International Journal of Molecular Sciences,
Journal Year:
2019,
Volume and Issue:
20(19), P. 4702 - 4702
Published: Sept. 23, 2019
CRISPR/Cas9-mediated
genome
editing
is
a
powerful
technology
that
has
been
used
for
the
genetic
modification
of
number
crop
species.
In
order
to
evaluate
efficacy
CRISPR/Cas9
in
root
crop,
sweet
potato
(Ipomoea
batatas),
two
starch
biosynthetic
pathway
genes,
IbGBSSI
(encoding
granule-bound
synthase
I),
and
IbSBEII
branching
enzyme
II),
were
targeted
starch-type
cultivar
Xushu22
carotenoid-rich
Taizhong6.
I.
batatas
was
transformed
using
binary
vector,
which
Cas9
gene
driven
by
Arabidopsis
AtUBQ
promoter
guide
RNA
controlled
AtU6
promoter.
A
total
72
35
Taizhong6
transgenic
lines
generated
analyzed
mutations.
The
mutation
efficiency
62-92%
with
multi-allelic
mutations
both
cultivars.
Most
nucleotide
substitutions
lead
amino
acid
changes
and,
less
frequently,
stop
codons.
addition,
short
insertions
or
deletions
also
found
IbSBEII.
Furthermore,
2658
bp
deletion
one
line.
contents
not
significantly
changed
IbGBSSI-
IbSBEII-knockout
compared
wild-type
control.
However,
allopolyploid
potato,
IbGBSSI-knockout
reduced,
while
increased,
amylose
percentage.
Our
results
demonstrate
an
effective
tool
improvement
qualities
breeding
polyploid
crops.
Physiological Reviews,
Journal Year:
2019,
Volume and Issue:
99(4), P. 1819 - 1875
Published: Aug. 22, 2019
Metabolomics
uses
advanced
analytical
chemistry
techniques
to
enable
the
high-throughput
characterization
of
metabolites
from
cells,
organs,
tissues,
or
biofluids.
The
rapid
growth
in
metabolomics
is
leading
a
renewed
interest
metabolism
and
role
that
small
molecule
play
many
biological
processes.
As
result,
traditional
views
as
being
simply
“bricks
mortar”
cells
just
fuel
for
cellular
energetics
are
upended.
Indeed,
appear
have
much
more
varied
far
important
roles
signaling
molecules,
immune
modulators,
endogenous
toxins,
environmental
sensors.
This
review
explores
how
yielding
new
insights
into
number
physiological
In
particular,
major
focus
on
illustrating
discoveries
made
through
improving
our
understanding
both
normal
physiology
pathophysiology
diseases.
These
influence
organ
function,
nutrient
sensing,
gut
physiology.
Collectively,
this
work
unified
system-wide
perspective
biology
wherein
metabolites,
proteins,
genes
understood
interact
synergistically
modify
actions
functions
organelles,
organisms.
Genome Medicine,
Journal Year:
2016,
Volume and Issue:
8(1)
Published: April 21, 2016
Mass
spectrometry-
and
nuclear
magnetic
resonance-based
metabolomic
studies
comparing
diseased
versus
healthy
individuals
have
shown
that
microbial
metabolites
are
often
the
compounds
most
markedly
altered
in
disease
state.
Recent
suggest
several
of
these
derive
from
transformation
dietary
components
significant
effects
on
physiological
processes
such
as
gut
immune
homeostasis,
energy
metabolism,
vascular
function,
neurological
behavior.
Here,
we
review
intriguing
diet-dependent
may
impact
host
physiology
therefore
be
appropriate
targets
for
therapeutic
interventions,
short-chain
fatty
acids,
trimethylamine
N-oxide,
tryptophan
tyrosine
derivatives,
oxidized
acids.
Such
interventions
will
require
modulating
either
bacterial
species
or
biosynthetic
enzymes
required
to
produce
metabolites,
so
briefly
describe
current
understanding
enzymatic
pathways
involved
their
biosynthesis
summarize
molecular
mechanisms
action.
We
then
discuss
more
detail
health
disease,
strategies
modulate
levels
promote
human
health.
also
future
needed
realize
full
potential
targeting
microbiota.
Toxins,
Journal Year:
2017,
Volume and Issue:
9(2), P. 52 - 52
Published: Jan. 29, 2017
If
chronic
kidney
disease
(CKD)
is
associated
with
an
impairment
of
function,
several
uremic
solutes
are
retained.
Some
these
exert
toxic
effects,
which
called
toxins.
p-Cresyl
sulfate
(pCS)
a
prototype
protein-bound
toxin
to
many
biological
and
biochemical
(toxic)
effects
have
been
attributed.
In
addition,
increased
levels
pCS
worsening
outcomes
in
CKD
patients.
finds
its
origin
the
intestine
where
gut
bacteria
metabolize
aromatic
amino
acids,
such
as
tyrosine
phenylalanine,
leading
phenolic
end
products,
one
components.
this
review
we
summarize
metabolic
intestine.
It
appears
that,
according
vitro
studies,
intestinal
generating
compounds
mainly
belong
families
Bacteroidaceae,
Bifidobacteriaceae,
Clostridiaceae,
Enterobacteriaceae,
Enterococcaceae,
Eubacteriaceae,
Fusobacteriaceae,
Lachnospiraceae,
Lactobacillaceae,
Porphyromonadaceae,
Staphylococcaceae,
Ruminococcaceae,
Veillonellaceae.
