
One Earth, Journal Year: 2020, Volume and Issue: 2(4), P. 349 - 360
Published: April 1, 2020
Soil stores more carbon (C) than all vegetation and the atmosphere combined. C stocks are broadly shaped by temperature, moisture, soil physical characteristics, vegetation, microbial-mediated metabolic processes. The efficiency with which microorganisms use regulates balance between storage in atmosphere. In this review, we discuss how microbial physiology community assembly processes determine growth rate and, turn, organic cycling through lens of ecology. We introduce a conceptual framework cataloging life history (i.e., rate, resource acquisition, stress tolerance) traits competition, facilitation, dispersal) that correspond different efficiencies. also compare dominant mycorrhizal fungal type affects efficiency. propose further development inclusion specific parameters microbial-explicit Earth system models needed for accurately predicting responses to global change. Globally, top two meters store ∼2,500 Pg (SOC),1Köchy M. Hiederer R. Freibauer A. Global distribution carbon—Part 1: masses frequency distributions SOC tropics, permafrost regions, wetlands, world.Soil. 2015; 351-365Crossref Scopus (107) Google Scholar whereas only holds ∼600 (C).2Ciais P. Sabine C. Bala G. Bopp L. Brovkin V. Canadell J. Chhabra DeFries Galloway Heimann et al.Carbon other biogeochemical cycles.in: Stocker T.F. Qin D. Plattner G.K. Tignor Allen S.K. Boschung Nauels Xia Y. Bex Midgley P.M. Climate Change 2013: Physical Science Basis Contribution Working Group I Fifth Assessment Report Intergovernmental Panel on Change. Cambridge University Press, 465-570Google Small changes can therefore profoundly affect atmospheric CO2 concentrations Earth's climate.2Ciais Models developed using results from soil-warming experiments predict warming will stimulate release (mostly as CO2) generate positive feedback loop could exacerbate warming.3Melillo J.M. Frey S.D. DeAngelis K.M. Werner W.J. Bernard M.J. Bowles F.P. Pold Knorr M.A. Grandy A.S. Long-term pattern magnitude climate world.Science. 2017; 358: 101-105Crossref PubMed (111) Each year, releases 60 into atmosphere, over half originates metabolism.2Ciais Scholar,4Raich J.W. Schlesinger W.H. dioxide flux respiration its relationship climate.Tellus B. 1992; 44: 81-99Crossref Total has been increasing last decades sharply indicates due is already taking place globally.5Bond-Lamberty Bailey V.L. Chen Gough C.M. Vargas Globally rising heterotrophic recent decades.Nature. 2018; 560: 80-83Crossref (63) Despite direct mediation microbes cycling, communities an overlooked component nearly major C-cycling predictions.6Sulman B.N. Moore J.A.M. Abramoff Averill Kivlin S. Georgiou K. Sridhar Hartman M.D. Wang Wieder W.R. al.Multiple underscore large uncertainty dynamics.Biogeochemistry. 141: 109-123Crossref (28) part, because represent staggering levels diversity (billions species)7Locey K.J. Lennon J.T. Scaling laws diversity.Proc. Natl. Acad. Sci. USA. 2016; 113: 5970Crossref Scholar,8Larsen B.B. Miller E.C. Rhodes M.K. Wiens J.J. Inordinate fondness multiplied redistributed: number species earth new pie life.Q. Rev. Biol. 92: 229-265Crossref (48) part lively open interdisciplinary debate.6Sulman govern matter (SOM) pools. each handful there thousands species,7Locey their death drive formation SOC.9Kallenbach Direct evidence microbial-derived ecophysiological controls.Nat. Commun. 7: 13630Crossref (228) When metabolize inputs leaf litter, rhizodeposits, amendments, or pre-existing SOC), proportion allocated growth, resulting biomass contributes (as SOM) when exuded upon cell death.10Geyer Kyker-Snowman E. Microbial efficiency: accounting population, community, ecosystem-scale controls fate metabolized matter.Biogeochemistry. 127: 173-188Crossref (81) Even though accumulates years11Li Evanylo effects long-term application amendments accumulation.Soil Water Manage. Conserv. 2013; 77: 964-973Google millennia,12Schlesinger Evidence chronosequence studies low carbon-storage potential soils.Nature. 1990; 348: 232-234Crossref (537) compounds stabilize immediate introduction13Creamer C.A. Foster A.L. Lawrence McFarland Schulz Waldrop M.P. Mineralogy dictates initial mechanism necromass association.Geochim. Cosmochim. Acta. 2019; 260: 161-176Crossref (0) advance sequestration.9Kallenbach Scholar,14Kravchenko A.N. Guber A.K. Razavi B.S. Koestel Quigely M.Y. Robertson G.P. Kuzyakov spatial footprint driver stabilization.Nat. 10: 3121Crossref (8) Since most SOM form small, charged compounds, it adsorbs active sites clays metal precipitates.15Jilling Keiluweit Contosta A.R. Schimel Schnecker Smith R.G. Tiemann Minerals rhizosphere: mediators nitrogen availability plants microbes.Biogeochemistry. 