BME Frontiers,
Journal Year:
2024,
Volume and Issue:
6
Published: Jan. 13, 2024
Spatial
monoomics
has
been
recognized
as
a
powerful
tool
for
exploring
life
sciences.
Recently,
spatial
multiomics
advanced
considerably,
which
could
contribute
to
clarifying
many
biological
issues.
techniques
in
epigenomics,
genomics,
transcriptomics,
proteomics,
and
metabolomics
can
enhance
our
understanding
of
functions
cellular
identities
by
simultaneously
measuring
tissue
structures
biomolecule
levels.
technology
evolved
from
multiomics.
Moreover,
the
resolution,
high-throughput
detection
capability,
capture
efficiency,
compatibility
with
various
sample
types
omics
have
considerably
advanced.
Despite
technological
advances
this
field,
data
analysis
frameworks
stagnated.
Current
challenges
include
incomplete
pipeline,
overly
complex
tasks,
few
established
strategies.
In
review,
we
systematically
summarize
recent
developments
improvements
related
pipeline.
On
basis
technology,
propose
integration
strategy
cross-platform,
cross-slice,
cross-modality.
We
potential
applications
aiming
provide
researchers
clinicians
better
how
such
is
expected
substantially
impact
biology
precision
medicine
through
measurements
extraction
biomolecular
features.
Signal Transduction and Targeted Therapy,
Journal Year:
2025,
Volume and Issue:
10(1)
Published: Feb. 11, 2025
Abstract
Accumulated
evidence
has
implicated
the
diverse
and
substantial
influence
of
lactate
on
cellular
differentiation
fate
regulation
in
physiological
pathological
settings,
particularly
intricate
conditions
such
as
cancer.
Specifically,
been
demonstrated
to
be
pivotal
molding
tumor
microenvironment
(TME)
through
its
effects
different
cell
populations.
Within
cells,
impacts
signaling
pathways,
augments
shuttle
process,
boosts
resistance
oxidative
stress,
contributes
lactylation.
In
various
populations,
interplay
between
immune
cells
governs
processes
differentiation,
response,
surveillance,
treatment
effectiveness.
Furthermore,
communication
stromal/endothelial
supports
basal
membrane
(BM)
remodeling,
epithelial-mesenchymal
transitions
(EMT),
metabolic
reprogramming,
angiogenesis,
drug
resistance.
Focusing
production
transport,
specifically
dehydrogenase
(LDH)
monocarboxylate
transporters
(MCT),
shown
promise
Inhibitors
targeting
LDH
MCT
act
both
suppressors
enhancers
immunotherapy,
leading
a
synergistic
therapeutic
effect
when
combined
with
immunotherapy.
The
review
underscores
importance
progression
provides
valuable
perspectives
potential
approaches
that
target
vulnerability
metabolism,
highlighting
Heel
Achilles
for
cancer
treatment.
Theranostics,
Journal Year:
2025,
Volume and Issue:
15(5), P. 1787 - 1821
Published: Jan. 2, 2025
Lactate
is
an
indispensable
substance
in
various
cellular
physiological
functions
and
plays
regulatory
roles
different
aspects
of
energy
metabolism
signal
transduction.
Lactylation
(Kla),
a
key
pathway
through
which
lactate
exerts
its
functions,
has
been
identified
as
novel
posttranslational
modification
(PTM).
Research
indicates
that
Kla
essential
balancing
mechanism
variety
organisms
involved
many
biological
processes
pathways.
closely
related
to
disease
development
represents
potential
important
new
drug
target.
In
line
with
existing
reports,
we
searched
for
newly
discovered
sites
on
histone
nonhistone
proteins;
reviewed
the
mechanisms
(particularly
focusing
enzymes
directly
reversible
regulation
Kla,
including
"writers"
(modifying
enzymes),
"readers"
(modification-binding
"erasers"
(demodifying
enzymes);
summarized
crosstalk
between
PTMs
help
researchers
better
understand
widespread
distribution
diverse
functions.
Furthermore,
considering
"double-edged
sword"
role
both
pathological
contexts,
this
review
highlights
"beneficial"
states
(energy
metabolism,
inflammatory
responses,
cell
fate
determination,
development,
etc.)
"detrimental"
pathogenic
or
inducive
effects
processes,
particularly
malignant
tumors
complex
nontumor
diseases.
We
also
clarify
molecular
health
disease,
discuss
feasibility
therapeutic
Finally,
describe
detection
technologies
their
applications
diagnosis
clinical
settings,
aiming
provide
insights
treatment
diseases
accelerate
translation
from
laboratory
research
practice.
Frontiers in Immunology,
Journal Year:
2025,
Volume and Issue:
15
Published: Jan. 10, 2025
Lactate,
long
viewed
as
a
byproduct
of
glycolysis
and
metabolic
waste.
