Microbiota in intestinal digesta of Atlantic salmon (Salmo salar), observed from late freshwater stage until one year in seawater, and effects of functional ingredients: a case study from a commercial sized research site in the Arctic region DOI Creative Commons
Jie Wang, Alexander Jaramillo-Torres, Yanxian Li

et al.

Animal Microbiome, Journal Year: 2021, Volume and Issue: 3(1)

Published: Jan. 28, 2021

Abstract Background The importance of the gut microbiota for health and wellbeing is well established humans some land animals. supposedly as important fish, but existing knowledge has many gaps, in particular fish Arctic areas. This study addressed dynamics Atlantic salmon digesta-associated assemblage its associations with host responses from freshwater to seawater life stages under large-scale, commercial conditions region Norway, explored effects functional ingredients. was characterized by 16S rRNA gene sequencing distal intestinal digesta at four time points: 2 weeks before transfer (in May, FW); 4 after June, SW1); November (SW2), April (SW3) following year. Two series diets were fed, varying throughout observation nutrient composition according requirements one without (Ref diet), other ingredients (Test diet). ingredients, i.e. nucleotides, yeast cell walls, prebiotic essential fatty acids, supplemented single or mixtures based on strategies feed company. Results Overall, showed higher microbial richness lactic acid bacteria (LAB) abundance transfer, while Simpson’s diversity decreased period. At SW1, slightly different those FW, dominated genera Lactobacillus Photobacterium . As progressed towards SW2 SW3, Mycoplasma became more prominent, a corresponding decline genus overall bacterial profiles these points clear distinction FW. A significant effect (a mixture walls acids) observed SW2, where Test-fed lower richness, Shannon’s diversity, LAB abundance. multivariate association analysis identified differentially abundant taxa, especially Megasphaera , be significantly associated immune barrier expressions, plasma nutrients. Conclusions profile varied during period, dominating time. biomarkers. Functional modulated an ongrowing stage.

Language: Английский

The Gut Microbiota of Marine Fish DOI Creative Commons
Sian Egerton, Sarah C. Culloty,

Jason Whooley

et al.

Frontiers in Microbiology, Journal Year: 2018, Volume and Issue: 9

Published: May 4, 2018

The body of work relating to the gut microbiota fish is dwarfed by that on humans and mammals. However; it a field has had historical interest grown significantly along with expansion aquaculture industry developments in microbiome research. Research now moving quickly this field. Much recent focus been nutritional manipulation modification meet needs farming, while trying maintain host health welfare. However, diversity amongst means baseline data from wild clear understanding role specific play still lacking. We review here factors shaping marine highlight gaps

Language: Английский

Citations

773

Gut Microbiota and Energy Homeostasis in Fish DOI Creative Commons

Robyn Lisa Butt,

Hélène Volkoff

Frontiers in Endocrinology, Journal Year: 2019, Volume and Issue: 10

Published: Jan. 23, 2019

The microorganisms within the intestinal tract (termed microbiota) have been shown to interact with gut-brain axis, a bidirectional communication system between gut and brain mediated by hormonal, immune neural signals. Through these interactions, microbiota might affect behaviors, including feeding behavior, digestive/absorptive processes (e.g. modulating motility barrier), metabolism, as well response, repercussions on energy homeostasis health of host. To date, research in this field has mostly focused mammals. Studies non-mammalian models such fish may provide novel insights into specific mechanisms involved microbiota-brain-gut axis. This review describes our current knowledge possible effects feeding, digestive processes, growth fish, emphasis influence hormones, environmental factors inter-specific differences.

Language: Английский

Citations

441

Lactic Acid Bacteria in Finfish—An Update DOI Creative Commons
Einar Ringø, Seyed Hossein Hoseinifar, Koushik Ghosh

et al.

