bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: Nov. 17, 2023
Abstract
The
Peninsular
Indian
Plate
(PIP),
an
ancient
Gondwanan
landmass,
the
oldest
region
for
diversification
with
complex
geoclimatic
history
in
Tropical
Asia,
harbours
highly
diverse
and
endemic
biota
distinct
biogeographic
affinities.
However,
our
understanding
of
dynamics
its
a
quantitative
framework
is
limited.
Given
this,
we
used
time-calibrated
molecular
phylogenies
birth-death
models
to
examine
tempo,
mode,
drivers
across
34
well-studied
lineages
(∼670
species).
Lineage
identity
affinity
differentially
influenced
rates,
where
plants
had
highest
soil
arthropods
lowest
rates.
Also,
younger
Asian
groups
diversified
faster
than
older
taxa.
gradual
accumulation
was
supported
19
lineages,
suggesting
that
historical
stability
their
habitat
important
driver,
although
has
dynamic
past.
Miocene
aridification,
monsoon
intensification,
changes
paleotemperature,
species
diversity
explained
patterns
among
other
15
lineages.
rates
predicted
better
clade
age
Our
results
highlight
role
regional
biogeographic,
processes,
phylogenetic
on
dynamics,
which
critical
predicting
how
PIP
may
respond
global
change
amid
significant
anthropogenic
threats.
Nature Communications,
Journal Year:
2024,
Volume and Issue:
15(1)
Published: Jan. 22, 2024
Interactions
with
angiosperms
have
been
hypothesised
to
play
a
crucial
role
in
driving
diversification
among
insects,
particular
emphasis
on
pollinator
insects.
However,
support
for
coevolutionary
insect-plant
interactions
is
weak.
Macroevolutionary
studies
of
insect
and
plant
diversities
the
hypothesis
that
diversified
after
peak
diversity
Early
Cretaceous.
Here,
we
used
family-level
fossil
record
insects
as
whole,
families
particular,
estimate
rates
macroevolutionary
history
using
Bayesian
process-based
approach.
We
found
played
dual
changed
through
time,
mitigating
extinction
Cretaceous
promoting
origination
Cenozoic,
which
also
recovered
only.
Although
pollinated
gymnosperms
before
angiosperm
radiation,
radiation
new
lineages
began
increased,
particularly
significant
50
Ma.
global
temperature,
increases
diversity,
spore
plants
were
strongly
correlated
rates,
suggesting
multiple
drivers
influenced
arguing
investigation
different
explanatory
variables
further
studies.
Geological Society London Special Publications,
Journal Year:
2024,
Volume and Issue:
549(1)
Published: April 17, 2024
The
current
status
of
the
Sino-Himalayan
region
as
a
biodiversity
hotspot,
particularly
for
flora,
has
often
been
linked
to
uplift
Sino-Tibetan
Plateau
and
Himalayan
Hengduan
Mountains.
However,
relationship
between
topological
development
onset
diversification
is
yet
be
confirmed.
Here,
we
apply
Bayesian
phylodynamic
methods
large
phylogeny
angiosperm
species
from
Sino-Himalayas
infer
changes
in
their
rates
evolution
through
time.
We
find
strong
evidence
high
Paleocene,
late
Miocene
Pliocene,
negative
Quaternary
driven
by
an
increase
extinction
rates.
Our
analyses
suggest
that
global
palaeotemperatures
are
unlikely
driving
force
these
rate
shifts.
Instead,
collision
Indian
continent
with
Eurasia
coeval
topographic
change
Sino-Himalayas,
Grassland
Expansion
impact
Pleistocene
glaciations
on
this
altitudinally
variable
may
have
also
demonstrate
influence
choice
times
shape
inferred
piecewise-constant
trajectories
phylodynamics,
advocate
use
prior
information
when
making
decision.
Paleobiology,
Journal Year:
2025,
Volume and Issue:
unknown, P. 1 - 14
Published: Jan. 21, 2025
Abstract
Mass
extinctions
are
natural
experiments
on
the
short-
and
long-term
consequences
of
pushing
biotas
past
breaking
points,
often
with
lasting
effects
structure
function
biodiversity.
General
properties
mass
extinctions—exceptionally
severe,
taxonomically
broad,
global
losses
taxa—are
starting
to
come
into
focus
through
comparisons
among
dimensions
biodiversity,
including
morphological,
functional,
phylogenetic
diversity.
Notably,
functional
diversity
tends
persist
despite
severe
taxonomic
diversity,
whereas
taxic
morphological
may
or
not
be
coupled.
One
biggest
challenges
in
synthesizing
extracting
general
these
events
has
been
that
they
driven
by
multiple,
interacting
pressures,
taxa
their
traits
vary
events,
making
it
difficult
link
single
stressors
specific
traits.
Ongoing
improvements
stratigraphic
resolution
for
multiple
clades
will
sharpen
tests
selectivity
help
isolate
hitchhiking
effects,
whereby
organismal
carried
differential
survival
extinction
owing
other
higher-level
attributes,
such
as
geographic-range
size.
Direct
comparative
analyses
across
also
clarify
impacts
particular
drivers
taxa,
traits,
morphologies.
It
is
just
filter
deserves
attention,
longer-term
impact
derives
part
from
ensuing
rebounds.
