BMC Plant Biology,
Journal Year:
2022,
Volume and Issue:
22(1)
Published: Oct. 22, 2022
Abstract
Background
Sorbus
sensu
stricto
(
s.s.
)
is
a
genus
with
important
economical
values
because
of
its
beautiful
leaves,
and
flowers
especially
the
colorful
fruits.
It
belongs
to
tribe
Maleae
family
Rosaceae,
comprises
about
90
species
mainly
distributed
in
China.
There
on-going
dispute
infrageneric
classification
delimitation
as
are
morphologically
similar.
With
aim
shedding
light
on
circumscription
taxa
within
genus,
phylogenetic
analyses
were
performed
using
29
chloroplast
(cp)
genomes
(16
newly
sequenced)
representing
two
subgenera
eight
sections.
Results
The
16
cp
sequenced
range
between
159,646
bp
160,178
length.
All
samples
examined
22
re-annotated
lato
s.l.
contain
113
unique
genes
19
these
duplicated
inverted
repeat
(IR).
Six
hypervariable
regions
including
trnR
-
atpA
,
petN
psbM
rpl32-trnL
trnH
psbA
trnT
trnL
ndhC-trnV
screened
44–53
SSRs
14–31
dispersed
repeats
identified
potential
molecular
markers.
Phylogenetic
under
ML/BI
indicated
that
polyphyletic,
but
other
five
segregate
genera,
Aria
Chamaemespilus
Cormus
Micromeles
Torminalis
monophyletic.
Two
major
clades
four
sub-clades
resolved
full-support
s.s
.
not
consistent
existing
classification.
subgenera,
subg.
Albocarmesinae
supported
monophyletic
when
S.
tianschanica
transferred
from
hupehensis
var.
paucijuga
respectively.
current
at
sectional
level
by
analysis
genome
phylogeny.
Conclusion
Phylogenomic
useful
for
inferring
relationships
Though
structure
highly
conserved
sequences
used
most
promising
molecule
makers
population
genetics,
studies.
Frontiers in Plant Science,
Journal Year:
2019,
Volume and Issue:
9
Published: Jan. 21, 2019
The
Arabian
Peninsula
is
known
to
have
a
comprehensive
and
rich
endowment
of
unique
genetically
diverse
plant
genetic
resources.
Analysis
conservation
biological
diversity
crucial
issue
the
whole
Peninsula.
rapid
accurate
delimitation
identification
species
analysis
first
critical
step
in
assessment
distribution,
population
abundance
threats
related
particular
target
species.
During
last
two
decades,
classical
strategies
evaluating
variability
such
as
morphology
physiology
been
greatly
complemented
by
phylogenetic,
taxonomic,
breeding
research
molecular
studies.
At
present,
initiatives
are
taking
place
around
world
generate
DNA
barcode
libraries
for
vascular
flora
make
these
data
available
order
better
understand,
conserve
utilize
biodiversity.
number
herbarium
collection-based
evolutionary
genetics
genomics
studies
being
conducted
has
increasing
worldwide.
herbaria
provide
resource
already
preserved
identified
material
well
freshly
collected
samples
from
wild
can
be
used
creating
reference
library
region.
This
review
discusses
main
genomic
techniques
biodiversity
analysis.
Hence,
we
highlight
emphasizing
various
undertaken
during
ten
years
study
Special
emphasis
on
role
barcoding
powerful
tool
provided,
along
with
library.
Comprehensive Reviews in Food Science and Food Safety,
Journal Year:
2021,
Volume and Issue:
20(5), P. 5197 - 5225
Published: Aug. 1, 2021
Abstract
Berries
represent
one
of
the
most
important
and
high‐valued
group
modern‐day
health‐beneficial
“superfoods”
whose
dietary
consumption
has
been
recognized
to
be
beneficial
for
human
health
a
long
time.
In
addition
being
delicious,
berries
are
rich
in
nutrients,
vitamins,
several
bioactive
compounds,
including
carotenoids,
flavonoids,
phenolic
acids,
hydrolysable
tannins.
However,
due
their
high
value,
berry‐based
products
often
subject
fraudulent
adulteration,
commonly
economical
gain,
but
also
unintentionally
misidentification
species.
