Back to the future – 20 years of progress and developments in photonic microscopy and biological imaging DOI
Marie Erard, Cyril Favard, Luke D. Lavis

et al.

Journal of Cell Science, Journal Year: 2024, Volume and Issue: 137(20)

Published: Oct. 15, 2024

In 2023, the ImaBio consortium (imabio-cnrs.fr), an interdisciplinary life microscopy research group at Centre National de la Recherche Scientifique, celebrated its 20th anniversary. contributes to biological imaging community through organization of MiFoBio conferences, which are conferences featuring lectures and hands-on workshops that attract specialists from around world. provide with opportunity reflect on evolution field, 2023 event offered retrospective talks discussing past 20 years topics in microscopy, including multicellular assemblies, image analysis, quantification molecular motions interactions within cells, advancements fluorescent labels, laser technology for multiphoton label-free thick samples. this Perspective, we compile summaries these presentations overviewing a specific area each concludes brief look towards future. The full available YouTube channel (youtube.com/@gdrimabio5724).

Language: Английский

Molecular Spies in Action: Genetically Encoded Fluorescent Biosensors Light up Cellular Signals DOI Creative Commons
Anneliese M. M. Gest, Ayse Z. Sahan, Yanghao Zhong

et al.

Chemical Reviews, Journal Year: 2024, Volume and Issue: 124(22), P. 12573 - 12660

Published: Nov. 13, 2024

Cellular function is controlled through intricate networks of signals, which lead to the myriad pathways governing cell fate. Fluorescent biosensors have enabled study these signaling in living systems across temporal and spatial scales. Over years there has been an explosion number fluorescent biosensors, as they become available for numerous targets, utilized spectral space, suited various imaging techniques. To guide users this extensive biosensor landscape, we discuss critical aspects proteins consideration development, smart tagging strategies, historical recent types, grouped by target, with a focus on design applications sensors systems.

Language: Английский

Citations

11

Chloroplast thiol redox dynamics through the lens of genetically encoded biosensors DOI
Stefanie J. Müller‐Schüssele

Journal of Experimental Botany, Journal Year: 2024, Volume and Issue: 75(17), P. 5312 - 5324

Published: Feb. 22, 2024

Abstract Chloroplasts fix carbon by using light energy and have evolved a complex redox network that supports plastid functions (i) protecting against reactive oxygen species (ii) metabolic regulation in response to environmental conditions. In thioredoxin- glutathione/glutaredoxin-dependent cascades, protein cysteinyl steady states are set varying oxidation reduction rates. The specificity interplay of these different redox-active proteins still under investigation, for example understand how plants cope with adverse conditions acclimation. Genetically encoded biosensors distinct can be targeted subcellular compartments such as the chloroplast stroma, enabling vivo real-time measurements physiological parameters at scales. These data provided unique insights into dynamic behaviours redox-responsive several levels known cascades. This review summarizes current applications biosensor types well dynamics states, an emphasis on responses.

Language: Английский

Citations

3

Advancing Biosensing through Super-Resolution Fluorescence Microscopy DOI

Ga‐eun Go,

Doory Kim

Biosensors and Bioelectronics, Journal Year: 2025, Volume and Issue: unknown, P. 117374 - 117374

Published: March 1, 2025

Language: Английский

Citations

0

Design principles of gene circuits for longevity DOI Creative Commons
Pere Godoy, Nan Hao

Trends in Cell Biology, Journal Year: 2025, Volume and Issue: unknown

Published: March 1, 2025

HighlightsSystems-level approaches complement static insights by revealing how gene regulatory networks (GRNs) dynamically regulate cellular aging and promote longevity.Observing the dynamics of heme biosynthesis nucleolar silencing in budding yeast reveals distinct modes, synthetic biology can significantly extend lifespan.Negative feedback loops aging-related processes such as proteostasis, energy metabolism, DNA damage response pathways maintain homeostasis counteract deterioration.Synthetic offers potential interventions to reinforce circuits, thereby mitigating age-related diseases promoting healthy aging.AbstractAging is a dynamic process that driven disruption homeostatic (GRNs). Traditional studies often focus on individual genes, but understanding their interplay key unraveling mechanisms aging. This review explores circuits influence longevity highlights role maintaining balance. The SIR2–HAP circuit serves model explore mutual inhibition between influences trajectories engineering stable fixed points or oscillations within these lifespan. Feedback crucial for are also reviewed, we highlight destabilization accelerates By leveraging systems biology, strategies proposed may stabilize single cells, enhancing resilience damage.

