bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2022,
Volume and Issue:
unknown
Published: June 12, 2022
ABSTRACT
Combating
the
current
biodiversity
crisis
requires
accurate
documentation
of
population
responses
to
human-induced
ecological
change.
To
this
end,
museum
collections
preserve
a
record
anthropogenic
change
that
can
provide
critical
baseline
data
on
patterns
genetic
diversity,
connectivity,
and
structure.
We
leveraged
spatially-replicated
time
series
specimens
document
genomic
destruction
nearly
90%
coastal
habitats
occupied
by
Savannah
sparrow
(
Passerculus
sandwichensis
)
in
California.
Spatial-temporal
analyses
diversity
from
219
sparrows
collected
between
1889-2017
showed
amount
habitat
lost
was
not
predictive
loss.
Despite
experiencing
greatest
levels
loss,
we
found
San
Francisco
Bay
Area
remained
relatively
high.
Over
past
century,
immigration
into
interior
populations
has
also
increased.
This
may
have
minimized
declines,
but
likely
led
erosion
divergence
at
loci
associated
with
tidal
marsh
adaptation.
Tracing
trajectories
multiple
over
provided
unique
insights
how
shifting
gene
flow
through
response
loss
contribute
negative
fitness
consequences.
Proceedings of the National Academy of Sciences,
Journal Year:
2022,
Volume and Issue:
119(34)
Published: Aug. 16, 2022
Field
biology
is
an
area
of
research
that
involves
working
directly
with
living
organisms
in
situ
through
a
practice
known
as
"fieldwork."
Conducting
fieldwork
often
requires
complex
logistical
planning
within
multiregional
or
multinational
teams,
interacting
local
communities
at
field
sites,
and
collaborative
led
by
one
few
the
core
team
members.
However,
existing
power
imbalances
stemming
from
geopolitical
history,
discrimination,
professional
position,
among
other
factors,
perpetuate
inequities
when
conducting
these
endeavors.
After
reflecting
on
our
own
programs,
we
propose
four
general
principles
to
guide
equitable,
inclusive,
ethical,
safe
practices
biology:
be
collaborative,
respectful,
legal,
safe.
Although
many
biologists
already
structure
their
programs
around
similar
values,
executing
equitable
can
prove
challenging
careful
consideration,
especially
those
positions
relatively
greater
privilege.
Based
experiences
input
diverse
group
global
collaborators,
provide
suggestions
for
action-oriented
approaches
make
more
particular
attention
how
privilege
contribute.
While
acknowledge
not
all
will
applicable
every
institution
program,
hope
they
generate
discussions
baseline
training
proactive,
practices.
Journal of Heredity,
Journal Year:
2022,
Volume and Issue:
114(4), P. 367 - 384
Published: Dec. 8, 2022
To
avoid
the
worst
outcomes
of
current
biodiversity
crisis
we
need
a
deep
understanding
population
responses
to
human-induced
ecological
change.
Rapidly
expanding
access
genomic
resources
for
nonmodel
taxa
promises
play
unique
role
in
meeting
this
goal.
In
particular,
increasing
feasibility
sequencing
DNA
from
historical
specimens
enables
direct
measures
past
century
anthropogenic
change
that
will
inform
management
strategies
and
refine
projections
species
future
environmental
review,
discuss
methods
can
be
used
generate
genome-scale
data
hundreds
millions
housed
natural
history
collections
around
world.
We
then
highlight
recent
studies
utilize
address
questions
fundamental
importance
conservation.
Finally,
emphasize
how
traditional
motivations
museum
collectors,
such
as
geographic
variation
community-wide
inventories,
provide
opportunities
broad
scale
comparisons
across
time.
conclude
technologies
become
increasingly
accessible
more
researchers
take
advantage
resource,
conservation
continue
grow.
BMC Biology,
Journal Year:
2025,
Volume and Issue:
23(1)
Published: Jan. 7, 2025
Abstract
Background
Rapid
morphological
change
is
emerging
as
a
consequence
of
climate
in
many
systems.
It
intuitive
to
hypothesize
that
temporal
trends
are
driven
by
the
same
selective
pressures
have
established
well-known
ecogeographic
patterns
over
spatial
environmental
gradients
(e.g.,
Bergman’s
and
Allen’s
rules).
However,
mechanistic
understanding
contemporary
shifts
lacking.
Results
We
combine
data
whole
genome
sequencing
from
four-decade
dataset
migratory
bird
hermit
thrush
(
Catharus
guttatus
)
test
whether
time
accompanied
genetic
change.
Using
genome-wide
association,
we
identify
alleles
associated
with
body
size,
bill
length,
wing
length.
Shifts
morphology
concordant
morphology-associated
would
support
basis
for
observed
changes
recent
decades,
potentially
an
adaptive
response
In
our
data,
size
decreases
were
paralleled
size-associated
alleles.
On
other
hand,
showed
no
shift
frequency
time.
