overview
microbiome
modifications
occurring
during
infections,
namely,
reduced
community
diversity
increased
burden,
downstream
consequences
on
host–pathogen
interaction,
inflammatory
signals,
cytokines
production,
turn
affecting
progression
outcome.
Particularly,
focus
role
gut–lung
bidirectional
communication
shaping
inflammation
immunity
context,
resuming
both
animal
human
studies.
Moreover,
discuss
challenges
possibilities
related
novel
microbial-based
(probiotics
dietary
supplementation)
microbial-targeted
therapies
(antibacterial
monoclonal
antibodies
bacteriophages),
aimed
remodel
composition
resident
communities
restore
health.
Finally,
propose
outlook
some
relevant
questions
field
be
answered
future
research,
may
translational
relevance
for
prevention
control
infections.
Cell,
Journal Year:
2025,
Volume and Issue:
unknown
Published: Jan. 1, 2025
Industrialization
adversely
affects
the
gut
microbiome
and
predisposes
individuals
to
chronic
non-communicable
diseases.
We
tested
a
restoration
strategy
comprising
diet
that
recapitulated
key
characteristics
of
non-industrialized
dietary
patterns
(restore
diet)
bacterium
rarely
found
in
industrialized
microbiomes
(Limosilactobacillus
reuteri)
randomized
controlled
feeding
trial
healthy
Canadian
adults.
The
restore
diet,
despite
reducing
diversity,
enhanced
persistence
L.
reuteri
strain
from
rural
Papua
New
Guinea
(PB-W1)
redressed
several
features
altered
by
industrialization.
also
beneficially
microbiota-derived
plasma
metabolites
implicated
etiology
Considerable
cardiometabolic
benefits
were
observed
independently
administration,
which
could
be
accurately
predicted
baseline
diet-responsive
features.
findings
suggest
intervention
targeted
toward
restoring
can
improve
host-microbiome
interactions
likely
underpin
pathologies,
guide
recommendations
development
therapeutic
nutritional
strategies.
Critical Care,
Journal Year:
2022,
Volume and Issue:
26(1)
Published: Aug. 18, 2022
Abstract
Gut
microbiota
plays
an
essential
role
in
health
and
disease.
It
is
constantly
evolving
permanent
communication
with
its
host.
The
gut
increasingly
seen
as
organ,
failure,
reflected
by
dysbiosis,
organ
failure
associated
poor
outcomes.
Critically
ill
patients
may
have
altered
microbiota,
namely
a
severe
reduction
“health-promoting”
commensal
intestinal
bacteria
(such
Firmicutes
or
Bacteroidetes)
increase
potentially
pathogenic
(e.g.
Proteobacteria).
Many
factors
that
occur
critically
favour
such
medications
changes
nutrition
patterns.
Dysbiosis
leads
to
several
important
effects,
including
integrity
the
production
of
metabolites
short-chain
fatty
acids
trimethylamine
N-oxide.
There
increasing
evidence
alteration
interact
other
organs,
highlighting
concept
gut–organ
axis.
Thus,
dysbiosis
will
affect
organs
could
impact
on
progression
critical
diseases.
Current
knowledge
only
small
part
what
remains
be
discovered.
precise
contribution
interactions
various
intense
challenging
research
area
offers
exciting
opportunities
for
disease
prevention,
management
therapy,
particularly
care
where
multi-organ
often
focus.
This
narrative
review
provides
overview
normal
composition
functions,
mechanisms
leading
consequences
intensive
setting,
highlights
Allergy,
Journal Year:
2024,
Volume and Issue:
unknown
Published: Oct. 7, 2024
Abstract
The
prevalence
of
many
chronic
noncommunicable
diseases
has
been
steadily
rising
over
the
past
six
decades.
During
this
time,
350,000
new
chemical
substances
have
introduced
to
lives
humans.
In
recent
years,
epithelial
barrier
theory
came
light
explaining
growing
and
exacerbations
these
worldwide.
It
attributes
their
onset
a
functionally
impaired
triggered
by
toxicity
exposed
substances,
associated
with
microbial
dysbiosis,
immune
system
activation,
inflammation.