Initially
identified
within
the
context
yogurt
fermentation,
lactate's
role
extends
beyond
culinary
applications
to
its
significance
in
biochemical
processes.
Contemporary
research
reveals
that
lactate
functions
not
merely
terminal
product
but
also
nexus
for
initiating
physiological
pathological
responses
body.
Lysine
lactylation
(Kla),
novel
post-translational
modification
(PTM)
proteins,
has
emerged
pivotal
mechanism
by
which
exerts
regulatory
influence.
This
epigenetic
potential
alter
gene
expression
patterns,
thereby
impacting
Increasing
evidence
indicates
correlation
between
adverse
prognosis
various
malignancies.
Consequently,
this
review
article
aims
encapsulate
proteins
interact
with
lactate,
elucidate
tumorigenesis
progression,
explore
therapeutic
targets
afforded
modulation
lactylation.
The
objective
is
clarify
oncogenic
provide
strategic
framework
future
directions
burgeoning
field.
Research Square (Research Square),
Journal Year:
2025,
Volume and Issue:
unknown
Published: Jan. 6, 2025
Abstract
Background
Hepatocellular
carcinoma
(HCC)
is
a
major
global
health
issue,
with
poor
prognosis
often
associated
dysregulated
metabolic
pathways,
especially
lactate
metabolism.
This
study
explored
the
prognostic
significance
of
lactate-associated
genes
in
HCC
and
their
potential
as
therapeutic
targets.
Methods
We
analyzed
RNA-seq
clinical
data
from
374
patients
The
Cancer
Genome
Atlas
(TCGA)
database.
Using
Cox
regression,
LASSO
analysis,
Kaplan-Meier
survival
curves,
we
identified
key
patient
outcomes.
Functional
validations,
including
Western
blot,
flow
cytometry,
molecular
docking
studies,
were
performed
to
confirm
biological
impact
these
genes.
Results
G6PD,
IK,
CALML5
significant
markers
for
HCC.
A
model
was
developed
that
effectively
stratified
into
risk
groups,
which
correlated
survival.
G6PD’s
role
immune
modulation
its
drug
target
validated
through
biochemical
assays
computational
analyses.
HepG2
cells
confirmed
alterations
G6PD
expression
affect
T
cell
activity,
knockdown
enhancing
IFN-γ
production
overexpression
inhibiting
it,
demonstrating
evasion.
Conclusions
establishes
metabolism
genes,
particularly
validation
immunomodulatory
effects
further
supports
strategies
aimed
at
surveillance
treatment
outcomes
International Journal of Genomics,
Journal Year:
2025,
Volume and Issue:
2025(1)
Published: Jan. 1, 2025
Background:
Lactylation
is
closely
involved
in
cancer
progression,
but
its
role
hepatocellular
carcinoma
(HCC)
unclear.
The
present
work
set
out
to
develop
a
lactylation-related
gene
(LRG)
signature
for
HCC.
Methods:
lactylation
score
of
tumor
and
normal
groups
was
calculated
using
the
variation
analysis
(GSVA)
package.
single-cell
RNA
sequencing
(scRNA-seq)
HCC
performed
"Seurat"
Prognostic
LRGs
were
selected
by
performing
univariate
least
absolute
shrinkage
selection
operator
(LASSO)
Cox
regression
analyses
validate
Riskscore
model.
Functional
enrichment
conducted
(GSEA)
"clusterProfiler"
Genomic
characteristics
between
different
risk
compared,
mutational
burden
(TMB)
"Maftools"
Immune
cell
infiltration
assessed
algorithms
cell-type
identification
estimating
relative
subsets
transcript
(CIBERSORT),
microenvironment
populations-counter
(MCP-counter),
proportions
immune
cells
(EPIC),
estimation
resource
(TIMER),
single-sample
(ssGSEA).
Immunotherapy
response
predicted
dysfunction
exclusion
(TIDE)
algorithm.
Drug
sensitivity
analyzed
"pRRophetic"
A
nomogram
established
"rms"
expressions
prognostic
verified
vitro
test,
counting
kit-8
(CCK-8),
wound
healing,
transwell
assays
carried
measure
viability,
migration,
invasion
cells.
Results:
score,
which
higher
group
than
group,
has
been
confirmed
as
an
independent
factor
evaluation
Six
LRGs,
including
two
protective
genes
(FTCD
APCS)
four
(LGALS3,
C1orf43,
TALDO1,
CCT5),
identified
model
with
strong
prediction
performance
scRNA-seq
revealed
that
LGALS3
largely
expressed
myeloid
cells,
while
APCS,
FTCD,
CCT5,
C1orf43
mainly
hepatocytes.
high-risk
primarily
enriched
pathways
occurrence
development,
T
infiltration.
Moreover,
found
be
less
responsive
immunotherapy
more
sensitive
chemotherapeutic
drugs.
