CoralNet
is
a
cloud-based
website
and
platform
for
manual,
semi-automatic
automatic
analysis
of
coral
reef
images.
Users
access
through
optimized
web-based
workflows
common
tasks,
other
systems
can
interface
API's.
Today,
marine
scientists
are
widely
using
CoralNet,
nearly
3,000
registered
users
have
up-loaded
1,741,855
images
from
2,040
distinct
sources
with
over
65
million
annotations.
hosted
on
AWS,
free
users,
the
code
open
source
1
.
In
January
2021,
we
released
1.0
which
has
new
machine
learning
engine.
This
paper
provides
an
overview
that
engine,
process
choosing
particular
architecture,
its
training,
comparison
to
some
most
promising
architectures.
nutshell,
uses
transfer
EfficientNet-B0
backbone
trained
16M
labelled
patches
benthic
hierarchical
Multi-layer
Perceptron
classifier
source-specific
data.
When
evaluated
hold-out
test
set
26
sources,
error
rate
was
18.4%
(relative)
lower
than
Beta.
Coral Reefs,
Journal Year:
2019,
Volume and Issue:
38(4), P. 539 - 545
Published: July 22, 2019
2014–2017
was
an
unprecedented
period
of
successive
record-breaking
hot
years,
which
coincided
with
the
most
severe,
widespread,
and
longest-lasting
global-scale
coral
bleaching
event
ever
recorded.
The
(GCBE)
resulted
in
very
high
mortality
on
many
reefs,
rapid
deterioration
reef
structures,
far-reaching
environmental
impacts.
Through
papers
this
special
issue
Coral
Reefs
entitled
Global
Bleaching
Event:
Drivers,
Impacts,
Lessons
Learned,
as
well
published
elsewhere,
we
have
a
good
analysis
GCBE
its
These
studies
provided
key
insights
into
how
climate
change-driven
marine
heatwaves
are
destroying
ecosystems:
(a)
is
unique
satellite
record
spatial
scale,
duration,
intensity,
repetition
bleaching.
(b)
impacts
been
severe
seen
at
reefs.
(c)
Timing
observations
matters
needs
to
be
considered
during
(d)
On
both
global
local
scales,
intensity
heat
stress
varied.
(e)
We
continue
see
important
differences
among
within
taxa,
roles
played
by
algal
symbionts
microbiome.
(f)
Heat
play
role
subsequent
disease,
plays
mortality.
(g)
Impacts
ripple
far
beyond
corals,
significant
changes
fish
invertebrate
community
that
may
last
decades.
(h)
structure
individual
coral's
skeletons
entire
reefs
has
eroded
much
more
quickly
than
previously
realized.
(i)
little
support
for
proposed
"lifeboat"
hypothesis,
whereby
deep
or
mesophotic
serve
means
salvation.
(j)
While
protected
areas
(MPAs)
provide
protection
from
stressors,
they
not
only
do
protect
but
also
here
evidence
resilience.
Frontiers in Marine Science,
Journal Year:
2019,
Volume and Issue:
6
Published: Aug. 23, 2019
Climate
change
is
increasing
the
frequency
and
severity
of
marine
heatwaves.
A
recent
extreme
warming
event
(2014-2016)
unprecedented
magnitude
duration
in
California
Current
System
allowed
us
to
evaluate
response
kelp
forest
community
near
its
southern
(warm)
distribution
limit.
We
obtained
sea
surface
temperatures
for
northern
Pacific
Baja
California,
Mexico,
collected
data
at
three
islands,
before
after
event.
The
was
most
intense
persistent
observed
date,
with
low-pass
anomalies
1°C
warmer
than
previous
extremes
during
1982-1984
1997-1998
El
Niños.
period
between
2014-2017
accounted
~50%
heatwaves
days
past
37
years,
highest
maximum
temperature
intensities
peaking
5.9°C
above
average
period.
found
significant
declines
number
Macrocystis
pyrifera
individuals,
except
northernmost
island,
corresponding
fronds
per
individual.
also
changes
structure
associated
beds:
half
fish
invertebrate
species
disappeared
heatwaves,
affinities
appeared
or
increased
their
abundance,
introduced
algae,
previously
absent,
all
islands.
