Science Advances,
Journal Year:
2024,
Volume and Issue:
10(14)
Published: April 5, 2024
Despite
the
importance
of
protein
glycosylation
to
brain
health,
current
knowledge
glycosylated
proteoforms
or
glycoforms
in
human
and
their
alterations
Alzheimer’s
disease
(AD)
is
limited.
Here,
we
report
a
proteome-wide
glycoform
profiling
study
AD
control
brains
using
intact
glycopeptide-based
quantitative
glycoproteomics
coupled
with
systems
biology.
Our
identified
more
than
10,000
N-glycoforms
from
nearly
1200
glycoproteins
uncovered
signatures
altered
glycan
modifications,
including
reduced
sialylation
N-glycan
branching
elongation
as
well
elevated
mannosylation
truncation
AD.
Network
analyses
revealed
higher-order
organization
glycoproteome
into
networks
coregulated
glycans
discovered
modules
associated
clinical
phenotype,
amyloid-β
accumulation,
tau
pathology.
findings
provide
valuable
insights
pathogenesis
rich
resource
changes
pave
way
forward
for
developing
glycosylation-based
therapies
biomarkers
Proceedings of the National Academy of Sciences,
Journal Year:
2024,
Volume and Issue:
121(22)
Published: May 23, 2024
The
prion-like
spread
of
protein
aggregates
is
a
leading
hypothesis
for
the
propagation
neurofibrillary
lesions
in
brain,
including
tau
inclusions
associated
with
Alzheimer’s
disease.
mechanisms
cellular
uptake
seeds
and
subsequent
nucleated
polymerization
cytosolic
are
major
questions
field,
potential
coupling
between
entry
nucleation
has
been
little
explored.
We
found
that
primary
astrocytes
neurons,
endocytosis
leads
to
their
accumulation
lysosomes.
This
turn
lysosomal
swelling,
deacidification,
recruitment
ESCRT
proteins,
but
not
Galectin-3,
membrane.
These
observations
consistent
nanoscale
damage
Live
cell
imaging
STORM
superresolution
microscopy
further
show
occurs
primarily
at
lysosome
membrane
under
these
conditions.
data
suggest
escape
from
lysosomes
via
rather
than
wholesale
rupture
commences
as
soon
fibril
ends
emerge
Frontiers in Pharmacology,
Journal Year:
2024,
Volume and Issue:
15
Published: May 24, 2024
Alois
Alzheimer
described
the
first
patient
with
Alzheimer’s
disease
(AD)
in
1907
and
today
AD
is
most
frequently
diagnosed
of
dementias.
a
multi-factorial
neurodegenerative
disorder
familial,
life
style
comorbidity
influences
impacting
global
population
more
than
47
million
projected
escalation
by
2050
to
exceed
130
million.
In
USA
demographic
encompasses
approximately
six
individuals,
expected
increase
surpass
13
2050,
antecedent
phase
AD,
recognized
as
mild
cognitive
impairment
(MCI),
involves
nearly
12
individuals.
The
economic
outlay
for
management
AD-related
decline
estimated
at
355
billion
USD.
addition,
intensifying
prevalence
cases
countries
modest
intermediate
income
further
enhances
urgency
therapeutically
cost-effective
treatments
improving
quality
patients
their
families.
This
narrative
review
evaluates
pathophysiological
basis
an
initial
focus
on
therapeutic
efficacy
limitations
existing
drugs
that
provide
symptomatic
relief:
acetylcholinesterase
inhibitors
(AChEI)
donepezil,
galantamine,
rivastigmine,
N-methyl-D-aspartate
receptor
(NMDA)
allosteric
modulator,
memantine.
hypothesis
amyloid-β
(Aβ)
tau
are
appropriate
targets
have
potential
halt
progress
critically
analyzed
particular
clinical
trial
data
anti-Aβ
monoclonal
antibodies
(MABs),
namely,
aducanumab,
lecanemab
donanemab.
challenges
dogma
targeting
Aβ
will
benefit
majority
subjects
MABs
unlikely
be
“magic
bullet”.
A
comparison
benefits
disadvantages
different
classes
forms
determining
new
directions
research
alternative
drug
undergoing
pre-clinical
assessments.
we
discuss
stress
importance
treatment
co-morbidities,
including
hypertension,
diabetes,
obesity
depression
known
risk
developing
AD.
Acta Neuropathologica,
Journal Year:
2024,
Volume and Issue:
147(1)
Published: Jan. 30, 2024
Abstract
The
prevalence
of
epilepsy
is
increased
among
Alzheimer’s
Disease
(AD)
patients
and
cognitive
impairment
common
people
with
epilepsy.
Epilepsy
AD
are
linked
but
the
shared
pathophysiological
changes
remain
poorly
defined.
We
aim
to
identify
protein
differences
associated
using
published
proteomics
datasets.
observed
a
highly
significant
overlap
in
AD:
89%
(689/777)
proteins
altered
hippocampus
were
significantly
advanced
AD.