More
work
needed
uncover
biotic
abiotic
circumstances
spur
some
re-diversification
while
relegating
others
marginal
shares
Combined
insights
filters
rebounds
bring
a
macroevolutionary
view
approaching
biodiversity
crisis
Anthropocene,
helping
pinpoint
clades,
groups,
morphologies
most
vulnerable
failed
Biology Letters,
Journal Year:
2023,
Volume and Issue:
19(9)
Published: Sept. 1, 2023
The
Cretaceous-Palaeogene
mass
extinction
event
(K-Pg)
witnessed
upwards
of
75%
animal
species
going
extinct,
most
notably
among
these
are
the
non-avian
dinosaurs.
A
major
question
in
macroevolution
is
whether
this
influenced
rise
flowering
plants
(angiosperms).
fossil
record
suggests
that
K-Pg
had
a
strong
regional
impact
on
angiosperms
with
up
to
extinctions,
but
only
minor
rates
lineages
(families
and
orders).
Phylogenetic
evidence
for
angiosperm
dynamics
through
time
remains
unexplored.
By
analysing
two
mega-phylogenies
containing
approximately
32
000-73
000
extant
species,
here
we
show
relatively
constant
throughout
geological
no
at
boundary.
Despite
high
species-level
observed
record,
our
results
support
macroevolutionary
resilience
via
survival
higher
lineages.
New Phytologist,
Journal Year:
2023,
Volume and Issue:
241(3), P. 1348 - 1360
Published: Nov. 29, 2023
Summary
Flowers
are
the
complex
and
highly
diverse
reproductive
structures
of
angiosperms.
Because
their
role
in
sexual
reproduction,
evolution
flowers
is
tightly
linked
to
angiosperm
speciation
diversification.
Accordingly,
quantification
floral
morphological
diversity
(disparity)
among
subgroups
through
time
may
give
important
insights
into
evolutionary
history
angiosperms
as
a
whole.
Based
on
comprehensive
dataset
focusing
30
characters
describing
structure
across
angiosperms,
we
used
1201
extant
121
fossil
measure
disparity
explore
patterns
lineages.
We
found
that
reached
highest
Early
Cretaceous.
However,
decreasing
toward
present
likely
has
not
precluded
innovation
other
traits
at
levels,
which
played
key
outstanding
species
richness.
Angiosperms
occupy
specific
regions
theoretical
morphospace,
indicating
only
portion
possible
trait
combinations
observed
nature.
The
ANA
grade,
magnoliids,
early‐eudicot
grade
large
areas
morphospace
(higher
disparity),
whereas
nested
groups
narrower
(lower
disparity).
Last
year,
a
study
published
in
Biology
Letters
by
Thompson
and
Ramírez-Barahona
(2023)
argued
that,
according
to
analyses
of
diversification
on
two
massive
molecular
phylogenies
comprising
thousands
species,
there
is
no
evidence
that
angiosperms
(i.e.,
flowering
plants)
were
affected
the
Cretaceous-Paleogene
mass
extinction.
Here
I
show
these
conclusions
are
flawed
from
both
methodological
philosophical
perspectives.
demonstrate
methods
used
their
possess
statistical
limitations
strongly
reduce
power
detect
true
extinction
event
using
data
similar
those
analyzed
(2023).
Additionally,
use
as
springboard
examine
relationship
between
phylogenetic
fossil
studies.
Communications Biology,
Journal Year:
2024,
Volume and Issue:
7(1)
Published: March 14, 2024
Abstract
The
living
fossil
metaphor
is
tightly
linked
with
the
cycads.
This
group
of
gymnosperms
supposed
to
be
characterised
by
long-term
morphological
stasis,
particularly
after
their
peak
diversity
and
disparity
in
Jurassic.
However,
no
formal
test
this
hypothesis
exists.
Here,
we
use
a
recent
phylogenetic
framework
an
improved
character
matrix
reconstruct
Disparity
Through
Time
for
cycad
leaves
using
Principal
Coordinate
Analysis
employing
Pre-Ordination
Ancestral
State
Reconstruction
impact
sampling
on
results.
Our
analysis
shows
that
leaf
morsphospace
expanded
up
present,
numerous
shifts
its
general
positioning,
independently
biases.
Moreover,
they
also
show
Zamiaceae
rapidly
Early
Cretaceous
continued
expand
while
now-extinct
clades
experienced
slow
contraction
from
Triassic.
We
rates
evolution
were
constantly
high
Cretaceous,
then
slight
decrease
Paleogene,
followed
Neogene
acceleration.
These
results
much
more
dynamic
history
cycads,
suggest
‘living
fossil’
actually
hindrance
our
understanding
macroevolution.
Biology Letters,
Journal Year:
2024,
Volume and Issue:
20(8)
Published: Aug. 1, 2024
Last
year,
we
published
research
using
phylogenetic
comparative
methods
(PCMs)
to
reveal
no
evidence
for
elevated
lineage-level
extinction
rates
in
angiosperms
across
K-Pg
(Thompson
JB,
Ramírez-Barahona
S.
2023
No
angiosperm
mass
at
the
Cretaceous–Palaeogene
(K-Pg)
boundary.
Biol.
Lett.
19
,
20230314.
(
https://doi.org/10.1098/rsbl.2023.0314
)),
results
that
are
step
with
global
fossil
record.
In
a
critique
of
our
paper
(Hagen
ER.
2024
A
Thompson
and
(2023)
or:
how
I
learned
stop
worrying
love
20
2020240039
https://doi.org/10.1098/rsbl.2024.0039
simulation
work
is
presented
argue
erred
methodological
choices
interpretations,
should
have
deferred
evidence.
opinion,
underlying
this
poor
on
simulations
philosophical
problems
surrounding
definition
event,
which
leads
incorrect
interpretations
both
record
PCMs.
We
further
deferring
one
source
favour
other
shuts
door
important
evolutionary
questions.