Phylodynamic
models
can
be
used
to
estimate
diversification
trajectories
from
time-calibrated
phylogenies.
Here
we
apply
two
such
phylogenies
of
non-avian
dinosaurs,
a
clade
whose
evolutionary
history
has
been
widely
debated.
Although
some
authors
have
suggested
that
the
experienced
decline
in
diversity,
potentially
starting
millions
years
before
end-Cretaceous
mass
extinction,
others
group
remained
highly
diverse
right
up
until
Cretaceous-Paleogene
(K-Pg)
boundary.
Our
results
show
model
assumptions,
likely
with
respect
incomplete
sampling,
large
impact
on
whether
dinosaurs
appear
long-term
or
not.
The
are
also
sensitive
topology
and
branch
lengths
phylogeny
used.
Developing
comprehensive
sampling
bias,
building
larger
more
accurate
phylogenies,
necessary
steps
for
us
determine
dinosaur
diversity
was
not
extinction.
Science Advances,
Journal Year:
2024,
Volume and Issue:
10(31)
Published: July 31, 2024
The
drivers
of
Ediacaran-Cambrian
metazoan
radiations
remain
unclear,
as
does
the
fidelity
record.
We
use
a
global
age
framework
[580-510
million
years
(Ma)
ago]
to
estimate
changes
in
marine
sedimentary
rock
volume
and
area,
reconstructed
biodiversity
(mean
genus
richness),
sampling
intensity,
integrated
with
carbonate
carbon
isotopes
(δ
Nature Communications,
Journal Year:
2022,
Volume and Issue:
13(1)
Published: May 18, 2022
Global
diversity
patterns
in
the
fossil
record
comprise
a
mosaic
of
regional
trends,
underpinned
by
spatially
non-random
drivers
and
distorted
variation
sampling
intensity
through
time
across
space.
Sampling-corrected
estimates
from
spatially-standardised
datasets
retain
their
biogeographic
nuances
avoid
these
biases,
yet
diversity-through-time
arises
interplay
origination
extinction,
processes
that
shape
macroevolutionary
history.
Here
we
present
subsampling
algorithm
to
eliminate
spatial
bias,
coupled
with
advanced
probabilistic
methods
for
estimating
extinction
rates
Bayesian
method
sampling-corrected
diversity.
We
then
re-examine
Late
Permian
Early
Jurassic
marine
record,
an
interval
spanning
several
global
biotic
upheavals
shaped
origins
modern
biosphere.
find
are
regionally
heterogenous
even
during
events
manifested
globally,
highlighting
need
explicit
views
geological
time.
Science,
Journal Year:
2024,
Volume and Issue:
384(6699), P. 1007 - 1012
Published: May 30, 2024
The
evolutionary
histories
of
major
clades,
including
mammals,
often
comprise
changes
in
their
diversification
dynamics,
but
how
these
occur
remains
debated.
We
combined
comprehensive
phylogenetic
and
fossil
information
a
new
"birth-death
diffusion"
model
that
provides
detailed
characterization
variation
rates
mammals.
found
an
early
rising
sustained
scenario,
wherein
speciation
increased
before
during
the
Cretaceous-Paleogene
(K-Pg)
boundary.
K-Pg
mass
extinction
event
filtered
out
more
slowly
speciating
lineages
was
followed
by
subsequent
slowing
rather
than
rebounds.
These
dynamics
arose
from
imbalanced
process,
with
separate
giving
rise
to
many,
less
speciation-prone
descendants.
Diversity
seems
have
been
brought
about
isolated,
fast-speciating
lineages,
few
punctuated
innovations.
Frontiers in Mammal Science,
Journal Year:
2025,
Volume and Issue:
3
Published: Jan. 7, 2025
Macroevolutionary
studies
using
the
fossil
record
have
provided
valuable
information
about
evolutionary
history
of
mammals,
helping
us
to
understand
some
processes
underlying
shifts
in
diversification
dynamics.
Yet,
most
on
mammal
focused
Northern
Hemisphere.
The
general
view
that
quality
South
American
clades
is
too
limited
has
precluded
continental-level
macroevolutionary
continent.
However,
adequately
evaluate
how
much
we
can
learn
from
record,
need
limitations
affect
uncertainty
estimates.
