Molecular Ecology,
Journal Year:
2019,
Volume and Issue:
28(11), P. 2814 - 2830
Published: April 13, 2019
Patterns
of
genomic
divergence
between
hybridizing
taxa
can
be
heterogeneous
along
the
genome.
Both
differential
introgression
and
local
adaptation
may
contribute
to
this
pattern.
Here,
we
analysed
two
teosinte
subspecies,
Zea
mays
ssp.
parviglumis
mexicana,
test
whether
their
has
occurred
in
face
gene
flow
infer
which
environmental
variables
have
been
important
drivers
ecological
differentiation.
We
generated
9,780
DArTseqTM
SNPs
for
47
populations,
used
an
additional
data
set
containing
33,454
MaizeSNP50
49
populations.
With
these
data,
inferred
features
demographic
history
performed
genome
wide
scans
determine
number
outlier
associated
with
climate
soil
variables.
The
sets
indicate
that
or
maintained
despite
continuous
and/or
secondary
contact.
Most
significant
SNP
associations
were
temperature
phosphorus
concentration
soil.
A
large
proportion
candidate
located
regions
high
differentiation
had
identified
previously
as
putative
inversions.
therefore
propose
teosintes
by
a
process
adaptive
divergence,
inversions
contributing
reduced
locally
adapted
Journal of Systematics and Evolution,
Journal Year:
2014,
Volume and Issue:
52(3), P. 241 - 249
Published: March 24, 2014
Abstract
As
the
highest
and
largest
plateau
in
world,
Qinghai–Tibet
Plateau,
with
its
numerous
endemic
species,
is
one
of
important
alpine
biodiversity
hotspots.
Only
recently
have
evolutionary
histories
underlying
adaptations
these
plants
become
clear,
through
research
mostly
based
on
testable
experiments
analyses.
In
this
issue,
we
collected
a
total
13
papers
related
to
such
aims.
addition,
selected
few
published
highlight
major
findings
recent
past.
We
also
outlined
outlook
direction
future
research.
Frontiers in Plant Science,
Journal Year:
2019,
Volume and Issue:
10
Published: March 18, 2019
Recently,
the
"mountain-geobiodiversity
hypothesis"
(MGH)
was
proposed
as
a
key
concept
for
explaining
high
levels
of
biodiversity
found
in
mountain
regions
Tibeto-Himalayan
region
(THR),
which
comprises
Qinghai–Tibetan
Plateau,
Himalayas,
and
hotspot
known
"Mountains
Southwest
China"
(Hengduan
Mountains
region).
In
addition
to
MGH,
covers
entire
life
span
system,
complementary
concept,
so-called
"flickering
connectivity
system"
(FCS)
recently
period
Quaternary.
The
FCS
focuses
on
dynamics
alpine
ecosystems
caused
by
drastic
climatic
changes
during
past
ca.
2.6
million
years,
emphasizing
that
fragmentation
allopatric
speciation
are
not
sole
factors
accelerated
evolution
species
richness
endemism
mountains.
I
here
provide
review
current
state
knowledge
concerning
geological
uplift,
Quaternary
glaciation,
main
phylogeographic
patterns
("contraction/recolonization",
"platform
refugia/local
expansion",
"microrefugia")
seed
plant
THR.
addition,
make
specific
suggestions
future
avenues
research
should
take
into
account
basis
fundamentals
presented
MGH
FCS,
related
paradigm
shifts.
Journal of Systematics and Evolution,
Journal Year:
2014,
Volume and Issue:
53(1), P. 33 - 46
Published: March 5, 2014
Abstract
Despite
the
absence
of
major
Quaternary
glaciations
in
arid
Northwest
China,
significant
climatic
oscillations
definitely
impacted
evolution
biota
situ
.
Phylogeography
has
grown
as
a
discipline
because
it
provided
explicit
tools
for
study
geographical
subdivision
among
populations.
But
phylogeographical
application
China
begun
to
blossom,
which
evidence
that
aridification
played
role
increase
genetic
diversity
and
species
diversification.
The
time
frame
corresponds
with
Pleistocene
oscillations,
caused
extreme
aridity
expansion
sandy
deserts.
In
Asian
desert
flora
subkingdom
Eurasian
forest
recurrent
scenarios,
identified
by
different
case
studies,
broadly
agree
longstanding
biogeographic,
floristic,
topographic
concepts:
(i)
promoted
diversification
speciation
plants;
(ii)
habitat
fragmentation;
(iii)
Altay–Tianshan
Mountains
included
glacial
refugia
(iv)
population
recolonization
from
occurred
during
postglacial
period;
(v)
plants
persistence
alpine
retreat
climate
oscillations.
We
discuss
main
findings
light
molecular
paleo‐environmental
evidence,
emphasizing
notable
gaps
our
knowledge
outlining
future
research
perspectives
disentangling
evolutionary
history
this
region's
flora.