Changes
subcanopy
understory
algal
assemblages
were
evident;
however,
varied
among
These
results
suggest
that
effect
global
can
be
more
apparent
sensitive
species,
such
as
sessile
invertebrates,
warming-related
impacts
have
potential
facilitate
establishment
tropical
invasive
species.
Engineering Applications of Computational Fluid Mechanics,
Journal Year:
2018,
Volume and Issue:
12(1), P. 810 - 823
Published: Jan. 1, 2018
This
study
explores
the
river-flow-induced
impacts
on
performance
of
machine
learning
models
applied
for
forecasting
water
quality
parameters
in
coastal
waters
Hilo
Bay,
Pacific
Ocean.
For
this
purpose,
hourly
recorded
salinity,
temperature
and
turbidity
as
well
flow
data
Wailuku
River
were
used.
Several
including
artificial
neural
network,
extreme
support
vector
regression
have
been
employed
to
investigate
impact
from
current
time
up
2
h
ahead.
Following
input
structure
models,
two
separate
based
excluding
river
developed
each
variable
quantify
importance
discharge
accuracy
models.
The
different
was
found
be
close
other
showing
similar
pattern
considering
uncertainty
forecasts.
results
revealed
that
influenced
salinity
bay
which
variables
had
better
compared
with
those
series.
Among
investigated
research,
made
most
least
improvement
efficiency
temperature,
respectively.
Overall,
it
observed
can
properly
forecasted
several
hours
ahead
providing
a
potentially
valuable
tool
environmental
management
monitoring
areas.
Frontiers in Marine Science,
Journal Year:
2019,
Volume and Issue:
6
Published: Dec. 13, 2019
Anomalously
Globally,
anomalously
warm
temperature
events
have
increased
by
34%
in
frequency
and
17%
duration
from
1925
to
2016
with
potentially
major
impacts
on
coastal
ecosystems.
These
'marine
heatwaves'
(MHWs)
been
linked
changes
primary
productivity,
community
composition
biogeography
of
seaweeds,
which
often
control
ecosystem
function
services.
Here
we
review
the
literature
seaweed
responses
MHWs,
including
58
observations
related
resistance,
bleaching,
abundance,
species
invasions
local
regional
extinctions.
More
records
existed
for
canopy-forming
kelps
bladed
filamentous
turf-forming
seaweeds
than
fucoids,
geniculate
coralline
turf
crustose
algae.
Turf-forming
especially
invasive
generally
abundance
after
a
MHW,
whereas
native
fucoids
typically
declined
abundance.
We
also
found
three
four
examples
extinctions
kelp
one
example
extinction
following
specific
that
likely
long
term
consequences
ecological
structure
functioning.
Although
relatively
small
number
studies
described
MHWs
seaweed,
broad
range
documented
highlights
necessity
better
baseline
information
regarding
distributions
performance,
need
study
characteristics
affect
vulnerability
resilience
these
increasingly
important
climatic
perturbations.
A
factor
will
be
disentangle
caused
extreme
increases
itself
co-occurring
potential
stressors
altered
current
patterns,
water
clarity
nutrient
content,
solar
radiation
desiccation
stress
intertidal
zone.
With
future
anticipated
intensity,
frequencies
expect
see
more
replacements
large
long-lived
habitat
forming
smaller
ephemeral
weeds,
reducing
effective
services
seaweed-dominated
reefs
can
provide.
Philosophical Transactions of the Royal Society B Biological Sciences,
Journal Year:
2020,
Volume and Issue:
375(1794), P. 20190116 - 20190116
Published: Jan. 27, 2020
Tropical
forests
and
coral
reefs
host
a
disproportionately
large
share
of
global
biodiversity
provide
ecosystem
functions
services
used
by
millions
people.
Yet,
ongoing
climate
change
is
leading
to
an
increase
in
frequency
magnitude
extreme
climatic
events
the
tropics,
which,
combination
with
other
local
human
disturbances,
unprecedented
negative
ecological
consequences
for
tropical
reefs.
Here,
we
overview
how
where
extremes
are
affecting
most
biodiverse
ecosystems
on
Earth
summarize
interactions
between
global,
regional
stressors
forest
reef
systems
through
impacts
resilience.
We
also
discuss
some
key
challenges
opportunities
promote
mitigation
adaptation
changing
at
scales.