Frontiers in Microbiology, Journal Year: 2018, Volume and Issue: 9

Published: Aug. 10, 2018

Fish intestinal mucosal surfaces comprise of a complex and dynamic community microorganisms, which play important roles within the gastrointestinal (GI) tract. Of bacteria colonising GI tract, lactic acid (LAB), are generally considered as favourable due to their abilities stimulating host development, digestive function, maintaining tolerance, immune response provide protection towards bacterial pathogens. In early finfish studies culture-dependent methods were used enumerate population levels tract; members Lactobacillus, Lactococcus, Leuconostoc, Enterococcus, Streptococcus Carnobacterium genera isolated. However, limitations by using culture media, techniques such denaturing gradient gel electrophoresis (DGGE), temporal temperature (TTGE), 16S rRNA clone libraries, MiSeq sequencing genes have been during last decade. These investigations revealed presence Streptococcus, Carnobacterium, Weissella Pediococcus indigenous species. tract warm water fish species, commonly identified, however, rarely identified. Numerous strains LAB isolated from capable producing antibacterial substances against different potential pathogenic well human addition, many ability inhibit growth closely related including carnobacteria, lactobacilli, lactococci, leuconostoc pediococci. be most promising probiotic in aquaculture. During decade increasing number research attempts performed on evaluation properties genus species LAB. Except limited contradictory reports, administered showed beneficial effects performance, reproductive responses disease resistance finfish. This eventually led industrial scale up introduction LAB-based commercial probiotics. Pathogenic Lactococcus detected ascites, kidney, liver, heart spleen several will addressed present review includes impacts aquaculture, possible routes for treatment.

Language: Английский

Citations

341

Probiotic application for sustainable aquaculture DOI
Mahmoud A.O. Dawood, Shunsuke Koshio, Mohamed M. Abdel‐Daim

et al.

Reviews in Aquaculture, Journal Year: 2018, Volume and Issue: 11(3), P. 907 - 924

Published: July 9, 2018

Abstract Aquaculture, which constitutes one of the largest food production sectors in world, is preferably practiced with natural organic products rather than synthetic chemicals or antibiotics. In addition to daunting challenge providing and livelihood exponentially increasing world population, aquaculture industry key ensuring that development based on environmentally sustainable practices, specifically aquafeeds. Terrestrial microorganisms act as defence systems cultured species have been identified main producer for beneficial bacterial candidates. Probiotics recently gained popularity microbes candidates organisms maintain health condition well‐being different aquatic animals. This review aimed understand necessity using probiotics a alternative regulate growth performance, feed utilisation general aquaculture. Also, explanatory discussion about host microbiota its ability produce probiotic strains functionality ameliorate immunity provide interactive effects host‐derived probiotics. By presenting results obtained from previous studies sustain animal's performances, this study condensed current knowledge information future research application

Language: Английский

Citations

330

Role of lactic acid bacteria in flavor development in traditional Chinese fermented foods: A review DOI
Yingying Hu, Lang Zhang,

Rongxin Wen

et al.

Critical Reviews in Food Science and Nutrition, Journal Year: 2020, Volume and Issue: 62(10), P. 2741 - 2755

Published: Dec. 30, 2020

Traditional Chinese fermented foods are favored by consumers due to their unique flavor, texture and nutritional values. A large number of microorganisms participate in the process fermentation, especially lactic acid bacteria (LAB), which present almost all contribute flavor development. The formation is complex involves biochemical conversion various food components. It very important fully understand direct foods. comprehensive link between LAB community traditional reviewed. main mechanisms involved dominated carbohydrate metabolism, proteolysis amino catabolism, lipolysis fatty metabolism. This review highlights some useful novel approaches for enhancement, including application functional starter cultures metabolic engineering, may provide significant advances toward improving a promising market.

Language: Английский

Citations

214

Exploring fish microbial communities to mitigate emerging diseases in aquaculture DOI Open Access
Irene de Bruijn, Yiying Liu, Geert F. Wiegertjes

et al.