Here,
investigated
spatiotemporal
distribution
occurrences
eleven
mammalian
and
used
a
Bayesian
approach
accounts
for
incompleteness
analyze
estimates
times
origination
extinction,
extinction
rates
are
affected
by
record.
We
show
main
shortcoming
not
its
overall
but
unevenness.
Most
early
immigrant
lower
preservation
than
late
clades.
Accordingly,
root
age
larger
earlier
Despite
were
still
able
identify
significant
rate
throughout
may
be
explained
environmental
changes.
also
find
discrepancies
with
patterns
inferred
phylogenies,
which
suggest
detect
fossils
might
reflect
regional
trends
or
driven
lineages
higher
preservation.
Contrasting
results
obtained
different
approaches,
such
as
molecular
data,
where
they
converge
diverge,
help
delineate
spatial
scale
phylogenetic
scope
observed
patterns.
Our
work
contributes
better
understanding
opportunities
research
evolution
mammals
Scientific Reports,
Journal Year:
2025,
Volume and Issue:
15(1)
Published: April 30, 2025
The
origin
and
early
diversification
of
ornithopods,
a
major
clade
ornithischian
dinosaurs,
remain
poorly
understood,
with
conflicting
phylogenetic
hypotheses
regarding
rootward
neornithischian
relationships.
Some
topological
stability
is
inferred
near
the
basal
divergence
Iguanodontia,
though
ingroup
relationships
unclear.
For
instance,
Rhabdodontidae,
Late
Cretaceous
European
ornithopods
'traditionally'
considered
to
include
eight
nine
species,
presents
significant
taxonomic
challenges.
We
explore
diversity
disparity
Rhabdodon-lineage
iguanodontians.
assembled
novel
dataset
comprising
morphological
morphometric
data
obtained
from
rhabdodontomorph
dentaries,
which
are
abundant,
well-preserved
in
majority
taxa,
distinctive.
Special
attention
given
Rhabdodon
septimanicus,
known
taxon
upper
Campanian
lower
Maastrichtian
southern
France,
established
based
on
particularly
robust
dentary
bone
that
has
been
subjected
interpretations.
Our
restudy
specimen,
combined
multivariate
assessment,
shows
this
clear
outlier
among
rhabdodontomorphs,
providing
basis
for
its
assignment
new
genus,
Obelignathus.
Although
further
large-scale
studies,
especially
detailed
osteological
descriptions,
needed
clarify
significance
certain
our
results
indicate
group
exhibits
greater
than
currently
recognized,
several
sympatric
taxa
co-occurring,
at
least
France
possibly
also
Romania.
Frontiers in Earth Science,
Journal Year:
2022,
Volume and Issue:
10
Published: June 2, 2022
The
early
Mesozoic
is
marked
by
several
global-scale
environmental
events,
including
the
emplacement
of
large
igneous
provinces,
such
as
Siberian
Traps,
Wrangellia,
and
Central
Atlantic
Magmatic
Province
(CAMP).
These
have
been
hypothesised
drivers
successful
diversification
Pan-Aves,
lineage
archosaurs
closer
to
birds
than
crocodiles.
We
characterize
here
body
size
evolution
terrestrial
pan-avians
(excluding
pterosaurs)
along
Triassic
Early
Jurassic,
using
phylogenetic-
occurrence-based
approaches,
in
an
attempt
test
influence
drivers.
As
diversity
metrics,
we
quantified
raw
species
richness
phylogenetic
(using
time-calibrated
trees),
net
rates
were
estimated
with
PyRate
episodic
fossilized-birth-death
model.
also
characterised
through-time
patterns
(femoral
length)
evolutionary
rates.
Our
results
indicate
that
macroevolutionary
shifts
from
occurrence
data
are
placed
more
recently
time
those
phylogenetic-based
shown
higher
increase,
rates,
disparity
Pan-Aves
Carnian.
This
consistent
hypotheses
suggesting
Carnian
Pluvial
Episode
(CPE)
was
crucial
for
radiation
group.
Yet,
phylogeny-based
show
diversity/diversification
Ladinian
Norian,
a
minor
effect
(CPE).
found
no
meaningful
diversity,
diversification,
or
size-related
metrics
across
Triassic-Jurassic
boundary.