Molecular Ecology Resources,
Journal Year:
2014,
Volume and Issue:
15(4), P. 932 - 944
Published: Dec. 4, 2014
Abstract
The
Himalaya–Hengduan
Mountains
encompass
two
global
biodiversity
hotspots
with
high
levels
of
and
endemism.
This
area
is
one
the
diversification
centres
genus
Rhododendron
,
which
recognized
as
most
taxonomically
challenging
plant
taxa
due
to
recent
adaptive
radiations
rampant
hybridization.
In
this
study,
four
DNA
barcodes
were
evaluated
on
531
samples
representing
173
species
seven
sections
subgenera
in
a
sampling
density
from
employing
three
analytical
methods.
varied
approaches
(
nj
pwg
blast
)
had
different
identification
powers
performing
best.
With
analysis,
discrimination
rates
for
single
12.21%
25.19%
ITS
<
rbcL
matK
psbA‐trnH
.
Combinations
+
showed
highest
ability
(both
41.98%)
among
all
possible
combinations.
As
barcode,
performed
best
relatively
performance
(25.19%).
Overall,
three‐marker
combination
was
found
be
barcode
identifying
species.
low
discriminative
efficiency
barcoding
(~42%)
may
possibly
attributable
too
sequence
divergences
result
long
generation
time
complex
speciation
patterns
involving
hybridizations.
Taking
morphology,
distribution
range
habitat
into
account,
provided
additional
information
delivered
preliminary
assessment
large
Mountains.
Journal of Biogeography,
Journal Year:
2015,
Volume and Issue:
43(1), P. 31 - 43
Published: Sept. 25, 2015
Abstract
Aim
The
Himalaya‐Hengduan
Mountain
(
HHM
)
biodiversity
hotspot
including
the
‘sky
islands’
of
Southwest
China
harbour
exceptional
plant
diversity
and
endemicity
at
subnival
summits
(most
them
exceeding
4300
m
a.s.l.).
This
study
is
first
using
a
comparative
phylogeographical
framework
to
gain
insights
into
temporal
origin
this
highly
fragmented
flora,
historical
factors
shaping
its
genetic
architecture
as
exemplified
by
four
perennial
herbs.
Location
Mountains,
China.
Methods
Based
on
nuclear
and/or
chloroplast
(cp)
DNA
sequences
for
each
studied
species,
we
performed
AMOVA
mismatch
distributional
analyses
assess
molecular
structure,
demographic
history
in
relation
current
last
glacial
distributions
ecological
niche
modelling
ENM
).
Time‐calibrated
phylogenetic
reconstructions
cp
data
were
used
infer
species‐specific
stem
crown
ages.
Results
Our
time
estimates
suggest
that
these
species
originated
during
Late
Pliocene
or
early‐to‐mid
Pleistocene,
whereas
their
onset
diversification
generally
falls
mid‐Pleistocene.
All
exhibited
island‐like
population
structures,
with
all
showing
signatures
recent
growth
spatial
expansion
based
.
By
contrast,
indicated
broad‐scale
remained
fairly
stable
over
glacial/post‐glacial
cycle.
Main
conclusions
likely
associated
tectonic
changes
region,
while
near‐simultaneous
‘Naynayxungla
Glaciation’
(0.72–0.50
Ma)
could
reflect
initial
divergence
through
climate‐induced
habitat
fragmentation.
Despite
rather
history,
geographical
isolation
localized
range
expansion/contractions
resulted
significant
structure
differentiation
Overall,
present
results
are
strongly
indicative
shared
evolutionary
histories
structures
among
plants
from
island
system’
region.
Nature Communications,
Journal Year:
2019,
Volume and Issue:
10(1)
Published: March 6, 2019
Abstract
In
the
lead-up
to
Cretaceous/Paleogene
mass
extinction,
dinosaur
diversity
is
argued
have
been
either
in
long-term
decline,
or
thriving
until
their
sudden
demise.
The
latest
Cretaceous
(Campanian–Maastrichtian
[83–66
Ma])
of
North
America
provides
best
record
address
this
debate,
but
even
here
reconstructions
are
biased
by
uneven
sampling.
Here
we
combine
fossil
occurrences
with
climatic
and
environmental
modelling
quantify
American
habitat.
Ecological
niche
shows
a
Campanian-to-Maastrichtian
habitability
decrease
areas
present-day
rock-outcrop.
However,
continent-wide
projection
demonstrates
habitat
stability,
increase,
that
not
preserved.
This
reduction
spatial
sampling
window
resulted
from
formation
proto-Rocky
Mountains
sea-level
regression.
We
suggest
Maastrichtian
therefore
likely
be
underestimated,
apparent
decline
product
bias,
due
climatically-driven
as
previously
hypothesised.