FEMS Microbiology Ecology, Journal Year: 2017, Volume and Issue: 94(1)

Published: Nov. 28, 2017

Aquaculture is the fastest growing animal food sector worldwide and expected to further increase feed human population. However, existing (re-)emerging diseases are hampering fish shellfish cultivation yield. For many diseases, vaccination protocols not in place excessive use of antibiotics other chemicals substantial concern. A more sustainable disease control strategy protect from could be achieved by introduction or augmentation beneficial microbes. To establish maintain a 'healthy' microbiome, fundamental understanding diversity temporal-spatial dynamics fish-associated microbial communities their impact on growth health aquatic hosts required. This review describes insights functions bacterial elucidated with next-generation sequencing discusses potential microbes mitigate aquaculture.

Language: Английский

Citations

211

Under control: how a dietary additive can restore the gut microbiome and proteomic profile, and improve disease resilience in a marine teleostean fish fed vegetable diets DOI Creative Commons
M. Carla Piazzon, Josep À. Calduch-Giner, Belén Fouz

et al.

Microbiome, Journal Year: 2017, Volume and Issue: 5(1)

Published: Dec. 1, 2017

The constant increase of aquaculture production and wealthy seafood consumption has forced the industry to explore alternative more sustainable raw aquafeed materials, plant ingredients have been used replace marine feedstuffs in many farmed fish. objective present study was assess whether plant-based diets can induce changes intestinal mucus proteome, gut autochthonous microbiota disease susceptibility fish, these could be reversed by addition sodium butyrate diets. Three different trials were performed using teleostean gilthead sea bream (Sparus aurata) as model. In a first preliminary short-term trial, fish fed with additive (0.8%) supplementing basal diet low vegetable inclusion (D1) then challenged bacteria detect possible effects on survival. second greater levels (D2, D3) long-term effect at lower dose (0.4%) added D3 (D4 diet) tested proteome microbiome. third effectiveness (D4) prevent outcome after an parasite (Enteromyxum leei) challenge tested. results showed that opposed forces driven dietary supplementation diet. On one hand, induced high infection provoked drops growth performance, decreased diversity, dominance Photobacterium genus, well altered mucosal suggesting detrimental function. other slightly cumulative mortality bacterial challenge, avoided retardation parasitized increased diversity higher representation butyrate-producing most diet-induced proteome. This integrative work gives insights pleiotropic restoration homeostasis resilience, multifaceted approach.

Language: Английский

Citations

201

A microbial sea of possibilities: current knowledge and prospects for an improved understanding of the fish microbiome DOI
Thibault P. R. A. Legrand, James W. Wynne,

Laura S. Weyrich

et al.

Reviews in Aquaculture, Journal Year: 2019, Volume and Issue: 12(2), P. 1101 - 1134

Published: Aug. 13, 2019

Abstract The mucosal surfaces of fish represent an important barrier that supports and regulates a diverse array microbial assemblages contributes to the overall health fitness host. For farmed species, knowledge how these host–microbial systems adapt respond various stressors is pivotal for managing health, nutrition optimizing productivity in aquaculture. While our understanding communities factors shape them now suggest balanced microbiota critical healthy functioning fish, mechanisms behind interactions are still poorly understood. Much existing research has focused on characterizing taxonomic diversity different across body (e.g. skin, gills gastrointestinal tract), response changing nutrition, environmental conditions. However, specific functional contributions (or members) remain elusive, especially or diseased fish. Here, we review current their interplay likely involvement with We also seek address identify gaps explore future prospects improving

Language: Английский

Citations

193

Fish Gut Microbiome: Current Approaches and Future Perspectives DOI

Chandni Talwar,

Shekhar Nagar,

Rup Lal

et al.

Indian Journal of Microbiology, Journal Year: 2018, Volume and Issue: 58(4), P. 397 - 414

Published: Aug. 27, 2018

Language: Английский

Citations

180

Sodium butyrate supplementation in high-soybean meal diets for turbot (Scophthalmus maximus L.): Effects on inflammatory status, mucosal barriers and microbiota in the intestine DOI
Yang Liu, Zhichu Chen, Jihong Dai

et al.

Fish & Shellfish Immunology, Journal Year: 2019, Volume and Issue: 88, P. 65 - 75

Published: March 3, 2019

Language: Английский

Citations

161