Challenges in estimating species age from phylogenetic trees DOI Creative Commons
Carlos Calderón del Cid, Torsten Hauffe, Juan D. Carrillo

et al.

bioRxiv (Cold Spring Harbor Laboratory), Journal Year: 2023, Volume and Issue: unknown

Published: Nov. 19, 2023

Abstract Aim Species age, the elapsed time since origination, can give an insight into how species longevity might influence eco-evolutionary dynamics and has been hypothesized to extinction risk. Traditionally, ages have measured in fossil record. However, recently, numerous studies attempted estimate of extant from branch lengths time-calibrated phylogenies. This approach poses problems because phylogenetic trees contain direct information about identity only at tips not along branches. Here, we show that incomplete taxon sampling, extinction, different assumptions speciation modes significantly alter relationship between true age lengths, leading high error rates. We found these biases lead erroneous interpretations patterns derived comparison other traits, such as Innovation For bifurcating speciation, which is default assumption most analyses, propose a probabilistic improve estimation ages, based on properties birth-death process. our model reduce by one order magnitude under cases percentage unsampled species. Main conclusion Our results call for caution interpreting this biased conclusions. that, bifurcate, it possible obtain better approximations combining with expectations

Language: Английский

The relationships between species age and range size DOI
Qinfeng Guo, Hong Qian, Jian Zhang

et al.

Journal of Biogeography, Journal Year: 2024, Volume and Issue: 51(6), P. 1095 - 1103

Published: Feb. 5, 2024

Abstract Species range size is a central topic in macroecology, biogeography and conservation biology. age has been frequently regarded as contributor to previous studies on size, but this rarely specifically examined. Using global data from four living terrestrial vertebrate classes (birds, mammals, reptiles amphibians) case study, we examine how species might be related at scale. We found statistically significant positive, albeit weak, age–range relationships for all groups. However, although the were with young ages had very different sizes (both large small), those old always small ranges. The observed more complex than expected. rather strong, could because our set included stages of their life spans (durations) that are either expanding or fluctuating contracting, which would necessarily have minimized cancelled relationship when group considered collectively. Our findings shed new light temporal dimension macroecological correlates

Language: Английский

Citations

4

Large range sizes link fast life histories with high species richness across wet tropical tree floras DOI Creative Commons
Timothy R. Baker, Stephen Adu‐Bredu,

Kofi Affum‐Baffoe

et al.

Scientific Reports, Journal Year: 2025, Volume and Issue: 15(1)

Published: Feb. 8, 2025

Understanding how the traits of lineages are related to diversification is key for elucidating origin variation in species richness. Here, we test whether richness among trees from all major biogeographical settings lowland wet tropics. We explore mortality rate, breeding system and maximum diameter richness, either directly or via associations with range size, 463 genera that contain tropical forest trees. For Amazonian genera, also mean species-level size. Lineages higher rates—faster life-history strategies—have larger ranges biogeographic have sizes Amazonia. These smaller diameters and, Americas, dioecious species. In turn, greater overall size Our results show fast strategies influence because these ecological sizes. links suggest dispersal has been a process evolution flora.

Language: Английский

Citations

0

Dispersal‐related plant traits are associated with range size in the Atlantic Forest DOI Creative Commons
Isis Petrocelli, Adriana Alzate, Alexander Zizka

et al.

Diversity and Distributions, Journal Year: 2024, Volume and Issue: 30(7)

Published: May 28, 2024

Abstract Aim The efficiency of animal‐mediated seed dispersal is threatened by the decline animal populations, especially in tropical forests. We hypothesise that large‐seeded plants with tend to have limited geographic ranges and face an increased risk extinction due potential large‐bodied fruit‐eating seed‐dispersing animals (frugivores). Location Atlantic Forest, Brazil, South America. Taxon Angiosperms. Methods First, we collected dispersal‐related traits (dispersal syndrome, fruit size, size), growth form (tree, climber, other) preferred vegetation type (open closed) data for 1052 Forest plant species. Next, integrated these occurrence records, assessments, phylogenetic trees. Finally, performed generalised least squares regressions test direct interactive effects on geographical range size. Results Large‐seeded species had smaller sizes than small‐seeded species, but only dispersal, not those dispersed abiotic mechanisms. However, overall dispersal. Furthermore, found restricted forests occurring open or mixed vegetation. at 29% flora extinction, this was related syndromes. Main Conclusions may be suffering from limitation, potentially past ongoing defaunation frugivores, leading small sizes. Other factors, such as deforestation fragmentation, will probably modulate ultimately extinction. Our study sheds light relationship between traits, mutualistic interactions, distribution are key functioning