New Phytologist,
Journal Year:
2015,
Volume and Issue:
206(2), P. 852 - 867
Published: Jan. 15, 2015
Summary
Warm‐temperate
evergreen
(
WTE
)
forest
represents
the
typical
vegetation
type
of
subtropical
China,
but
how
its
component
species
responded
to
past
environmental
change
remains
largely
unknown.
Here,
we
reconstruct
evolutionary
history
Tetrastigma
hemsleyanum
,
an
herbaceous
climber
restricted
forest.
Twenty
populations
were
genotyped
using
chloroplast
DNA
sequences
and
nuclear
microsatellite
loci
assess
population
structure
diversity,
supplemented
by
phylogenetic
dating,
ancestral
area
reconstructions
ecological
niche
modeling
ENM
distributions
during
Last
Glacial
Maximum
LGM
at
present.
Lineages
in
Southwest
vs
Central‐South‐East
China
diverged
through
climate/tectonic‐induced
vicariance
southern
range
early
Pliocene.
Long‐term
stability
contrasts
with
latitudinal
shifts
region
early‐to‐mid‐Pleistocene.
Genetic
data
strongly
suggest
refugial
persistence
situ
.
Pre‐Quaternary
changes
appear
have
had
a
persistent
influence
on
genetic
this
species.
Our
findings
relative
demographic
biome
over
last
glacial–interglacial
cycle,
contrast
palaeobiome
showing
that
retreated
areas
today's
tropical
South
Scientific Reports,
Journal Year:
2018,
Volume and Issue:
8(1)
Published: April 11, 2018
Climate
change
profoundly
influences
species
distributions.
These
effects
are
evident
in
poleward
latitudinal
range
shifts
for
many
taxa,
and
upward
altitudinal
alpine
species,
that
resulted
from
increased
annual
global
temperatures
since
the
Last
Glacial
Maximum
(LGM,
ca.
22,000
BP).
For
latter,
ultimate
consequence
of
may
be
extinction
as
highest
ecosystems
can
migrate
no
further,
a
phenomenon
often
characterized
"nowhere
to
go".
To
predict
responses
climate
plants
on
Qinghai-Tibetan
Plateau
(QTP),
we
used
ecological
niche
modelling
(ENM)
estimate
14
Rhodiola
beginning
with
Interglacial
(ca.
120,000-140,000
BP)
through
2050.
Distributions
appear
shaped
by
temperature-related
variables.
The
southeastern
QTP,
especially
Hengduan
Mountains,
were
origin
center
distribution
Rhodiola,
also
served
refugia
during
LGM.
Under
future
scenario
2050,
might
have
northward,
but
would
expand
their
ranges
contra
prediction
go"
hypothesis,
caused
appearance
additional
potential
habitat
concomitant
reduction
permafrost
warming.
National Science Review,
Journal Year:
2020,
Volume and Issue:
8(9)
Published: Oct. 20, 2020
The
Himalaya
are
among
the
youngest
and
highest
mountains
in
world,
but
exact
timing
of
their
uplift
origins
biodiversity
still
debate.
Himalayan
region
is
a
relatively
small
area
with
exceptional
diversity
endemism.
One
common
hypothesis
to
explain
rich
montane
uplift-driven
diversification-that
orogeny
creates
conditions
favoring
rapid
Ecology and Evolution,
Journal Year:
2021,
Volume and Issue:
11(16), P. 10794 - 10812
Published: July 17, 2021
Mountain
ecosystems
support
a
significant
one-third
of
all
terrestrial
biodiversity,
but
our
understanding
the
spatiotemporal
maintenance
this
high
biodiversity
remains
poor,
or
at
best
controversial.
The
Himalaya
hosts
complex
mountain
ecosystem
with
topographic
and
climatic
heterogeneity
harbors
one
world's
richest
floras.
species
endemism,
together
increasing
anthropogenic
threats,
has
qualified
as
most
global
hotspots.
complexity
makes
it
an
ideal
natural
laboratory
for
studying
mechanisms
floral
exchange,
diversification,
distributions.
Here,
we
review
literature
pertaining
to
in
order
generate
concise
synthesis
origin,
distribution,
climate
change
responses
Himalayan
flora.
We
found
that
supports
rich
Hengduan
Mountains
supplied
majority
elements,
which
subsequently
diversified
from
late
Miocene
onward,
create
today's
relatively
endemicity
Himalaya.
Further,
uncover
links
between
diversification
joint
effect
geological
upheavals
There
is
marked
variance
regarding
dispersal,
elevational
gradients,
impact
among
plant
Himalaya,
highlights
some
general
trends
recent
advances
on
these
aspects.
Finally,
provide
recommendations
conservation
planning
future
research.
Our
work
could
be
useful
guiding
research
important
will
also
new
insights
into
underpinning
other
systems.