Deliberate
adulteration
comprises
substitution
high‐value
with
lower
value
counterparts
mislabeling
product
contents.
As
is
deceptive
toward
customers
presents
risk
public
health,
food
authentication
through
different
methods
applied
as
countermeasure.
Although
many
have
developed
terms
fast,
sensitive,
reliable,
low‐cost
analysis
myriad
species,
application
on
still
limited.
The
present
review
provides
an
overview
development
analytical
chemistry
methods,
such
isotope
ratio
analysis,
liquid
gas
chromatography,
spectroscopy,
well
DNA‐based
electronic
sensors,
products.
We
provide
earlier
use
recent
advances
these
discuss
drawbacks
related
application.
Diversity,
Journal Year:
2022,
Volume and Issue:
14(4), P. 262 - 262
Published: March 30, 2022
The
need
for
herbal
medicinal
plants
is
steadily
increasing.
Hence,
the
accurate
identification
of
plant
material
has
become
vital
safe
usage,
avoiding
adulteration,
and
trading.
DNA
barcoding
shown
to
be
a
valuable
molecular
tool
plants,
ensuring
safety
efficacy
materials
therapeutic
significance.
Using
morphological
characters
in
genera
with
closely
related
species,
species
delimitation
often
difficult.
Here,
we
evaluated
capability
nuclear
barcode
ITS2
plastid
barcodes
rbcL
matK
identify
20
medicinally
important
Caryophyllales.
In
our
analysis,
applied
an
integrative
approach
discrimination
using
pairwise
distance-based
unsupervised
operational
taxonomic
unit
“OTU
picking”
methods,
viz.,
ABGD
(Automated
Barcode
Gap
Analysis)
ASAP
(Assemble
Species
by
Automatic
Partitioning).
Along
OTU
picking
Supervised
Machine
Learning
methods
(SML)
were
also
implemented
recognize
divergent
taxa.
Our
results
indicated
that
was
more
successful
distinguishing
between
examined
implying
it
could
used
detect
contamination
adulteration
these
plants.
Moreover,
this
study
suggests
combination
than
one
method
assist
resolution
morphologically
similar
or
BMC Plant Biology,
Journal Year:
2022,
Volume and Issue:
22(1)
Published: Oct. 22, 2022
Abstract
Background
Sorbus
sensu
stricto
(
s.s.
)
is
a
genus
with
important
economical
values
because
of
its
beautiful
leaves,
and
flowers
especially
the
colorful
fruits.
It
belongs
to
tribe
Maleae
family
Rosaceae,
comprises
about
90
species
mainly
distributed
in
China.
There
on-going
dispute
infrageneric
classification
delimitation
as
are
morphologically
similar.
With
aim
shedding
light
on
circumscription
taxa
within
genus,
phylogenetic
analyses
were
performed
using
29
chloroplast
(cp)
genomes
(16
newly
sequenced)
representing
two
subgenera
eight
sections.
Results
The
16
cp
sequenced
range
between
159,646
bp
160,178
length.
All
samples
examined
22
re-annotated
lato
s.l.
contain
113
unique
genes
19
these
duplicated
inverted
repeat
(IR).
Six
hypervariable
regions
including
trnR
-
atpA
,
petN
psbM
rpl32-trnL
trnH
psbA
trnT
trnL
ndhC-trnV
screened
44–53
SSRs
14–31
dispersed
repeats
identified
potential
molecular
markers.
Phylogenetic
under
ML/BI
indicated
that
polyphyletic,
but
other
five
segregate
genera,
Aria
Chamaemespilus
Cormus
Micromeles
Torminalis
monophyletic.
Two
major
clades
four
sub-clades
resolved
full-support
s.s
.
not
consistent
existing
classification.
subgenera,
subg.
Albocarmesinae
supported
monophyletic
when
S.
tianschanica
transferred
from
hupehensis
var.
paucijuga
respectively.
current
at
sectional
level
by
analysis
genome
phylogeny.
Conclusion
Phylogenomic
useful
for
inferring
relationships
Though
structure
highly
conserved
sequences
used
most
promising
molecule
makers
population
genetics,
studies.