Language: Английский

Citations

2

Challenges in estimating species' age from phylogenetic trees DOI Creative Commons
Carlos Calderón del Cid, Torsten Hauffe, Juan D. Carrillo

et al.

Global Ecology and Biogeography, Journal Year: 2024, Volume and Issue: 33(10)

Published: July 4, 2024

Abstract Aim Species age, the elapsed time since origination, can give insight into how species longevity might influence eco‐evolutionary dynamics, which has been hypothesized to extinction risk. Traditionally, species' ages have estimated from fossil records. However, numerous studies recently used branch lengths of time‐calibrated phylogenies as estimates extant species. This approach poses problems because phylogenetic trees only contain direct information about identity at tips and not along branches. Here, we show that incomplete taxon sampling, different assumptions speciation modes significantly alter relationship between true age lengths, leading high error rates. We found these biases lead erroneous interpretations patterns derived comparing other traits, such Innovation For bifurcating speciation, default assumption in most analyses propose a probabilistic based on properties birth–death process improve estimation ages. Our reduce by one order magnitude under cases percentage unsampled Main conclusion results call for caution interpreting this biased conclusions. that, obtain unbiased approximations combining with expectations process.

Language: Английский

Citations

0

Recent Origin of a Range‐Restricted Species With Subsequent Introgression in its Widespread Congener in the Phyteuma spicatum Group (Campanulaceae) DOI Creative Commons
Dennis J. Larsson, Petra Šarhanová, Ovidiu Paun

et al.

Molecular Ecology, Journal Year: 2024, Volume and Issue: unknown

Published: Dec. 13, 2024

ABSTRACT Understanding the causes of restricted geographic distributions is major interest to evolutionary and conservation biologists. Inferring historical factors has often relied on ad hoc interpretations genetic data, hypothesis testing within a statistical framework under different demographic scenarios remains underutilised. Using coalescent modelling RAD‐sequencing we (i) test hypotheses about origin Phyteuma gallicum (Campanulaceae), range‐restricted endemic central France sympatric with its widespread congener Ph. spicatum , (ii) date origin, irrespective mode that range due recent time origin. The best supported model one dichotomous split confirmed as distinct species, Central European nigrum subsequent gene flow between . estimated at 45–55,000 years ago. Coalescent genomic data not only clarified (dichotomous speciation instead previously hypothesised hybridogenic origin) but also identified recency sufficient, although likely sole, factor explain distribution range. strongly improves our understanding evolution species are frequently concern, case for

Language: Английский

Citations

0

Challenges in estimating species age from phylogenetic trees DOI Creative Commons
Carlos Calderón del Cid, Torsten Hauffe, Juan D. Carrillo

et al.

bioRxiv (Cold Spring Harbor Laboratory), Journal Year: 2023, Volume and Issue: unknown

Published: Nov. 19, 2023

Abstract Aim Species age, the elapsed time since origination, can give an insight into how species longevity might influence eco-evolutionary dynamics and has been hypothesized to extinction risk. Traditionally, ages have measured in fossil record. However, recently, numerous studies attempted estimate of extant from branch lengths time-calibrated phylogenies. This approach poses problems because phylogenetic trees contain direct information about identity only at tips not along branches. Here, we show that incomplete taxon sampling, extinction, different assumptions speciation modes significantly alter relationship between true age lengths, leading high error rates. We found these biases lead erroneous interpretations patterns derived comparison other traits, such as Innovation For bifurcating speciation, which is default assumption most analyses, propose a probabilistic improve estimation ages, based on properties birth-death process. our model reduce by one order magnitude under cases percentage unsampled species. Main conclusion Our results call for caution interpreting this biased conclusions. that, bifurcate, it possible obtain better approximations combining with expectations

Language: Английский

Citations

0