Microbial Community Resilience across Ecosystems and Multiple Disturbances DOI
Laurent Philippot, Bryan S. Griffiths, Silke Langenheder

et al.

Microbiology and Molecular Biology Reviews, Journal Year: 2021, Volume and Issue: 85(2)

Published: March 30, 2021

The ability of ecosystems to withstand disturbances and maintain their functions is being increasingly tested as rates change intensify due climate other human activities. Microorganisms are crucial players underpinning ecosystem functions, the recovery microbial communities from therefore a key part complex processes determining fate functioning. However, despite global environmental consisting numerous pressures, it unclear controversial how multiple affect community stability what consequences this has for functions. This particularly case those or compounded that occur more frequently than normal time. aim review provide an overview mechanisms can govern responses microbes across aquatic terrestrial ecosystems. We first summarize discuss properties influence resilience in soil biomes determine whether there generally applicable principles. Following, we focus on interactions resulting inherent characteristics disturbances, such nature disturbance, timing, chronology lead nonadditive effects modulating response microorganisms.

Language: Английский

Stochastic Community Assembly: Does It Matter in Microbial Ecology? DOI Open Access
Jizhong Zhou, Daliang Ning

Microbiology and Molecular Biology Reviews, Journal Year: 2017, Volume and Issue: 81(4)

Published: Oct. 12, 2017

Understanding the mechanisms controlling community diversity, functions, succession, and biogeography is a central, but poorly understood, topic in ecology, particularly microbial ecology. Although stochastic processes are believed to play nonnegligible roles shaping structure, their importance relative deterministic hotly debated. The of ecological stochasticity structure far less appreciated. Some main reasons for such heavy debates difficulty defining diverse methods used delineating stochasticity. Here, we provide critical review synthesis data from most recent studies on assembly We then describe both components embedded various processes, including selection, dispersal, diversification, drift. also different approaches inferring observational diversity patterns highlight experimental communities. In addition, research challenges, gaps, future directions research.

Language: Английский

Citations

1958
Core microbiomes for sustainable agroecosystems DOI
Hirokazu Toju, Kabir Peay, Masato Yamamichi

et al.

Nature Plants, Journal Year: 2018, Volume and Issue: 4(5), P. 247 - 257

Published: April 24, 2018

Language: Английский

Citations

797
Community structure follows simple assembly rules in microbial microcosms DOI
Jonathan Friedman,

Logan M. Higgins,

Jeff Gore

et al.

Nature Ecology & Evolution, Journal Year: 2017, Volume and Issue: 1(5)

Published: March 27, 2017

Language: Английский

Citations

522
Ecology and Evolution of Plant Microbiomes DOI Open Access
Viviane Cordovez, Francisco Dini‐Andreote, Víctor J. Carrión

et al.

Annual Review of Microbiology, Journal Year: 2019, Volume and Issue: 73(1), P. 69 - 88

Published: May 15, 2019

Microorganisms colonizing plant surfaces and internal tissues provide a number of life-support functions for their host. Despite increasing recognition the vast functional capabilities microbiome, our understanding ecology evolution taxonomically hyperdiverse microbial communities is limited. Here, we review current knowledge genotypic phenotypic traits as well allogenic autogenic factors that shape microbiome composition functions. We give specific emphasis to impact domestication on assembly how insights into microbiomes wild relatives native habitats can contribute reinstate or enrich microorganisms with beneficial effects growth, development, health. Finally, introduce new concepts perspectives in research, particular community theory mechanistic framework unravel interplay distinct ecological processes-i.e., selection, dispersal, drift, diversification-that structure microbiome.

Language: Английский

Citations

518
Establishing Causality: Opportunities of Synthetic Communities for Plant Microbiome Research DOI Creative Commons
Julia A. Vorholt, Christine Vogel,

Charlotte I. Carlström

et al.

Cell Host & Microbe, Journal Year: 2017, Volume and Issue: 22(2), P. 142 - 155

Published: Aug. 1, 2017

Language: Английский

Citations

512
Habitat fragmentation and biodiversity conservation: key findings and future challenges DOI Open Access
Maxwell C. Wilson, Xiaoyong Chen, Richard T. Corlett

et al.

Landscape Ecology, Journal Year: 2015, Volume and Issue: 31(2), P. 219 - 227

Published: Nov. 20, 2015

Language: Английский

Citations

500
Microbial interactions lead to rapid micro-scale successions on model marine particles DOI Creative Commons
Manoshi Sen Datta,

Elżbieta Śliwerska,

Jeff Gore

et al.

Nature Communications, Journal Year: 2016, Volume and Issue: 7(1)

Published: June 17, 2016

Abstract In the ocean, organic particles harbour diverse bacterial communities, which collectively digest and recycle essential nutrients. Traits like motility exo-enzyme production allow individual taxa to colonize exploit particle resources, but it remains unclear how community dynamics emerge from these traits. Here we track taxon trait of bacteria attached model marine demonstrate that particle-attached communities undergo rapid, reproducible successions driven by ecological interactions. Motile, particle-degrading are selected for during early successional stages. However, this selective pressure is later relaxed when secondary consumers invade, unable use resource but, instead, rely on carbon primary degraders. This creates a trophic chain shifts metabolism away substrate. These results suggest may shape in ocean rapid community-wide metabolic could limit rates degradation.

Language: Английский

Citations

393
Ecological patterns of seed microbiome diversity, transmission, and assembly DOI Creative Commons
Ashley Shade, Marie‐Agnès Jacques, Matthieu Barret

et al.

Current Opinion in Microbiology, Journal Year: 2017, Volume and Issue: 37, P. 15 - 22

Published: April 21, 2017

Language: Английский

Citations

367
Ecological and evolutionary perspectives on community assembly DOI

Gary G. Mittelbach,

Douglas W. Schemske

Trends in Ecology & Evolution, Journal Year: 2015, Volume and Issue: 30(5), P. 241 - 247

Published: April 22, 2015

Language: Английский

Citations

337
Microbial interactions and community assembly at microscales DOI Creative Commons
Otto X. Cordero, Manoshi Sen Datta

Current Opinion in Microbiology, Journal Year: 2016, Volume and Issue: 31, P. 227 - 234

Published: May 25, 2016

In most environments, microbial interactions take place within microscale cell aggregates. At the scale of these aggregates (∼100 μm), are likely to be dominant driver population structure and dynamics. particular, organisms that exploit interspecific increase ecological performance often co-aggregate. Conversely, antagonize each other will tend spatially segregate, creating distinct micro-communities increased diversity at larger length scales. We argue that, in order understand role biological play community function, it is necessary study spatial organization with enough throughput measure statistical associations between taxa possible alternative states. conclude by proposing strategies tackle this challenge.

Language: Английский

Citations

337