Animal Microbiome,
Journal Year:
2021,
Volume and Issue:
3(1)
Published: Jan. 28, 2021
Abstract
Background
The
importance
of
the
gut
microbiota
for
health
and
wellbeing
is
well
established
humans
some
land
animals.
supposedly
as
important
fish,
but
existing
knowledge
has
many
gaps,
in
particular
fish
Arctic
areas.
This
study
addressed
dynamics
Atlantic
salmon
digesta-associated
assemblage
its
associations
with
host
responses
from
freshwater
to
seawater
life
stages
under
large-scale,
commercial
conditions
region
Norway,
explored
effects
functional
ingredients.
was
characterized
by
16S
rRNA
gene
sequencing
distal
intestinal
digesta
at
four
time
points:
2
weeks
before
transfer
(in
May,
FW);
4
after
June,
SW1);
November
(SW2),
April
(SW3)
following
year.
Two
series
diets
were
fed,
varying
throughout
observation
nutrient
composition
according
requirements
one
without
(Ref
diet),
other
ingredients
(Test
diet).
ingredients,
i.e.
nucleotides,
yeast
cell
walls,
prebiotic
essential
fatty
acids,
supplemented
single
or
mixtures
based
on
strategies
feed
company.
Results
Overall,
showed
higher
microbial
richness
lactic
acid
bacteria
(LAB)
abundance
transfer,
while
Simpson’s
diversity
decreased
period.
At
SW1,
slightly
different
those
FW,
dominated
genera
Lactobacillus
Photobacterium
.
As
progressed
towards
SW2
SW3,
Mycoplasma
became
more
prominent,
a
corresponding
decline
genus
overall
bacterial
profiles
these
points
clear
distinction
FW.
A
significant
effect
(a
mixture
walls
acids)
observed
SW2,
where
Test-fed
lower
richness,
Shannon’s
diversity,
LAB
abundance.
multivariate
association
analysis
identified
differentially
abundant
taxa,
especially
Megasphaera
,
be
significantly
associated
immune
barrier
expressions,
plasma
nutrients.
Conclusions
profile
varied
during
period,
dominating
time.
biomarkers.
Functional
modulated
an
ongrowing
stage.
Frontiers in Microbiology,
Journal Year:
2018,
Volume and Issue:
9
Published: May 4, 2018
The
body
of
work
relating
to
the
gut
microbiota
fish
is
dwarfed
by
that
on
humans
and
mammals.
However;
it
a
field
has
had
historical
interest
grown
significantly
along
with
expansion
aquaculture
industry
developments
in
microbiome
research.
Research
now
moving
quickly
this
field.
Much
recent
focus
been
nutritional
manipulation
modification
meet
needs
farming,
while
trying
maintain
host
health
welfare.
However,
diversity
amongst
means
baseline
data
from
wild
clear
understanding
role
specific
play
still
lacking.
We
review
here
factors
shaping
marine
highlight
gaps
Frontiers in Endocrinology,
Journal Year:
2019,
Volume and Issue:
10
Published: Jan. 23, 2019
The
microorganisms
within
the
intestinal
tract
(termed
microbiota)
have
been
shown
to
interact
with
gut-brain
axis,
a
bidirectional
communication
system
between
gut
and
brain
mediated
by
hormonal,
immune
neural
signals.
Through
these
interactions,
microbiota
might
affect
behaviors,
including
feeding
behavior,
digestive/absorptive
processes
(e.g.
modulating
motility
barrier),
metabolism,
as
well
response,
repercussions
on
energy
homeostasis
health
of
host.
To
date,
research
in
this
field
has
mostly
focused
mammals.
Studies
non-mammalian
models
such
fish
may
provide
novel
insights
into
specific
mechanisms
involved
microbiota-brain-gut
axis.
This
review
describes
our
current
knowledge
possible
effects
feeding,
digestive
processes,
growth
fish,
emphasis
influence
hormones,
environmental
factors
inter-specific
differences.
Frontiers in Microbiology,
Journal Year:
2018,
Volume and Issue:
9
Published: Aug. 10, 2018
Fish
intestinal
mucosal
surfaces
comprise
of
a
complex
and
dynamic
community
microorganisms,
which
play
important
roles
within
the
gastrointestinal
(GI)
tract.