Conclusions
Together,
results
show
mixed
evolutionary
explanations
Temporal
hypothesis
selection
driving
trends.
The
lack
evidence
could
be
explained
large
role
plasticity
or
technical
limitations
likely
polygenic
architecture
both.
Disentangling
mechanisms
responsible
changing
environments
will
vital
predicting
future
organismal
population
responses
Evolutionary Applications,
Journal Year:
2020,
Volume and Issue:
14(2), P. 607 - 624
Published: Oct. 6, 2020
Abstract
Natural
history
collections
provide
an
unparalleled
resource
for
documenting
population
responses
to
past
anthropogenic
change.
However,
in
many
cases,
traits
measured
on
specimens
may
vary
temporally
response
a
number
of
different
pressures
or
demographic
processes.
While
teasing
apart
these
drivers
is
challenging,
approaches
that
integrate
analyses
spatial
and
temporal
series
can
robust
framework
examining
whether
exhibit
common
ecological
variation
space
time.
We
applied
this
approach
analyze
bill
morphology
California
Savannah
Sparrows
(
Passerculus
sandwichensis
).
found
surface
area
increased
birds
from
higher
salinity
tidal
marshes
are
hotter
drier.
Only
the
coastal
subspecies,
alaudinus,
exhibited
significant
increase
size
through
As
with
patterns
variation,
alaudinus
populations
occupying
have
become
warmer
drier
over
century
greatest
increases
area.
also
negative
correlation
between
total
evaporative
water
loss
(TEWL)
estimated
observed
could
result
reduction
up
16.2%
daily
losses.
Together,
were
consistent
hypothesis
larger
bills
favored
freshwater‐limited
environments
as
mechanism
dissipating
heat,
reducing
reliance
cooling,
increasing
conservation.
With
museum
increasingly
being
leveraged
understand
global
change,
work
highlights
importance
considering
influence
axes
change
integrating
better
specific
human
impacts
Global Change Biology,
Journal Year:
2024,
Volume and Issue:
30(1)
Published: Jan. 1, 2024
Abstract
Combating
the
current
biodiversity
crisis
requires
accurate
documentation
of
population
responses
to
human‐induced
ecological
change.
However,
our
ability
pinpoint
human
activities
is
often
limited
analysis
populations
studied
well
after
fact.
Museum
collections
preserve
a
record
anthropogenic
change
that
can
provide
critical
baseline
data
on
patterns
genetic
diversity,
connectivity,
and
structure
prior
onset
perturbation.
Here,
we
leverage
spatially
replicated
time
series
specimens
document
genomic
destruction
nearly
90%
coastal
habitats
occupied
by
Savannah
sparrow
(
Passerculus
sandwichensis
)
in
California.
We
sequenced
219
sparrows
collected
from
1889
2017
across
state
California
using
an
exome
capture
approach.
Spatial–temporal
analyses
diversity
found
amount
habitat
lost
was
not
predictive
loss.
Sparrow
southern
historically
exhibited
lower
levels
experienced
most
significant
temporal
declines
diversity.
Despite
experiencing
greatest
loss,
San
Francisco
Bay
area
remained
relatively
high.
This
potentially
related
observed
increase
gene
flow
into
Area
other
populations.
While
may
have
minimized
declines,
also
immigration
inland
freshwater‐adapted
tidal
marsh
led
erosion
divergence
at
loci
associated
with
adaptation.
Shifting
through
response
loss
thus
contribute
negative
fitness
consequences
outbreeding
depression.
Together,
results
underscore
importance
tracing
trajectories
multiple
over
address
issues
fundamental
conservation
concern.
Integrative and Comparative Biology,
Journal Year:
2024,
Volume and Issue:
unknown
Published: June 3, 2024
Projected
rates
of
climate
change
over
the
next
century
are
expected
to
force
species
shift
ranges,
adapt
or
acclimate
evade
extinction.
Predicting
which
these
scenarios
may
be
most
likely
is
a
central
challenge
for
conserving
biodiversity
in
immediate
future.
Modeling
frameworks
that
take
advantage
intraspecific
variation
across
environmental
gradients
can
particularly
important
meeting
this
challenge.
While
space-for-time
approaches
essential
climatic
and
genomic
modeling
approaches,
mechanistic
models
incorporate
ecological
physiology
data
into
assessing
vulnerabilities
rarely
include
variation.
A
major
reason
gap
general
lack
empirical
on
geographic
avian
physiological
traits.
In
review,
we
outline
evidence
processes
shaping
We
use
example
evaporative
water
loss
underscore
research
even
traits
cooling
costs
birds.
demonstrate
how
shifting
focus
facilitate
greater
integration
with
emerging
genomics
approaches.
Finally,
steps
an
integrative
approach
advance
understanding
adaptation
within
species.
Addressing
knowledge
gaps
outlined
review
will
contribute
improved
predictive
framework
synthesizes
environmental,
morphological,
physiological,
assess
specific
warming
planet.