Of
both
AD,
340
same
direction,
while
216
opposite
direction.
Synapse
mitochondrial
markedly
decreased
suggesting
disease
mechanisms.
In
contrast,
ribosome
Notably,
many
interact
tau
or
regulated
by
expression.
This
suggests
that
likely
mediates
Immunohistochemistry
for
Aβ
multiple
phosphorylated
species
(pTau396/404,
pTau217,
pTau231)
showed
trend
intraneuronal
pTau217
pTau231
no
aggregates
amyloid
plaques
hippocampal
sections.
Our
results
provide
insights
into
mechanisms
highlights
potential
role
mediating
pathological
Nature Structural & Molecular Biology,
Journal Year:
2024,
Volume and Issue:
31(6), P. 903 - 909
Published: March 29, 2024
Abstract
Adult
individuals
with
Down
syndrome
(DS)
develop
Alzheimer
disease
(AD).
Whether
there
is
a
difference
between
AD
in
DS
and
regarding
the
structure
of
amyloid-β
(Aβ)
tau
filaments
unknown.
Here
we
report
Aβ
from
two
brains.
We
found
40
(types
IIIa
IIIb)
that
differ
those
previously
reported
sporadic
types
42
(I
II)
identical
to
familial
AD.
Tau
(paired
helical
straight
filaments)
were
AD,
supporting
notion
common
mechanism
through
which
amyloids
trigger
aggregation
tau.
This
knowledge
important
for
understanding
assessing
whether
adults
could
be
included
clinical
trials.
Molecular Neurodegeneration,
Journal Year:
2025,
Volume and Issue:
20(1)
Published: Jan. 7, 2025
Abstract
Background
Neurodegenerative
tauopathies
may
progress
based
on
seeding
by
pathological
tau
assemblies,
whereby
an
aggregate
is
released
from
one
cell,
gains
entry
to
adjacent
or
connected
and
serves
as
a
specific
template
for
its
own
replication
in
the
cytoplasm.
Seeding
into
complex
cytoplasmic
milieu
happens
within
hours,
implying
existence
of
unknown
factors
that
regulate
this
process.
Methods
We
used
proximity
labeling
identify
proteins
control
seed
amplification
5
h
exposure.
fused
split-APEX2
C-terminus
repeat
domain
(RD)
reconstitute
peroxidase
activity
after
seeded
intracellular
aggregation.
Valosin
containing
protein
(VCP/p97)
was
top
hit.
VCP
harbors
dominant
mutations
underlie
two
neurodegenerative
diseases,
multisystem
proteinopathy
vacuolar
tauopathy,
but
mechanistic
role
unclear.
immortalized
cells
human
neurons
study
effects
seeding.
exposed
fibrils
brain
homogenates
cell
culture
media
measured
uptake
induction
aggregation
following
various
genetic
pharmacological
manipulations
VCP.
Results
knockdown
reduced
Chemical
inhibitors
had
opposing
HEK293T
biosensor
neurons:
ML-240
increased
efficiency,
whereas
NMS-873
decreased
it.
The
only
functioned
when
administered
8
exposure,
indicating
early
processing.
screened
30
co-factors
knockout
knockdown.
Reduction
ATXN3,
NSFL1C,
UBE4B,
NGLY1,
OTUB1
seeding,
did
NPLOC4,
which
also
uniquely
soluble
levels.
By
contrast,
reduction
FAF2
Conclusions
Divergent
chemical
cofactor
indicate
regulates
This
consistent
with
processing
centered
directs
seeds
acutely
towards
degradation
vs.
amplification.
Molecular Neurodegeneration,
Journal Year:
2022,
Volume and Issue:
17(1)
Published: March 2, 2022
Abstract
Alzheimer’s
disease
(AD)
is
the
most
common
form
of
dementia,
characterized
by
progressive
cognitive
impairment
and
neurodegeneration.
Extensive
clinical
genomic
studies
have
revealed
biomarkers,
risk
factors,
pathways,
targets
AD
in
past
decade.
However,
exact
molecular
basis
development
progression
remains
elusive.
The
emerging
single-cell
sequencing
technology
can
potentially
provide
cell-level
insights
into
disease.
Here
we
systematically
review
state-of-the-art
bioinformatics
approaches
to
analyze
data
their
applications
14
major
directions,
including
1)
quality
control
normalization,
2)
dimension
reduction
feature
extraction,
3)
cell
clustering
analysis,
4)
type
inference
annotation,
5)
differential
expression,
6)
trajectory
inference,
7)
copy
number
variation
8)
integration
multi-omics,
9)
epigenomic
10)
gene
network
11)
prioritization
subpopulations,
12)
integrative
analysis
human
mouse
sc-RNA-seq
data,
13)
spatial
transcriptomics,
14)
comparison
single
model
studies.
We
also
address
challenges
using
postmortem
tissues
outline
future
developments
analysis.
Importantly,
implemented
our
recommended
workflow
for
each
analytic
direction
applied
them
a
large
nucleus
RNA-sequencing
(snRNA-seq)
dataset
AD.
