medRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: June 1, 2024
Abstract
Background
Children
with
cerebral
palsy
(CP)
have
an
injury
to
the
central
nervous
system
around
time
of
birth
that
affects
development
brain
and
spinal
cord.
This
leads
changes
in
gait
neuromechanics,
including
muscle
activity
joint
kinematics.
Transcutaneous
cord
stimulation
(tSCS)
is
a
novel
neuromodulation
technique
may
improve
movement
coordination
children
CP
when
paired
targeted
physical
therapy.
Research
question
How
does
combination
tSCS
short-burst
interval
locomotor
treadmill
training
(SBLTT)
affect
individual
neuromechanics
CP?
Methods
Four
(4-13
years
old),
received
24
sessions
each
SBLTT
only
(tSCS+SBLTT).
Clinical
assessments
spasticity
passive
range
motion
(PROM),
as
well
biomechanical
kinematics,
musculotendon
lengths,
were
recorded
during
overground,
barefoot
walking.
Assessments
taken
before
after
intervention,
8-weeks
later.
Results
The
tSCS+SBLTT
led
greater
increases
hip
knee
extension
than
for
three
participants.
Three
also
became
more
plantarflexed
at
ankle
stance
compared
only.
While
reduced
spasticity,
these
weakly
correlated
lengths
or
PROM,
largest
correlation
between
change
gastrocnemius
operating
length
fast
walking
(R
2
=
0.26)
plantarflexor
PROM
0.23).
Significance
used
upright,
less
crouched
posture
tSCS+SBLTT.
Large
reductions
kinematics
PROM.
Understanding
mechanisms
by
which
critical
optimize
inform
use
clinical
care.
medRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2025,
Volume and Issue:
unknown
Published: Feb. 7, 2025
Abstract
Objective
Evaluate
the
impact
of
bariatric
surgery
on
monthly
earnings
and
employee
status
among
working-age
adults,
examine
variations
across
sociodemographic
characteristics.
Design
Retrospective
longitudinal
cohort
study
using
national,
linked
administrative
datasets.
Setting
Hospital
inpatient
services
in
England
between
1
April
2014
31
December
2022.
Participants
40,662
individuals
who
had
a
procedure
obesity
diagnosis
during
period,
with
no
history
previous
5
years,
were
25
to
64
years
old
at
date
surgery.
We
also
included
49,921
sampled
from
general
population
not
matched
by
age
sex
those
Main
outcome
measures
Monthly
pay
–
for
all
months
only
where
individual
was
paid
employment
expressed
2023
prices;
status.
Results
Among
people
living
surgery,
there
sustained
increase
six
after
mean
£84
per
month
compared
before
employment,
probability
being
4
4.3
percentage
points
The
increases
greater
males.
over
5-year
follow
up
time
youngest
groups.
Conclusions
Bariatric
is
associated
an
increased
employed,
resulting
earnings.
These
findings
suggest
that
negatively
impacts
labour
market
outcomes
management
interventions
are
likely
generate
economic
benefits
both
macroeconomic
level
increasing
likelihood
obesity.
medRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2025,
Volume and Issue:
unknown
Published: March 4, 2025
Purpose
Low
back
pain
is
the
world’s
leading
cause
of
disability
and
pathology
lumbar
intervertebral
discs
frequently
considered
a
driver
pain.
The
geometric
characteristics
offer
valuable
insights
into
their
mechanical
behavior
pathological
conditions.
In
this
study,
we
present
convolutional
neural
network
(CNN)
autoencoder
to
extract
latent
features
from
segmented
disc
MRI.
Additionally,
interpret
these
demonstrate
utility
in
identifying
pathology,
providing
complementary
perspective
standard
measures.
Methods
We
examined
195
sagittal
T1-weighted
MRI
spine
publicly
available
multi-institutional
dataset.
proposed
pipeline
includes
five
main
steps:
1)
segmenting
MRI,
2)
training
CNN
extracting
features,
3)
measuring
4)
predicting
narrowing
with
and/or
5)
determining
relationship
between
features.
Results
Our
segmentation
model
achieved
an
IoU
0.82
(95%
CI:
0.80–0.84)
DSC
0.90
0.89–0.91).
minimum
bottleneck
size
for
which
converged
was
4×1
after
350
epochs
(IoU
0.9984
-
95%
0.9979–0.9989).
Combining
improved
predictions
compared
using
either
feature
set
alone.
Latent
encoded
shape
angular
orientation.
Conclusions
This
study
presents
CNN-autoencoder
enhancing
prediction
interpretability.
Future
work
will
integrate
voxel
intensity
analyze
composition.
Abstract
Altered
glymphatic
function
is
observed
for
many
neurological
diseases.