139: 103-122Crossref (27) Scholar,16Liang Amelung W. Lehmann Kästner Quantitative assessment contribution matter.Glob. 25: 3578-3590Crossref (5) These organo-mineral complexes remain bound millennia thus critical sequestration.17Lal Negassa Lorenz Carbon sequestration soil.Curr. Opin. Environ. Sustain. 15: 79-86Crossref (90) Rate key cycle, but regulated composition. Environmental filters including temperature precipitation,18Miyamoto Terashima Nara Temperature niche position breadth ectomycorrhizal fungi: reduced under predicted nested structure.Glob. 24: 5724-5737Crossref (3) physiochemical properties,19Lauber C.L. Strickland M.S. Bradford Fierer N. influence properties structure bacterial across land-use types.Soil Biochem. 2008; 40: 2407-2415Crossref (790) Scholar,20Glassman S.I. I.J. Bruns T.D. filtering pH nutrients drives fungi at fine scales.Mol. Ecol. 26: 6960-6973Crossref (50) plant communities21Van Der Linde Suz L.M. Orme C.D.L. Cox F. Andreae H. Asi Atkinson Benham Carroll Cools al.Environment host large-scale fungi.Nature. 558: 243-248Crossref (51) Scholar,22Anthony Stinson Trautwig Coates-Connor Fungal do not recover after removing invasive Alliaria petiolata (garlic mustard).Biol. Invasions. 21: 3085-3099Crossref select particular traits23Moeller H.V. Peay K.G. Fukami T. Ectomycorrhizal reflect environmental conditions along coastal California edaphic gradient.FEMS Microbiol. 2014; 87: 797-806Crossref Scholar,24Maynard D.S. Covey K.R. Lindner Glaeser Talbert D.A. Tinker P.J. Walker D.M. Crowther T.W. Consistent trade-offs trait expression broad scales.Nat. 4: 846-853Crossref (6) physiological syndromes.25Manzoni Taylor Richter Porporato Ågren G.I. stoichiometric carbon-use soils.New Phytol. 2012; 196: 79-91Crossref (477) Scholar,26Sinsabaugh R.L. Manzoni Moorhead D.L. communities: stoichiometry, methodology modelling.Ecol. Lett. 16: 930-939Crossref (274) Community composition central determinant mediate cycling. Given tremendous life, important elucidate groups regulate processes, yet our ability so remains fundamentally limited.27Wieder Kallenbach Bonan G.B. Integrating physio-chemical principles soils MIcrobial-MIneral Stabilization (MIMICS) model.Biogeosciences. 11: 3899-3917Crossref (101) Controls metabolism production frontier research.6Sulman Plant polymers resist decomposition were previously thought comprise chemical recalcitrance.28Kögel I. Estimation lignin forest humus layers.Soil 1986; 18: 589-594Crossref (199) However, advanced spectroscopy clarified adsorb minerals source SOM.16Liang Scholar,29Simpson A.J. Song Lam Novotny E.H. Hayes M.H.B. Unraveling structural components humin solution-state nuclear magnetic resonance spectroscopy.Environ. Technol. 2007; 41: 876-883Crossref (120) Functionally, referred mineral-associated matter, cycles differently larger, plant-derived particulate matter.30Lavallee Soong J.L. Cotrufo M.F. Conceptualizing forms address change 21st century.Glob. 261-273Crossref (4) slow turnover created paradigm shift research, inspired investigations understanding constraints specifically, production.25Manzoni Recent estimates suggest >50% derived exudates necromass,29Simpson some ecosystems reaches 87% Although many uncertainties must still be resolved majority characterized,31Malik A.A. Martiny J.B.H. Brodie E.L. A.C. Treseder K.K. Allison Defining trait-based strategies consequences change.ISME 14: 1-9Crossref Scholar,32Kallenbach Wallenstein Schipanksi M.E. Managing agroecosystems ecological unknowns, outcomes, path forward.Front. e1146Crossref importance contributions now well established.6Sulman ecology attempts understand underlying patterns abundances33Vellend Conceptual synthesis ecology.Q. 2010; 85: 183-206Crossref (733) help explain variation levels. varies orders lineages,34Roller B.R.K. Stoddard S.F. Schmidt T.M. Exploiting rRNA operon copy investigate reproductive strategies.Nat. e16160Crossref respire energy they (low efficiency) while others allocate (high efficiency).35Saifuddin Bhatnagar Segrè Finzi genome-scale models.Nat. 1-10Crossref (2) Scholar,36Pold Domeignoz-Horta L.A. Morrison E.W. Sistla S.A. sensitivity covary bacteria.mBio. 2020; 11https://doi.org/10.1128/mBio.02293-19Crossref accumulation biogeography, assessed molecular techniques based ribosomal DNA, clearly shown guilds organized via hierarchical processes.37Nemergut D.R. O"Neill S.P. Bilinski Stanish L.F. Knelman J.E. Darcy Lynch R.C. Wickey Ferrenberg Patterns assembly.Microbiol. Mol. 342-356Crossref (418) This suggests knowing where organisms live cycling.38Crowther van den Hoogen Wan Mayes Keiser A.D. Mo Maynard biogeochemistry.Science. 