Fast and robust wave optics-based reconstruction protocol for Fourier lightfield microscopy DOI Creative Commons
Nicolò Incardona, Ángel Tolosa, Genaro Saavedra

et al.

Optics and Lasers in Engineering, Journal Year: 2022, Volume and Issue: 161, P. 107336 - 107336

Published: Oct. 30, 2022

Fourier lightfield microscopy (FLMic) is a powerful technique to record 3D images of thick dynamic samples.Belonging FLMic the general class computational imaging techniques, its efficiency determined by several factors, like optical system, calibration process, reconstruction algorithm, or computation architecture.In case and algorithm should be fully adapted singular features technique.To this end, concerning reconstruction, we discard use experimental PSFs, propose synthetic one, which calculated on basis paraxial optics taking into account equal influence diffraction pixelation.Using quite simple PSF, performing adequate finally implementing in GPU, demonstrate here possibility obtaining with good results terms resolution strong improvement time.In summary, aiming accelerate widespread among users researchers, are proposing fast protocol that very flexible robust against any slight misalignment change element.

Language: Английский

Cationic cholesterol-dependent LNP delivery to lung stem cells, the liver, and heart DOI Creative Commons

Afsane Radmand,

Hyejin Kim, Jared Beyersdorf

et al.

Proceedings of the National Academy of Sciences, Journal Year: 2024, Volume and Issue: 121(11)

Published: March 4, 2024

Adding a cationic helper lipid to nanoparticle (LNP) can increase lung delivery and decrease liver delivery. However, it remains unclear whether charge-dependent tropism is universal or, alternatively, depends on the component that charged. Here, we report evidence cholesterol-dependent differ from lipid-dependent tropism. By testing how 196 LNPs delivered mRNA 22 cell types, found charged cholesterols led different lung:liver ratio than lipids. We also combining cholesterol with in heart as well several including stem cell-like populations. These data highlight utility of exploring LNP

Language: Английский

Citations

20

Deep-learning-augmented computational miniature mesoscope DOI Creative Commons
Yujia Xue,

Qianwan Yang,

Guorong Hu

et al.

Optica, Journal Year: 2022, Volume and Issue: 9(9), P. 1009 - 1009

Published: Aug. 3, 2022

Fluorescence microscopy is essential to study biological structures and dynamics. However, existing systems suffer from a tradeoff between field-of-view (FOV), resolution, complexity, thus cannot fulfill the emerging need of miniaturized platforms providing micron-scale resolution across centimeter-scale FOVs. To overcome this challenge, we developed Computational Miniature Mesoscope (CM$^2$) that exploits computational imaging strategy enable single-shot 3D high-resolution wide FOV in platform. Here, present CM$^2$ V2 significantly advances both hardware computation. We complement 3$\times$3 microlens array with new hybrid emission filter improves contrast by 5$\times$, design 3D-printed freeform collimator for LED illuminator excitation efficiency 3$\times$. reconstruction large volume, develop an accurate efficient linear shift-variant (LSV) model characterizes spatially varying aberrations. then train multi-module deep learning model, CM$^2$Net, using only 3D-LSV simulator. show CM$^2$Net generalizes well experiments achieves $\sim$7-mm 800-$\mu$m depth, provides $\sim$6-$\mu$m lateral $\sim$25-$\mu$m axial resolution. This $\sim$8$\times$ better localization $\sim$1400$\times$ faster speed as compared previous model-based algorithm. anticipate simple low-cost miniature system will be impactful many large-scale fluorescence applications.

Language: Английский

Citations

39

Long-term intravital subcellular imaging with confocal scanning light-field microscopy DOI Creative Commons
Zhi Lü,

Siqing Zuo,

Minghui Shi

et al.

Nature Biotechnology, Journal Year: 2024, Volume and Issue: unknown

Published: May 27, 2024

Abstract Long-term observation of subcellular dynamics in living organisms is limited by background fluorescence originating from tissue scattering or dense labeling. Existing confocal approaches face an inevitable tradeoff among parallelization, resolution and phototoxicity. Here we present scanning light-field microscopy (csLFM), which integrates axially elongated line-confocal illumination with the rolling shutter (sLFM). csLFM enables high-fidelity, high-speed, three-dimensional (3D) imaging at near-diffraction-limit both optical sectioning low By simultaneous 3D excitation detection, intensity can be reduced below 1 mW mm − 2 , 15-fold higher signal-to-background ratio over sLFM. We imaged 25,000 timeframes optically challenging environments different species, such as migrasome delivery mouse spleen, retractosome generation liver voltage Drosophila . Moreover, facilitates large-scale neural recording crosstalk, leading to high orientation selectivity visual stimuli, similar two-photon microscopy, aids understanding coding mechanisms.