Even
if
end-Triassic
mass
extinction
possibly
emptied
ecospace,
allowing
dinosaur
increase
during
our
suggest
this
expansion
did
not
occur
fast
homogeneously
entire
In
fact,
sustained
reduction
sub-zero
seen
after
extinction,
but
should
be
interpreted
care
towards
end
they
may
biased
“edge
effect.”
Overall,
few
consistently
identified
all
results,
nuanced
complex
anticipated.
The American Naturalist,
Journal Year:
2022,
Volume and Issue:
201(5), P. 680 - 693
Published: Nov. 30, 2022
By
comparing
detrended
estimates
of
diversity
(taxonomic
richness)
and
rates
origination,
extinction,
net
diversification,
I
show
that
at
the
global
scale
over
course
Phanerozoic
eon,
diversification
origination
are
negatively
correlated
with
diversity.
contrast,
extinction
only
weakly
for
most
part.
These
results
hold
both
genus-
species-level
data
many
alternative
analytical
protocols.
The
asymmetry
between
on
one
hand
other
supports
a
model
whereby
is
largely
driven
by
abiotic
perturbations,
subsequent
filling
void
left
depleted
Diversity
dependence
somewhat
weaker,
but
still
evident,
if
initial
Ordovician
radiation
or
rebounds
from
major
mass
extinctions
omitted
analysis;
thus,
influenced,
not
dominated,
these
special
intervals
Earth
history.
In
transition
Paleozoic
to
post-Paleozoic
time,
weakens
while
strengthens;
however,
barely
changes
in
strength.
Despite
nuances,
individual
clades
yield
consistent
those
aggregate
all
animals.
On
whole,
diversity-dependent
appears
be
pervasive
factor
macroevolution
marine
animal
life.
Science Advances,
Journal Year:
2024,
Volume and Issue:
10(30)
Published: July 24, 2024
Species
life-history
traits,
paleoenvironment,
and
biotic
interactions
likely
influence
speciation
extinction
rates,
affecting
species
richness
over
time.
Birth-death
models
inferring
the
impact
of
these
factors
typically
assume
monotonic
relationships
between
single
predictors
limiting
our
ability
to
assess
more
complex
effects
their
relative
importance
interaction.
We
introduce
a
Bayesian
birth-death
model
using
unsupervised
neural
networks
explore
multifactorial
nonlinear
on
rates
fossil
data.
It
infers
lineage-
time-specific
disentangles
predictor
through
explainable
artificial
intelligence
techniques.
Analysis
proboscidean
record
revealed
shaped
by
dietary
flexibility
biogeographic
events.
The
emergence
modern
humans
escalated
causing
recent
diversity
decline,
while
regional
climate
had
lesser
impact.
Our
paves
way
for
an
improved
understanding
intricate
dynamics
shaping
clade
diversification.
Royal Society Open Science,
Journal Year:
2024,
Volume and Issue:
11(8)
Published: Aug. 1, 2024
Phylogenetic
models
are
commonly
used
in
palaeobiology
to
study
the
patterns
and
processes
of
organismal
evolution.
In
human
sciences,
phylogenetic
methods
have
been
deployed
for
reconstructing
ancestor-descendant
relationships
using
linguistic
material
culture
data.
Within
evolutionary
archaeology
specifically,
analyses
based
on
maximum
parsimony
discrete
traits
dominate,
which
sets
limitations
downstream
role
cultural
phylogenies,
once
derived,
can
play
more
elaborate
analytical
pipelines.
Recent
methodological
advances
Bayesian
phylogenetics,
however,
now
allow
us
infer
dynamics
continuous
characters.
Capitalizing
these
developments,
we
here
present
an
exploratory
analysis
macroevolution
projectile
point
shape
evolution
European
Final
Palaeolithic
earliest
Mesolithic
(approx.
15
000-11
000
BP)
a
phylodynamic
approach
fossilized
birth-death
process
model.
This
model-based
leaps
far
beyond
application
parsimony,
that
it
not
only
produces
tree,
but
also
divergence
times,
diversification
rates
while
incorporating
uncertainties.
allows
compare
pronounced
climatic
changes
occurred
during
our
time
frame.
While
common
language,
extension
arguably
represents
major
breakthrough.