Unlocking the bacterial and fungal communities assemblages of sugarcane microbiome DOI Creative Commons
Rafael Soares Correa de Souza,

Vagner Katsumi Okura,

Jaderson Silveira Leite Armanhi

et al.

Scientific Reports, Journal Year: 2016, Volume and Issue: 6(1)

Published: June 30, 2016

Abstract Plant microbiome and its manipulation herald a new era for plant biotechnology with the potential to benefit sustainable crop production. However, studies evaluating diversity, structure impact of microbiota in economic important crops are still rare. Here we describe comprehensive inventory assemblage bacterial fungal communities associated sugarcane. Our analysis identified 23,811 OTUs an unexpected 11,727 inhabiting endophytic exophytic compartments roots, shoots leaves. These originate primarily from native soil around plants colonize organs distinct patterns. The sample type is primary driver community organ compartment plays major role assemblage. We core composed less than 20% total microbial richness but accounting over 90% relative abundance. roots showed 89 families, 19 which accounted 44% Stalks dominated by groups yeasts that represent 12% described here comprise whose biological underlies traits growth fermentative processes.

Language: Английский

Ecological patterns of seed microbiome diversity, transmission, and assembly DOI Creative Commons
Ashley Shade, Marie‐Agnès Jacques, Matthieu Barret

et al.

Current Opinion in Microbiology, Journal Year: 2017, Volume and Issue: 37, P. 15 - 22

Published: April 21, 2017

Language: Английский

Citations

367
The Populus holobiont: dissecting the effects of plant niches and genotype on the microbiome DOI Creative Commons
Melissa A. Cregger, Allison M. Veach,

Zamin K. Yang

et al.

Microbiome, Journal Year: 2018, Volume and Issue: 6(1)

Published: Feb. 12, 2018

Microorganisms serve important functions within numerous eukaryotic host organisms. An understanding of the variation in plant niche-level microbiome, from rhizosphere soils to canopies, is imperative gain a better how both structural and functional processes microbiomes impact health overall holobiome. Using Populus trees as model ecosystem, we characterized archaeal/bacterial fungal microbiome across 30 different tissue-level niches replicated deltoides hybrid trichocarpa × individuals using 16S ITS2 rRNA gene analyses. Our analyses indicate that varied primarily broader habitat classes (leaves, stems, roots, soils) regardless genotype, except for communities leaf niches, which were greatly impacted by genotype. Differences between tree genotypes are evident elevated presence two potential pathogens, Marssonina brunnea Septoria sp., on P. may turn be contributing divergence composition. Archaeal/bacterial diversity increased leaves, stem, root, soil habitats, whereas was greatest stems soils. This study provides holistic structure bioenergy relevant host, one most complete any plant. As such, it constitutes detailed atlas or map further hypothesis testing significance individual microbial taxa specific habitats baseline comparisons other species.

Language: Английский

Citations

357
Plant microbiome–an account of the factors that shape community composition and diversity DOI Creative Commons
Khondoker M. G. Dastogeer,

Farzana Haque Tumpa,

Afruja Sultana

et al.

Current Plant Biology, Journal Year: 2020, Volume and Issue: 23, P. 100161 - 100161

Published: July 1, 2020

Plants live in association with diverse microorganisms, collectively called the microbiome. These microbes either inside (endosphere) or outside (episphere) of plant tissues. Microbes play important roles ecology and physiology plants. Significant progress has been made revealing structure dynamics microbiome last few years. Various factors related to host, as well environment influence community composition diversity This review aimed provide a general account (host, microbe environment) that drive microbial plant. First, we gave an overview aboveground belowground microbiomes. Next, discussed which host are involved variation plants followed by importance microbe-microbe interactions elements structuring

Language: Английский

Citations

348
Soil pH correlates with the co-occurrence and assemblage process of diazotrophic communities in rhizosphere and bulk soils of wheat fields DOI
Kunkun Fan, Pamela Weisenhorn, Jack A. Gilbert

et al.

Soil Biology and Biochemistry, Journal Year: 2018, Volume and Issue: 121, P. 185 - 192

Published: March 20, 2018

Language: Английский

Citations

325
Unlocking the bacterial and fungal communities assemblages of sugarcane microbiome DOI Creative Commons
Rafael Soares Correa de Souza,

Vagner Katsumi Okura,

Jaderson Silveira Leite Armanhi

et al.

Scientific Reports, Journal Year: 2016, Volume and Issue: 6(1)

Published: June 30, 2016

Abstract Plant microbiome and its manipulation herald a new era for plant biotechnology with the potential to benefit sustainable crop production. However, studies evaluating diversity, structure impact of microbiota in economic important crops are still rare. Here we describe comprehensive inventory assemblage bacterial fungal communities associated sugarcane. Our analysis identified 23,811 OTUs an unexpected 11,727 inhabiting endophytic exophytic compartments roots, shoots leaves. These originate primarily from native soil around plants colonize organs distinct patterns. The sample type is primary driver community organ compartment plays major role assemblage. We core composed less than 20% total microbial richness but accounting over 90% relative abundance. roots showed 89 families, 19 which accounted 44% Stalks dominated by groups yeasts that represent 12% described here comprise whose biological underlies traits growth fermentative processes.

Language: Английский

Citations

313