Glioma,
one
of
the
most
common
brain
cancers,
known
to
have
altered
fluid
dynamics
in
terms
edema
and
blood-brain-barrier
breakdown,
both
features
potentially
impacting
function.
To
study
glioma
its
dynamics,
we
propose
a
flexible
mathematical
model,
including
tumor,
peri-tumoral
as
well
healthy
tissue.
From
mechanical
point
view,
consider
multicompartment
porous
medium
model
movement
clearance
solutes
that
are
convected
but
also
diffuse
extra-cellular
space.
Our
results
indicate
impairment
on
system
due
growth
two-fold.
First,
resulting
from
leakage
blood
vessels
or
occlusion
peri-vascular
spaces,
considered
an
exit
route,
result
local
high
pressure
zone,
consequently
impairing
negatively
clearance.
Second,
changes
porosities
(volume
fraction
certain
compartments
such
perivascular
extracellular
spaces),
disruption
transport
brain.
effect
similar
enhanced
permeability
retention
obtained
using
biologically
relevant
parameter
values
our
model.
can
be
viewed
first
step
towards
digital
twin
drug
contrast
product
delivery
within
cerebro-spinal
directly
(
e
.
g
intrathecal
injection)
patients
suffering
gliomas.
Journal of Neuroscience,
Journal Year:
2024,
Volume and Issue:
44(23), P. e1095232024 - e1095232024
Published: April 24, 2024
Aggression
is
a
crucial
behavior
that
impacts
access
to
limited
resources
in
different
environmental
contexts.
Androgens
synthesized
by
the
gonads
promote
aggression
during
breeding
season.
However,
can
be
expressed
non-breeding
season,
despite
low
androgen
synthesis
gonads.
The
brain
also
synthesize
steroids
(neurosteroids),
including
androgens,
which
might
Male
song
sparrows,
Melospiza
melodia
,
are
territorial
year-round
and
allow
study
of
seasonal
changes
steroid
modulation
aggression.
Here,
we
quantified
following
simulated
intrusion
(STI)
for
10
min
wild
adult
male
sparrows
seasons.
Using
liquid
chromatography-tandem
mass
spectrometry
(LC-MS/MS),
examined
11
steroids:
pregnenolone,
progesterone,
corticosterone,
dehydroepiandrosterone,
androstenedione,
testosterone,
5a-dihydrotestosterone,
17-estradiol,
17a-estradiol,
estriol,
estrone.
Steroids
were
measured
blood
microdissected
regions
regulate
social
behavior.
In
both
seasons,
STI
increased
corticosterone
brain.
had
no
rapid
effects
on
androgens
or
estrogens.
Intriguingly,
testosterone
androstenedione
several
behaviorally
relevant
regions,
but
not
blood,
where
remained
non-detectable.
Also
progesterone
specific
regions.
Overall,
socially
modulated
levels
more
prominent
Brain
vary
with
season
context
region-specific
manner
suggest
role
neuroandrogens
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2022,
Volume and Issue:
unknown
Published: April 14, 2022
AlphaFold2
(AF)
is
a
promising
tool,
but
it
accurate
enough
to
predict
single
mutation
effects?
Here,
we
report
that
the
localized
structural
deformation
between
protein
pairs
differing
by
only
1-3
mutations
–
as
measured
effective
strain
correlated
across
3,901
experimental
and
AF-predicted
structures.
Furthermore,
analysis
of
∼11,000
proteins
shows
local
change
correlates
with
various
phenotypic
changes.
These
findings
suggest
AF
can
range
magnitude
single-mutation
effects
on
average,
propose
method
improve
precision
predictions
indicate
when
are
unreliable.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: Oct. 12, 2023
AI
algorithms
have
proven
to
be
excellent
predictors
of
protein
structure,
but
whether
and
how
much
these
can
capture
the
underlying
physics
remains
an
open
question.
Here,
we
aim
test
this
question
using
Alphafold2
(AF)
algorithm:
We
use
AF
predict
subtle
structural
deformation
induced
by
single
mutations,
quantified
strain,
compare
with
experimental
datasets
corresponding
perturbations
in
folding
free
energy
ΔΔ
G
.
Unexpectedly,
find
that
physical
strain
alone
–
without
any
additional
data
or
computation
correlates
almost
as
well
state-of-the-art
energy-based
machine-learning
predictors.
This
indicates
AF-predicted
structures
encode
fine
details
about
landscape.
In
particular,
significant
information
on
stability,
enough
estimate
(de-)stabilizing
effects
thus
paving
way
for
development
novel,
structure-based
stability
design
evolution.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: March 3, 2024
Abstract
Cymoxanil
(CYM)
is
a
synthetic
acetamide
fungicide
that
has
been
widely
used
to
combat
downy
mildew
diseases
in
grapevine
cultures
and
late
blight
tomato
potato
caused
by
the
oomycetes
Plasmopara
viticola
Phytophthora
infestans
,
respectively.