365https://doi.org/10.1126/science.aav0550Crossref (13) At same time, why provide context assembly. communities, first disperse site order establish.33Vellend Strong dispersal may selected conditions, capacity (or lack thereof) trades off certain processes.39Yawata Cordero O.X. Menolascina Hehemann J.H. Polz Competition-dispersal tradeoff ecologically differentiates recently speciated marine bacterioplankton populations.Proc. 111: 5622-5627Crossref (76) Scholar,40Dini-Andreote Elsas J.D. Olff Salles J.F. Dispersal-competition microbiomes quest land colonization.Sci. Rep. 8: e9451Crossref Once establish, acts against niches taxa tolerances nutrient acquisition capacities.41Vályi Mardhiah U. Rillig M.C. Hempel coexistence arbuscular fungi.ISME 2341-2351Crossref (60) Species compete facilitate establishment within communities.42Hibbing Fuqua Parsek M.R. Peterson Bacterial competition: surviving thriving jungle.Nat. 15-25Crossref investment dispersal, tolerance, competitive facilitative abilities, tradeoffs among these investments (Figure 1). synthesize life-history by-products become SOM. repository SOC, primarily throughout. insights chemistry analyses—much specific—have integrated. argue essential better merge areas research guide cohesive research. time unprecedented change, have solid basis scenarios. Fundamentally, outcome frequently represented Whole modeled incorporated versus efficiency), value ranging <0.1 >0.9 individual typically 0.25 0.8 whole depending structure, substrate type, conditions.25Manzoni Scholar,43Qiao Liang Du Z. Zhou Zhu Huang X. Luo Yan al.Global relation supply.Sci. 9: 5621Crossref What characterizes high upper range intriguing since contained substrates used does sufficient produce unit biomass.44Payne Energy yields heterotrophs.Annu. 1970; 17-52Crossref Scholar,45Roels J.A. Application macroscopic metabolism.Biotechnol. Bioeng. 1980; 22: 2457-2514Crossref Historically, constant parameter 0.55 (e.g., CENTURY46Parton Cole Ojima Analysis factors controlling grasslands Great Plains.Soil Soc. Am. 1987; 51: 1173-1179Crossref Scholar), inconsistent empirical concerning, exceptionally sensitive choice parameters.27Wieder A lower CENTURY diminishes residence consequently, sequestration.26Sinsabaugh Frameworks outlining increase decrease should occur necessary sequestration. Promising incorporate constrain (see outline Figure 1), build frameworks review include elements assembly, addition critiquing assumptions supported data. consider tolerance.27Wieder Scholar,47Chagnon P.-L. Bradley Maherali Klironomos J.N. fungi.Trends 484-491Abstract Full Text PDF Scholar, 48Malik Puissant Buckeridge Goodall Jehmlich Chowdhury Gweon H.S. Peyton Mason K.E. Agtmaal al.Land driven processes.Nat. e3591Crossref (32) 49Whitney, (2019). Physiological response availability. MSc thesis (University New Hampshire).Google basic hypothesis tolerance reduce formation. allocation toward respiration. There widespread fast efficiency.34Roller Scholar,50Novak Pfeiffer Lenski R.E. Sauer Bonhoeffer Experimental tests evolutionary trade-off yield coli.Am. Nat. 2006; 168: 242-251Crossref 51Lipson complex implications ecosystem processes.Front. 6: 615Crossref (46) 52Muscarella Trait-based approach efficiency.BioRxiv. (427161)https://doi.org/10.1101/427161Crossref Growth-rate-related Microbial-Mineral model, formation.27Wieder culture mixed growth-rate-efficiency MIMICS.34Roller Scholar,52Muscarella grow quickly ample ATP fuel efficient biosynthetic process,53Pfeiffer Evolutionary production.Z. Phys. Chem. 2002; 216: 51Crossref generally rather growth.50Novak Scholar,53Pfeiffer Fast bacteria cited overflow excess demand) reducing efficiency,25Manzoni inconsistently observed ubiquity questioned.36Pold Scholar,49Whitney, Across lines, positively correlated,36Pold Scholar,49Whit
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