Key
results
are
reported
while
scripts
shared
with
research
community
through
GitHub.
In
summary,
this
comprehensive
provides
various
offers
specific
guidelines
study
design
variety
directions.
accompanied
software
tools
will
serve
as
valuable
resource
studying
cellular
mechanisms
AD,
other
diseases,
or
biological
systems
at
level.
Molecular Neurodegeneration,
Journal Year:
2022,
Volume and Issue:
17(1)
Published: Oct. 17, 2022
Pathological
tau
aggregation
is
a
primary
neuropathological
feature
of
many
neurodegenerative
diseases.
Intriguingly,
despite
the
common
presence
aggregates
in
these
diseases
affected
brain
regions,
clinical
symptoms,
and
morphology,
conformation,
isoform
ratio
present
varies
widely.
The
tau-mediated
disease
mechanisms
that
drive
are
still
unknown.
Tau
interactome
studies
critically
important
for
understanding
tauopathy.
They
reveal
interacting
partners
define
pathways,
interactions
provide
potential
insight
into
cellular
environment
protein
during
pathological
aggregation.
Here
we
combined
analysis
12
human
tissue,
cell
culture
models
rodent
disease.
Together,
identified
2084
proteins
interact
with
tissue
1152
Our
revealed
consistent
enrichment
between
involved
RNA
binding,
ribosome,
proteasome
function.
Comparison
substantial
differences
two
species.
We
also
performed
second
to
identify
enriched
neurons
containing
granulovacuolar
degeneration
or
neurofibrillary
tangle
pathology.
These
results
timed
dysregulation
as
pathology
develops.
binding
proteins,
particularly
HNRNPs,
emerged
early
disease-associated
interactors
therefore
may
have
an
role
driving
Alzheimer s & Dementia,
Journal Year:
2022,
Volume and Issue:
19(5), P. 1775 - 1784
Published: Oct. 14, 2022
Abstract
Introduction
Synaptic
degeneration
is
a
key
part
of
the
pathophysiology
neurodegenerative
diseases,
and
biomarkers
reflecting
pathological
alterations
are
greatly
needed.
Method
Seventeen
synaptic
proteins
were
quantified
in
pathology‐confirmed
cerebrospinal
fluid
cohort
patients
with
Alzheimer's
disease
(AD;
n
=
63),
frontotemporal
lobar
(FTLD;
53),
Lewy
body
spectrum
disorders
(LBD;
21),
as
well
healthy
controls
(HC;
48).
Results
Comparisons
revealed
four
distinct
patterns:
markers
decreased
across
all
conditions
compared
to
HC
(the
neuronal
pentraxins),
increased
(14‐3‐3
zeta/delta),
selectively
AD
other
(neurogranin
beta‐synuclein),
LBD
FTLD
(AP2B1
syntaxin‐1B).
Discussion
Several
may
serve
for
dysfunction
AD,
LBD,
FTLD.
Additionally,
differential
patterns
protein
seem
be
present
diseases.
Highlights
A
panel
using
mass
spectrometry.
We
disease,
degeneration,
disorders.
Pathology
was
confirmed
by
autopsy
or
familial
mutations.
discovered
cognitive
decline.
found
Frontiers in Aging Neuroscience,
Journal Year:
2022,
Volume and Issue:
14
Published: Nov. 3, 2022
Reduction
and
oxidation
reactions
are
essential
for
biochemical
processes.
They
part
of
metabolic
pathways
signal
transduction.
Reactive
oxygen
species
(ROS)
as
second
messengers
oxidative
modifications
cysteinyl
(Cys)
residues
key
to
transduce
translate
intracellular
intercellular
signals.
Dysregulation
cellular
redox
signaling
is
known
distress,
which
has
been
linked
various
pathologies,
including
neurodegeneration.
Alzheimer's
disease
(AD)
a
neurodegenerative
pathology
both,
abnormal
amyloid
precursor
protein
(APP)
processing,
generating
Aβ
peptide,
Tau
hyperphosphorylation
aggregation.
Signs
distress
in
AD
include:
increase
ROS
(H
2
O
,
•−
),
decrease
the
levels
or
activities
antioxidant
enzymes,
macromolecules
related
elevated
production,
changes
mitochondrial
homeostasis
phosphorylation.
Interestingly,
Cys
present
APP
form
disulfide
bonds
that
important
intermolecular
interactions
might
be
involved
aggregation
Aβ.
Moreover,
two
some
isoforms
have
shown
stabilization
its
interaction
with
microtubules.
Future
research
will
show
complexities
Tau,
interactome,
role
play
progression
AD.
The
specific
modification
also
tightly
connected
regulation
pathways.
Many
these
found
altered
AD,
even
at
very
early
stages.
In
order
analyze
complex
underlying
mechanisms,
several
models
developed,
animal
models,
2D
3D
cell
culture,
ex-vivo
studies
patient
samples.
use
along
innovative,
new
analysis
techniques
further
understand
importance
component
identification
therapeutic
targets
future.