Diseases
encompassed
share
common
features
such
as
an
increased
after
1960s
or
2000s
that
cannot
(solely)
be
accounted
for
emergence
improved
diagnostic
methods.
Other
traits
include
defects,
dysbiosis
loss
commensals
colonization
opportunistic
pathogens,
circulating
inflammatory
cells
cytokines.
addition,
practically
unrelated
fulfill
criteria
started
emerge
multimorbidities
during
last
Here,
we
provide
comprehensive
overview
discuss
evidence
similarities
epidemiology,
genetic
susceptibility,
dysfunction,
tissue
Allergology International,
Journal Year:
2025,
Volume and Issue:
unknown
Published: Feb. 1, 2025
Immune
health
and
metabolic
functions
are
intimately
connected
via
diet
the
microbiota.
cells
continuously
exposed
to
a
wide
range
of
microbes
microbial-derived
compounds,
with
important
mucosal
systemic
ramifications.
Microbial
fermentation
dietary
components
in
vivo
generates
thousands
molecules,
some
which
integral
molecular
circuitry
that
regulates
immune
functions.
These
turn
protect
against
aberrant
inflammatory
or
hyper-reactive
processes
promote
effector
responses
quickly
eliminate
pathogens,
such
as
SARS-CoV-2.
Potent
tolerance
mechanisms
should
ensure
these
do
not
over-react
non-pathogenic
factors
(e.g.
food
proteins),
while
maintaining
ability
respond
infectious
challenges
robust,
effective
well
controlled
manner.
In
this
review
we
examine
shape
microbiota
composition
interactions
host
system,
their
associations
mediated
disorders
strategies
for
intervention.
Cell Systems,
Journal Year:
2022,
Volume and Issue:
13(8), P. 665 - 681.e4
Published: July 8, 2022
The
clinical
outcome
and
disease
severity
in
coronavirus
2019
(COVID-19)
are
heterogeneous,
the
progression
or
fatality
of
cannot
be
explained
by
a
single
factor
like
age
comorbidities.
In
this
study,
we
used
system-wide
network-based
system
biology
analysis
using
whole
blood
RNA
sequencing,
immunophenotyping
flow
cytometry,
plasma
metabolomics,
single-cell-type
metabolomics
monocytes
to
identify
potential
determinants
COVID-19
at
personalized
group
levels.
Digital
cell
quantification
mononuclear
phagocytes
indicated
substantial
role
coordinating
immune
cells
that
mediate
severity.
Stratum-specific
genome-scale
metabolic
modeling
monocarboxylate
transporter
family
genes
(e.g.,
SLC16A6),
nucleoside
SLC29A1),
metabolites
such
as
α-ketoglutarate,
succinate,
malate,
butyrate
could
play
crucial
Metabolic
perturbations
targeting
central
pathway
(TCA
cycle)
can
an
alternate
treatment
strategy
severe
COVID-19.
Allergy,
Journal Year:
2023,
Volume and Issue:
79(2), P. 353 - 383
Published: Dec. 12, 2023
Abstract
Nutritional
Immunity
is
one
of
the
most
ancient
innate
immune
responses,
during
which
body
can
restrict
nutrients
availability
to
pathogens
and
restricts
their
uptake
by
gut
mucosa
(mucosal
block).
Though
this
be
a
beneficial
strategy
infection,
it
also
associated
with
non‐communicable
diseases—where
pathogen
missing;
leading
increased
morbidity
mortality
as
micronutritional
distribution
in
hindered.
Here,
we
discuss
acute
response
respect
nutrients,
opposing
nutritional
demands
regulatory
inflammatory
cells
particularly
focus
on
some
linked
inflammation
such
iron,
vitamins
A,
Bs,
C,
other
antioxidants.
We
propose
that
while
absorption
certain
micronutrients
hindered
inflammation,
dietary
lymph
path
remains
available.
As
such,
several
clinical
trials
investigated
role
lymphatic
system
protein
absorption,
following
ketogenic
diet
an
intake
antioxidants,
vitamins,
minerals,
reducing
ameliorating
disease.