Of
bacteria
colonising
GI
tract,
lactic
acid
(LAB),
are
generally
considered
as
favourable
due
to
their
abilities
stimulating
host
development,
digestive
function,
maintaining
tolerance,
immune
response
provide
protection
towards
bacterial
pathogens.
In
early
finfish
studies
culture-dependent
methods
were
used
enumerate
population
levels
tract;
members
Lactobacillus,
Lactococcus,
Leuconostoc,
Enterococcus,
Streptococcus
Carnobacterium
genera
isolated.
However,
limitations
by
using
culture
media,
techniques
such
denaturing
gradient
gel
electrophoresis
(DGGE),
temporal
temperature
(TTGE),
16S
rRNA
clone
libraries,
MiSeq
sequencing
genes
have
been
during
last
decade.
These
investigations
revealed
presence
Streptococcus,
Carnobacterium,
Weissella
Pediococcus
indigenous
species.
tract
warm
water
fish
species,
commonly
identified,
however,
rarely
identified.
Numerous
strains
LAB
isolated
from
capable
producing
antibacterial
substances
against
different
potential
pathogenic
well
human
addition,
many
ability
inhibit
growth
closely
related
including
carnobacteria,
lactobacilli,
lactococci,
leuconostoc
pediococci.
be
most
promising
probiotic
in
aquaculture.
During
decade
increasing
number
research
attempts
performed
on
evaluation
properties
genus
species
LAB.
Except
limited
contradictory
reports,
administered
showed
beneficial
effects
performance,
reproductive
responses
disease
resistance
finfish.
This
eventually
led
industrial
scale
up
introduction
LAB-based
commercial
probiotics.
Pathogenic
Lactococcus
detected
ascites,
kidney,
liver,
heart
spleen
several
will
addressed
present
review
includes
impacts
aquaculture,
possible
routes
for
treatment.
Reviews in Aquaculture,
Journal Year:
2018,
Volume and Issue:
11(3), P. 907 - 924
Published: July 9, 2018
Abstract
Aquaculture,
which
constitutes
one
of
the
largest
food
production
sectors
in
world,
is
preferably
practiced
with
natural
organic
products
rather
than
synthetic
chemicals
or
antibiotics.
In
addition
to
daunting
challenge
providing
and
livelihood
exponentially
increasing
world
population,
aquaculture
industry
key
ensuring
that
development
based
on
environmentally
sustainable
practices,
specifically
aquafeeds.
Terrestrial
microorganisms
act
as
defence
systems
cultured
species
have
been
identified
main
producer
for
beneficial
bacterial
candidates.
Probiotics
recently
gained
popularity
microbes
candidates
organisms
maintain
health
condition
well‐being
different
aquatic
animals.
This
review
aimed
understand
necessity
using
probiotics
a
alternative
regulate
growth
performance,
feed
utilisation
general
aquaculture.
Also,
explanatory
discussion
about
host
microbiota
its
ability
produce
probiotic
strains
functionality
ameliorate
immunity
provide
interactive
effects
host‐derived
probiotics.
By
presenting
results
obtained
from
previous
studies
sustain
animal's
performances,
this
study
condensed
current
knowledge
information
future
research
application
Critical Reviews in Food Science and Nutrition,
Journal Year:
2020,
Volume and Issue:
62(10), P. 2741 - 2755
Published: Dec. 30, 2020
Traditional
Chinese
fermented
foods
are
favored
by
consumers
due
to
their
unique
flavor,
texture
and
nutritional
values.
A
large
number
of
microorganisms
participate
in
the
process
fermentation,
especially
lactic
acid
bacteria
(LAB),
which
present
almost
all
contribute
flavor
development.
The
formation
is
complex
involves
biochemical
conversion
various
food
components.
It
very
important
fully
understand
direct
foods.
comprehensive
link
between
LAB
community
traditional
reviewed.
main
mechanisms
involved
dominated
carbohydrate
metabolism,
proteolysis
amino
catabolism,
lipolysis
fatty
metabolism.