Language: Английский

Citations

0

Proteomic Sensors for Quantitative, Multiplexed and Spatial Monitoring of Kinase Signaling DOI Creative Commons
Marcus B. Smolka,

Will Comstock,

M.V.A.S. Navarro

et al.

Research Square (Research Square), Journal Year: 2025, Volume and Issue: unknown

Published: March 27, 2025

Understanding kinase action requires precise quantitative measurements of their activity in vivo . In addition, the ability to capture spatial information is crucial deconvolute complex signaling networks, interrogate multifaceted actions, and assess drug effects or genetic perturbations. Here we developed a proteomic sensor platform (ProKAS) for analysis using mass spectrometry. ProKAS based on tandem array peptide sensors with amino acid barcodes that allow multiplexed spatial, kinetic, screening applications. We engineered module simultaneously monitor activities DNA damage response kinases ATR, ATM, CHK1 genotoxic drugs, while also uncovering differences between these responses nucleus, cytosol, replication factories. Furthermore, an silico approach rational design specific substrate peptides expandable other kinases. Overall, novel versatile system systematically spatially probing cells.

Language: Английский

Citations

0

Advancing Single-Molecule Biophysics: Next-Generation Organic Fluorophores with Tailored Labeling Strategies DOI Creative Commons
Lei Zhang,

Dongwen Shen,

Jia-Zhen Yang

et al.

Chemical & Biomedical Imaging, Journal Year: 2025, Volume and Issue: unknown

Published: April 1, 2025

Language: Английский

Citations

0

Mitochondria-organelle crosstalk in establishing compartmentalized metabolic homeostasis DOI
Brandon Chen, Costas A. Lyssiotis, Yatrik M. Shah

et al.

Molecular Cell, Journal Year: 2025, Volume and Issue: 85(8), P. 1487 - 1508

Published: April 1, 2025

Language: Английский

Citations

0

Coenzyme Q10 protects keratinocytes against oxidation-induced energy stress as revealed by spatiotemporal analysis of cell energetics DOI Creative Commons
Roland Abi Nahed,

Ali Hussein,

Cécile Cottet‐Rousselle

et al.

Scientific Reports, Journal Year: 2025, Volume and Issue: 15(1)

Published: April 25, 2025

Coenzyme Q10 (Q10) plays a critical role in cellular energy conversion within the mitochondrial respiratory chain and offers protective effects against oxidative metabolic stress. In this study, we investigated impact of on spatio-temporal patterns energetics keratinocyte-derived HaCaT cells, utilizing genetically-encoded FRET sensor AMPfret. Engineered from AMP-activated protein kinase (AMPK), leverages endogenous affinities that evolved to detect stress, specifically decreases ATP/ADP ATP/AMP ratios pose threat cell survival. We successfully established cells stably expressing AMPfret, validated their functionality by inducing stress with 2-deoxy-D-glucose, demonstrated Q10, together high glucose conditions culture, can enhance compared low controls. then employed AMPfret analyze response keratinocytes Luperox (tert-butyl peroxide), potent organic prooxidant, presence varying intracellular levels Q10. Preloading was protective, slowing speed reducing extend response. contrast, preincubation Simvastatin, an inhibitor mevalonate biosynthesis pathway, depleted levels, accelerated onset led early death as Under all conditions, revealed cell-to-cell heterogeneity at baseline Luperox. Overall, tracking changes state time single-cell level allows further insights into beneficial enhancing bioenergetics skin potential AMPK mediating responses altered levels.

Language: Английский

Citations

0

Simultaneous Quantification of Intracellular pH and Lactate at the Single-Cell Level Using a Genetically Encoded Fluorescence Lifetime Biosensor DOI
Huangmei Zhou, Yejun Zou,

Yike Song

et al.

Sensors and Actuators B Chemical, Journal Year: 2025, Volume and Issue: unknown, P. 137979 - 137979

Published: May 1, 2025

Language: Английский

Citations

0

Chemical biology approaches to resolve the subcellular GPCR signaling landscape DOI
Andreas Böck, Braden T. Lobingier, Miriam Stoeber

et al.

Nature Chemical Biology, Journal Year: 2025, Volume and Issue: unknown

Published: June 2, 2025

Language: Английский

Citations

0