Language: Английский

Citations

16

Light-field flow cytometry for high-resolution, volumetric and multiparametric 3D single-cell analysis DOI Creative Commons
Xuanwen Hua, Keyi Han, Biagio Mandracchia

et al.

Nature Communications, Journal Year: 2024, Volume and Issue: 15(1)

Published: March 4, 2024

Abstract Imaging flow cytometry (IFC) combines and fluorescence microscopy to enable high-throughput, multiparametric single-cell analysis with rich spatial details. However, current IFC techniques remain limited in their ability reveal subcellular information a high 3D resolution, throughput, sensitivity, instrumental simplicity. In this study, we introduce light-field cytometer (LFC), an system capable of high-content, single-shot, multi-color acquisition up 5,750 cells per second near-diffraction-limited resolution 400-600 nm all three dimensions. The LFC integrates optical, microfluidic, computational strategies facilitate the volumetric visualization various characteristics through convenient access commonly used epi-fluorescence platforms. We demonstrate effectiveness assaying, analyzing, enumerating intricate morphology, function, heterogeneity using phantoms biological specimens. advancement offered by presents promising methodological pathway for broad cell translational discoveries, potential widespread adoption biomedical research.

Language: Английский

Citations

12

Spaceflight alters protein levels and gene expression associated with stress response and metabolic characteristics in human cardiac spheroids DOI
Parvin Forghani, Wenhao Liu, Zeyu Wang

et al.

Biomaterials, Journal Year: 2025, Volume and Issue: 317, P. 123080 - 123080

Published: Jan. 7, 2025

Language: Английский

Citations

1

Fourier light-field imaging of human organoids with a hybrid point-spread function DOI Creative Commons
Wenhao Liu,

Ge-Ah R Kim,

Shuichi Takayama

et al.

Biosensors and Bioelectronics, Journal Year: 2022, Volume and Issue: 208, P. 114201 - 114201

Published: March 26, 2022

Language: Английский

Citations

20

Optimal sparsity allows reliable system-aware restoration of fluorescence microscopy images DOI Creative Commons
Biagio Mandracchia, Wenhao Liu, Xuanwen Hua

et al.

Science Advances, Journal Year: 2023, Volume and Issue: 9(35)

Published: Aug. 30, 2023

Fluorescence microscopy is one of the most indispensable and informative driving forces for biological research, but extent observable phenomena essentially determined by content quality acquired images. To address different noise sources that can degrade these images, we introduce an algorithm multiscale image restoration through optimally sparse representation (MIRO). MIRO a deterministic framework models acquisition process uses pixelwise correction to improve quality. Our study demonstrates this approach yields remarkable fluorescence signal wide range systems, regardless detector used (e.g., electron-multiplying charge-coupled device, scientific complementary metal-oxide semiconductor, or photomultiplier tube). improves current imaging capabilities, enabling fast, low-light optical microscopy, accurate analysis, robust machine intelligence when integrated with deep neural networks. This expands knowledge be obtained from microscopy.

Language: Английский

Citations

12

Single-cell technology for plant metabolomics DOI
Dibyendu Seth, Ankan Das, Sandip Debnath

et al.

Elsevier eBooks, Journal Year: 2025, Volume and Issue: unknown, P. 221 - 246

Published: Jan. 1, 2025

Language: Английский

Citations

0

Imaging 3D cell cultures with optical microscopy DOI
Huai-Ching Hsieh,

Qinghua Han,

David Brenes

et al.

Nature Methods, Journal Year: 2025, Volume and Issue: unknown

Published: April 17, 2025

Language: Английский

Citations

0

Multiscale and recursive unmixing of spatiotemporal rhythms for live-cell and intravital cardiac microscopy DOI
Zhi Ling, Wenhao Liu, Kyungduck Yoon

et al.

Nature Cardiovascular Research, Journal Year: 2025, Volume and Issue: unknown

Published: May 7, 2025

Language: Английский

Citations

0