This
review
highlights
some
useful
novel
approaches
for
enhancement,
including
application
functional
starter
cultures
metabolic
engineering,
may
provide
significant
advances
toward
improving
a
promising
market.
FEMS Microbiology Ecology,
Journal Year:
2017,
Volume and Issue:
94(1)
Published: Nov. 28, 2017
Aquaculture
is
the
fastest
growing
animal
food
sector
worldwide
and
expected
to
further
increase
feed
human
population.
However,
existing
(re-)emerging
diseases
are
hampering
fish
shellfish
cultivation
yield.
For
many
diseases,
vaccination
protocols
not
in
place
excessive
use
of
antibiotics
other
chemicals
substantial
concern.
A
more
sustainable
disease
control
strategy
protect
from
could
be
achieved
by
introduction
or
augmentation
beneficial
microbes.
To
establish
maintain
a
'healthy'
microbiome,
fundamental
understanding
diversity
temporal-spatial
dynamics
fish-associated
microbial
communities
their
impact
on
growth
health
aquatic
hosts
required.
This
review
describes
insights
functions
bacterial
elucidated
with
next-generation
sequencing
discusses
potential
microbes
mitigate
aquaculture.
Microbiome,
Journal Year:
2017,
Volume and Issue:
5(1)
Published: Dec. 1, 2017
The
constant
increase
of
aquaculture
production
and
wealthy
seafood
consumption
has
forced
the
industry
to
explore
alternative
more
sustainable
raw
aquafeed
materials,
plant
ingredients
have
been
used
replace
marine
feedstuffs
in
many
farmed
fish.
objective
present
study
was
assess
whether
plant-based
diets
can
induce
changes
intestinal
mucus
proteome,
gut
autochthonous
microbiota
disease
susceptibility
fish,
these
could
be
reversed
by
addition
sodium
butyrate
diets.
Three
different
trials
were
performed
using
teleostean
gilthead
sea
bream
(Sparus
aurata)
as
model.
In
a
first
preliminary
short-term
trial,
fish
fed
with
additive
(0.8%)
supplementing
basal
diet
low
vegetable
inclusion
(D1)
then
challenged
bacteria
detect
possible
effects
on
survival.
second
greater
levels
(D2,
D3)
long-term
effect
at
lower
dose
(0.4%)
added
D3
(D4
diet)
tested
proteome
microbiome.
third
effectiveness
(D4)
prevent
outcome
after
an
parasite
(Enteromyxum
leei)
challenge
tested.
results
showed
that
opposed
forces
driven
dietary
supplementation
diet.
On
one
hand,
induced
high
infection
provoked
drops
growth
performance,
decreased
diversity,
dominance
Photobacterium
genus,
well
altered
mucosal
suggesting
detrimental
function.
other
slightly
cumulative
mortality
bacterial
challenge,
avoided
retardation
parasitized
increased
diversity
higher
representation
butyrate-producing
most
diet-induced
proteome.
This
integrative
work
gives
insights
pleiotropic
restoration
homeostasis
resilience,
multifaceted
approach.
Reviews in Aquaculture,
Journal Year:
2019,
Volume and Issue:
12(2), P. 1101 - 1134
Published: Aug. 13, 2019
Abstract
The
mucosal
surfaces
of
fish
represent
an
important
barrier
that
supports
and
regulates
a
diverse
array
microbial
assemblages
contributes
to
the
overall
health
fitness
host.
For
farmed
species,
knowledge
how
these
host–microbial
systems
adapt
respond
various
stressors
is
pivotal
for
managing
health,
nutrition
optimizing
productivity
in
aquaculture.
While
our
understanding
communities
factors
shape
them
now
suggest
balanced
microbiota
critical
healthy
functioning
fish,
mechanisms
behind
interactions
are
still
poorly
understood.
Much
existing
research
has
focused
on
characterizing
taxonomic
diversity
different
across
body
(e.g.
skin,
gills
gastrointestinal
tract),
response
changing
nutrition,
environmental
conditions.
However,
specific
functional
contributions
(or
members)
remain
elusive,
especially
or
diseased
fish.
Here,
we
review
current
their
interplay
likely
involvement
with
We
also
seek
address
identify
gaps
explore
future
prospects
improving