Journal of Avian Biology,
Journal Year:
2024,
Volume and Issue:
unknown
Published: July 3, 2024
Unidimensional
measurements
for
estimating
bill
size,
like
length
and
width,
are
commonly
used
in
ecology
evolution,
but
can
be
criticised
due
to
issues
with
repeatability
accuracy.
Furthermore,
formula‐based
estimates
of
surface
area
tend
assume
uniform
shapes
across
species,
which
is
rarely
the
case.
3D
scanning
potentially
help
overcome
some
such
by
collecting
detailed
external
morphology
direct
area,
rather
than
composite
size.
Here,
we
evaluate
use
scanners
on
avian
museum
specimens
test
3D‐based
compare
these
traditional
methods
size
from
unidimensional
measurements.
Using
28
Australian
bird
investigate
inter‐observer
scans.
We
then
infer
accuracy
precision
area.
find
that
morphometric
scans
highly
repeatable
between
observers,
without
need
extensive
training,
demonstrating
an
advantage
over
measuring
methods,
callipers.
When
comparing
most
formulae
consistently
underestimate
considerable
variation
species.
Where
not
possible,
a
cone
formula
precise
diverse
shapes,
therefore
supporting
its
interspecific
contexts.
However,
incorporating
additional
measure
curvature
into
improves
calculated
Our
results
reveal
high
potential
research,
especially
studies
necessitating
large
sample
sizes
collected
multiple
gives
suggestions
approaches
estimate
Journal of Avian Biology,
Journal Year:
2021,
Volume and Issue:
2022(1)
Published: Nov. 15, 2021
Bird
bills
possess
an
important
thermoregulatory
function
as
they
are
a
site
for
environmental
heat
exchange.
Previous
studies
have
demonstrated
that
birds
in
warmer
climates
larger
than
those
living
colder
climates,
can
dissipate
more
heat.
Because
this
dry
transfer
does
not
incur
water
loss,
it
may
be
additionally
advantageous
water‐restricted
habitats.
Here,
we
examine
the
influence
of
climate
on
bill
morphology
Toxostoma
thrashers,
group
10
North
American
species
varied
and
occupied
niche,
with
several
inhabiting
arid
climates.
Past
examinations
thrasher
only
considered
foraging,
leaving
unanswered
role
morphological
divergence
within
group.
We
photographed
476
museum
specimens
encompassing
all
calculated
measurements
from
photos
using
MATLAB‐based
program.
For
each
species,
niche
data
WorldClim
describing
temperature
precipitation.
found
no
reliable
significant
relationships
between
variables
across
suggesting
other
factors
such
foraging
behavior
shaping
genus.
Within
three
follow
Allen's
rule.
However,
also
strength
direction
species.
Notably,
negative
relationship
maximum
hottest
month
surface
area
LeConte's
thrasher,
which
occupies
most
thrashers.
This
adds
to
evidence
rule
reverse
extremely
hot
when
become
sink
instead
radiator.
These
results
demonstrate
importance
considering
generality
ecogeographical
rules
lineages
occupy
extreme
Behavioral Ecology and Sociobiology,
Journal Year:
2022,
Volume and Issue:
77(1)
Published: Dec. 20, 2022
Abstract
Maintaining
homeothermy
may
be
a
major
challenge
when
species
are
confronted
with
ambient
temperatures
beyond
their
thermoneutral
zone.
Bird
occupying
open
landscapes
inherently
exposed
to
acute
heat
loss
and
gain,
which
force
them
adopt
suite
of
behavioural
physiological
strategies
maintain
homeothermy.
Both
types
responses
could
influenced
by
relative
bill
leg
sizes,
but
experimental
data
lacking.
Here,
we
evaluated
how
variation
in
body
postural
adjustments,
panting,
locomotor
activity
the
dunlin
Calidris
alpina
can
explained
temperature
sizes.
Additionally,
estimated
resting
metabolic
rate
evaporative
water
assess
potential
links
between
both
traits
Temperatures
below
zone
were
counteracted
enhancing
production
through
increased
activity,
while
adjustments
used
less
than
expected.
Within
zone,
back
rest
(tucking
under
feathers)
unipedal
(standing
on
one
leg)
preferred
dunlins,
probably
as
being
more
comfortable
for
resting.
At
above
dunlins
inactive
time
exposure
wet-sitting
ultimately
panting
challenged
37
°C.
Interestingly,
temperature,
birds
relatively
longer
bills
legs
spent
exposing
them,
increase
dry
transfer
into
environment.
Our
findings
also
highlighted
importance
availability
wet
substrates
minimising
stress
wetland
species.
Significance
statement
Recent
correlational
field
studies
found
support
relationship
sizes
thermoregulatory
behaviour
inhabiting
landscapes.
However,
lacking,
mechanisms
underlying
this
remain
poorly
understood.
performed
an
experiment
model
change
,
long-billed
long-legged
shorebird.
examined
among
rates,
appendage
showed
strong
well
link
size
postures.
have
conservation
message
highlighting
that
type
substrate
available
roosting
is
important