By
integrating
clinical
features,
high
predictive
accuracy
developed.
Additionally,
highly
Silencing
CCT5
inhibited
Conclusion:
developed
novel
LRG
could
considered
promising
therapeutic
target
biomarker
Experimental Hematology and Oncology,
Journal Year:
2025,
Volume and Issue:
14(1)
Published: March 8, 2025
Cancer
remains
the
leading
cause
of
mortality
worldwide,
and
emergence
drug
resistance
has
made
identification
new
therapeutic
targets
imperative.
Lactate,
traditionally
viewed
as
a
byproduct
glycolysis
with
limited
ATP-producing
capacity,
recently
gained
recognition
critical
signaling
molecule.
It
plays
key
role
not
only
in
cancer
cell
metabolism
but
also
shaping
tumor
microenvironment
(TME).
Histone
lysine
lactylation,
newly
identified
post-translational
modification,
been
shown
to
influence
range
cellular
processes
cancer.
Current
research
focuses
on
mechanisms
functions
histone
lactylation
cancer,
including
its
gene
expression
regulation,
signal
transduction,
protein
synthesis.
However,
despite
these
advancements,
there
are
still
plenty
barriers
quest
unravel
modification.
The
single-cell
spatial
transcriptomics
may
offer
valuable
insights
for
selecting
targets.
This
review
provides
comprehensive
summary
applications
modification
clinical
settings.
Through
detailed
analysis,
we
identify
challenges
limitations
that
exist
current
landscape.
These
lay
groundwork
future
studies
by
highlighting
promising
directions.
Research Square (Research Square),
Journal Year:
2025,
Volume and Issue:
unknown
Published: March 20, 2025
AbstractBackground:
Epigenetic
regulator
lactate,
a
glycolysis
product,
affects
gene
expression
via
histone
lactylation,
promoting
tumor
growth
and
immunosuppression.
But
its
related
genes'
role
in
thyroid
carcinoma
(THCA)
remains
unclear.
Methods:
Lactylation
-
genes
from
TCGA
were
consensus
clustered.
DEGs
between
clusters
analyzed
Cox
regression,
Random_forest,
LASSO
to
create
Lactylation
High/Low
risk
signature.
data
was
split
for
validation.
Immune
cell
infiltration,
GSEA,
TIDE
score
drug
sensitivity
of
the
subtypes
examined.
A
lactylation
scoring
model
built
as
per
prior
method,
lactate
levels
"Two
risk"
cluster"
compared.
Signature
detected
THCA
GSE33630
datasets.
Results:
Ten
formed
2
prognostic
valuable
(p
=
0.01)
THCA.
137
identified
these
clusters.
7
signature
(High
Low
risk)
showed
significant
survival
correlation
<
0.001).
infiltration
GSEA
analysis
higher
immune
activity
low
group.
The
Exclusion
suggested
escape
high
nomogram
including
established
prediction.
Cluster
B
High
group
had
poor
prognoses.
linked
score,
indicating
more
escape.
Validation
samples
CLDN2,
ARSI,
SPOCD1,
TUBB3
ATP2C2
expression.
In
conclusions,
the
can
not
only
serve
marker
(THCA),
but
may
also
provide
new
therapeutic
targets
it.
Future
studies
should
further
validate
potential
this
clinical
application.
Cancer Medicine,
Journal Year:
2025,
Volume and Issue:
14(6)
Published: March 1, 2025
ABSTRACT
Background
Hepatocellular
carcinoma
(HCC)
is
a
major
global
health
issue,
with
poor
prognosis
often
associated
dysregulated
metabolic
pathways,
especially
lactate
metabolism.
This
study
explored
the
prognostic
significance
of
lactate‐associated
genes
in
HCC
and
their
potential
as
therapeutic
targets.
Methods
We
analyzed
RNA‐seq
clinical
data
from
374
patients
The
Cancer
Genome
Atlas
(TCGA)
database.
Using
Cox
regression,
LASSO
analysis,
Kaplan–Meier
survival
curves,
we
identified
key
patient
outcomes.
Functional
validations,
including
Western
blot,
flow
cytometry,
molecular
docking
studies,
were
performed
to
confirm
biological
impact
these
genes.
Results
G6PD,
IK,
CALML5
significant
markers
for
HCC.
A
model
was
developed
that
effectively
stratified
into
risk
groups,
which
correlated
survival.
G6PD's
role
immune
modulation
its
drug
target
validated
through
biochemical
assays
computational
analyses.
HepG2
cells
confirmed
alterations
G6PD
expression
affect
T
cell
activity,
knockdown
enhancing
IFN‐γ
production
overexpression
inhibiting
it,
demonstrating
evasion.
Conclusions
establishes
metabolism
genes,
particularly
validation
immunomodulatory
effects
further
supports
strategies
aimed
at
surveillance
treatment
outcomes