Since
remains
difficult
remove
by
dialysis,
microbiota
could
be
future
target
decrease
toxicity,
even
at
earlier
stages
CKD,
aiming
slowing
down
progression
decreasing
cardiovascular
burden.
Journal of Translational Medicine,
Journal Year:
2019,
Volume and Issue:
17(1)
Published: Jan. 3, 2019
Dysbiosis
represents
changes
in
composition
and
structure
of
the
gut
microbiome
community
(microbiome),
which
may
dictate
physiological
phenotype
(health
or
disease).
Recent
technological
advances
efforts
metagenomic
metabolomic
analyses
have
led
to
a
dramatical
growth
our
understanding
microbiome,
but
still,
mechanisms
underlying
microbiome-host
interactions
healthy
diseased
state
remain
elusive
their
elucidation
is
infancy.
Disruption
normal
microbiota
lead
intestinal
dysbiosis,
barrier
dysfunction,
bacterial
translocation.
Excessive
uremic
toxins
are
produced
as
result
alteration,
including
indoxyl
sulphate,
p-cresyl
trimethylamine-N-oxide,
all
implicated
variant
processes
kidney
diseases
development.
This
review
focuses
on
pathogenic
association
between
(the
gut-kidney
axis),
covering
CKD,
IgA
nephropathy,
nephrolithiasis,
hypertension,
acute
injury,
hemodialysis
peritoneal
dialysis
clinic.
Targeted
interventions
probiotic,
prebiotic
symbiotic
measures
discussed
for
potential
re-establishing
symbiosis,
more
effective
strategies
treatment
patients
suggested.
The
novel
insights
into
dysbiosis
helpful
develop
therapeutic
preventing
attenuating
complications.
Nutrients,
Journal Year:
2021,
Volume and Issue:
14(1), P. 166 - 166
Published: Dec. 30, 2021
The
gut
microbiota
has
been
linked
to
the
emergence
of
obesity,
metabolic
syndrome
and
onset
type
2
diabetes
through
decreased
glucose
tolerance
insulin
resistance.
Uncontrolled
can
lead
serious
health
consequences
such
as
impaired
kidney
function,
blindness,
stroke,
myocardial
infarction
lower
limb
amputation.
Despite
a
variety
treatments
currently
available,
cases
resulting
complications
are
on
rise.
One
promising
new
approach
focuses
modulating
with
probiotics,
prebiotics,
synbiotics
fecal
microbial
transplantation.
Differences
in
composition
have
observed
preclinical
animal
models
well
patients
diabetic
nephropathy,
retinopathy,
neuropathy,
cerebrovascular
disease,
coronary
heart
disease
peripheral
artery
compared
healthy
controls.
Severity
dysbiosis
was
associated
severity
restoration
probiotic
administration
human
improvement
symptoms
progression.
Characterizing
different
diseases
determining
causal
relationship
between
be
beneficial
formulating
therapeutic
interventions
for
complications.
In
this
review,
we
present
most
important
findings
regarding
role
chronic
their
underlying
mechanisms.
It
is
now
convincingly
clear
that
diet
one
of
the
most
influential
lifestyle
factors
contributing
to
rise
inflammatory
diseases
and
autoimmunity
in
both
developed
developing
countries.
In
addition,
modern
'Western
diet'
has
changed
recent
years
with
increased
caloric
intake,
changes
relative
amounts
dietary
components,
including
lower
fibre
higher
levels
fat
poor
quality
carbohydrates.
Diet
shapes
large‐bowel
microbial
ecology,
this
may
be
highly
relevant
human
diseases,
as
gut
microbiota
composition
are
associated
many
diseases.
Recent
studies
have
demonstrated
a
remarkable
role
for
diet,
their
metabolites—the
short‐chain
fatty
acids
(SCFAs)—in
pathogenesis
several
such
asthma,
arthritis,
bowel
disease,
colon
cancer
wound‐healing.
This
review
summarizes
how
metabolites
(particularly
SCFAs)
can
modulate
progression
autoimmunity,
reveal
molecular
mechanisms
(metabolite‐sensing
G
protein‐coupled
receptor
(GPCRs)
inhibition
histone
deacetylases
(HDACs)).
Therefore,
considerable
benefit
could
achieved
simply
through
use
probiotics
prevention
treatment
autoimmunity.
AJP Renal Physiology,
Journal Year:
2019,
Volume and Issue:
316(6), P. F1211 - F1217
Published: March 13, 2019
The
gut
microbiome
is
composed
of
a
diverse
population
bacteria
that
have
beneficial
and
adverse
effects
on
human
health.
has
recently
gained
attention
increasingly
noted
to
play
significant
role
in
health
number
disease
states.
Increasing
urea
concentration
during
chronic
kidney
(CKD)
leads
alterations
the
intestinal
flora
can
increase
production
gut-derived
toxins
alter
epithelial
barrier.
These
changes
lead
an
acceleration
process
injury.
A
strategies
been
proposed
interrupt
this
pathway
injury
CKD.
purpose
review
summarize
CKD,
tools
used
study
microbial
population,
attempts
its
composition
for
therapeutic
purposes.