This
article
part
theme
issue
'Climate
ecosystems:
threats,
solutions'.
PLoS ONE,
Journal Year:
2018,
Volume and Issue:
13(4), P. e0195814 - e0195814
Published: April 19, 2018
Coral
bleaching
continues
to
be
one
of
the
most
devastating
and
immediate
impacts
climate
change
on
coral
reef
ecosystems
worldwide.
In
2015,
a
major
event
was
declared
as
"3rd
global
event"
by
United
States
National
Oceanic
Atmospheric
Administration,
impacting
large
number
reefs
in
every
ocean.
The
Red
Sea
no
exception,
we
present
herein
situ
observations
status
central
Saudi
Arabian
from
September
following
extended
periods
high
temperatures
reaching
upwards
32.5°C
our
study
area.
We
examined
eleven
using
line-intercept
transects
at
three
different
depths,
including
all
that
were
surveyed
during
previous
2010.
Bleaching
prevalent
inshore
(55.6%
±
14.6%
live
cover
exhibited
bleaching)
shallower
(41%
10.2%
corals
5m
depth)
within
reefs.
Similar
taxonomic
groups
(e.g.,
Agariciidae)
affected
2015
Most
interestingly,
Acropora
Porites
had
similar
rates
(~30%
each)
relative
(~7%
across
2015.
genera
with
highest
levels
(>60%)
also
among
rarest
(<1%
cover)
While
this
bodes
well
for
retention
cover,
it
may
ultimately
lead
decreased
species
richness,
often
considered
an
important
component
healthy
reef.
resultant
long-term
changes
these
communities
remain
seen.
Scientific Reports,
Journal Year:
2017,
Volume and Issue:
7(1)
Published: Nov. 27, 2017
Growth
and
contraction
of
ecosystem
engineers,
such
as
trees,
influence
structure
function.
On
coral
reefs,
methods
to
measure
small
changes
in
the
microhabitats,
driven
by
growth
colonies
skeletons,
are
extremely
limited.
We
used
3D
reconstructions
quantify
external
tabular
Acropora
spp.,
dominant
habitat-forming
corals
shallow
exposed
reefs
across
Pacific.
The
volume
surface
area
live
increased
21%
22%,
respectively,
12
months,
corresponding
a
mean
annual
linear
extension
5.62
cm
yr
Frontiers in Marine Science,
Journal Year:
2019,
Volume and Issue:
6
Published: Aug. 16, 2019
A
changing
climate
is
driving
increasingly
common
and
prolonged
marine
heatwaves
(MHWs)
these
extreme
events
have
now
been
widely
documented
to
severely
impact
ecosystems
globally.
However
MHWs
rarely
recently
considered
when
examining
temperature-induced
degradation
of
coral
reef
ecosystems.
Here
we
consider
extreme,
localised
thermal
anomalies,
nested
within
broader
increases
in
sea
surface
temperature,
which
fulfil
the
definitive
criteria
for
MHWs.
These
acute
intense
events,
referred
here
as
MHW
hotspots,
are
not
always
well
represented
current
framework
used
describe
bleaching,
but
do
distinct
ecological
outcomes,
including
widespread
bleaching
rapid
mass
mortality
putatively
thermally
tolerant
species.
The
physical
drivers
hotspots
discussed
here,
doing
so
present
a
comprehensive
theoretical
that
links
biological
responses
photo-endosymbiotic
organism
stress
changes
on
reefs
associated
after
hotspots.
We
how
onset
high
temperatures
drives
immediate
heat-stress
induced
cellular
damage,
overwhelming
mechanisms
would
otherwise
mitigate
gradually
accumulated
stress.
warm
environment,
increased
light
penetration
skeleton
due
loss
tissues,
coupled
with
tissue
decay
support
microbial
growth
skeletal
microenvironment,
resulting
unrecognised
consequence
degeneration
skeletons.
This
accelerated
skeletonson
scale
hinder
recovery
populations
increase
likelihood
phase
shifts
towards
algal
dominance.
suggest
through
heat-induced
mortality,
compromise
reefs'
structural
frameworks
detriment
long
term
recovery.
propose
be
class
reefs,
expanded
include
these.
urge
further
research
into
affects
bioerosion
by
endoliths.