Despite
its
extensive
application,
biochemical
mode
of
action
CYM
remains
elusive.
Previous
reports
indicate
affects
growth,
DNA
RNA
synthesis
inhibits
cell
biomass
production
respiration
rate
well-characterized
fungal
model
Saccharomyces
cerevisiae
.
We
therefore
this
further
characterize
effect
on
mitochondria.
found
oxygen
consumption
whole
cells
after
3
h
exposure,
which
persists
over
time.
Using
isolated
mitochondria,
we
demonstrated
specifically
cytochrome
c
oxidase
(C
O)
activity
during
oxidative
phosphorylation.
Based
molecular
docking
algorithms,
propose
acts
blocking
interaction
(cyt
)
with
C
O,
hampering
electron
transfer
inhibiting
O
catalytic
activity.
Although
other
targets
cannot
be
excluded,
our
data
offer
valuable
insights
into
can
instrumental
drive
informed
management
use
fungicide.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: May 15, 2024
Abstract
Research
in
lower
limb
wearable
robotic
control
have
largely
focused
on
reducing
the
metabolic
cost
of
walking
or
compensating
for
a
portion
biological
joint
torque
e.g.,
by
applying
support
proportional
to
estimated
torques.
However,
due
different
musculotendon
unit
(MTU)
contractile
speed
properties,
less
attention
has
been
given
development
controllers
that
can
steer
MTU
dynamics
directly.
Therefore,
closed-loop
needs
be
robust
across
fiber
phenotypes,
i.e.
ranging
from
slow
type
I
fast
IIx
humans.
The
ability
in-vivo
MTUs,
could
lead
new
class
robots
provide
precise
targeted
preventing
onset
injury
precision
rehabilitation
selected
damaged
tissues.
In
this
paper,
we
introduce
novel
framework
utilizes
Nonlinear
Model
Predictive
Control
(NMPC)
keep
peak
Achilles
tendon
force
within
predetermined
boundaries
during
diverse
range
cyclic
production
simulations
human
ankle
plantarflexors.
This
employs
computationally
efficient
model
comprising
modified
Hill-type
contraction
component
and
with
parallel
actuation.
Results
indicate
closed-form
muscle-actuation
model’s
computational
time
is
order
microseconds
muscle
velocity
properties.
Furthermore,
controller
achieves
timeframe
below
14
ms
,
aligning
physiological
electromechanical
delay
facilitating
its
potential
future
real-world
applications.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: June 1, 2024
Abs
tra
ct
Sex
dimorphism
is
one
of
the
key
features
dioecious
organisms,
which
shapes
almost
all
aspects
life
history
traits
from
early
development
to
cessation
life.
However,
specific
regulatory
differences
between
males
and
females
that
underlie
sex
are
underexplored
for
most
quantitative
traits,
including
immune
dimorphism.
Complex
patterns
variation,
example,
with
respect
numbers
types
contributing
alleles,
dynamic
changes
in
gene
expression,
context
dependency,
have
created
challenges
understanding
mechanistic
basis
immunity.
To
investigate
immunity,
we
focused
on
determination
hierarchy
master
switch,
transformer
(
),
Drosophila
melanogaste
r.
Two
different
perturbations
were
examined,
pseudomales
tra-
mutant)
pseudofemales
overexpression).
Changes
expression
response
infection
Providencia
rettgeri
,
an
ex
cellular
gram-negative
bacterium,
examined
each
these
controls
wild-type
phenotypes.
best
our
knowledge,
this
first
study
report
bacterial
any
insects
mutant
or
overexpressed
genotypes.
Survival
load
characterized
assess
overall
impact
examine
role
gene,
differentially
regulated
genes
identified
comparisons
wound
control
infected
flies
males,
females,
overexpression
animals.
The
survival
assay
showed
absence
female-specific
isoform
(Tra
F
XX
animals
significantly
lower
than
their
rate
aligned
males.
Tra
XY
resulted
a
surprising
outcome,
much
higher
relative
both
females.
DEG
analysis
significant
interaction
status
235
417
upstream
downstream
pathway,
respectively.
Interestingly,
GO
enrichment
found
49
response-related
biological
processes
enriched
among
Toll
signaling
no
categories
.
Further
regulators
pathway
its
targets
signal
detection,
transduction,
response,
pathway.
Moreover,
several
can
regulate
IMD
pathways
via
transcription
factor
NF-kB-Relish
some
regulators,
such
as
Diap2/IAP2
Charon.
Overall,
findings
highlighted
strong
potential
establish
Drosophila.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: June 15, 2024
Abstract
Proteins,
the
fundamental
building
blocks
of
biological
function,
orchestrate
complex
cellular
processes
by
assembling
into
intricate
structures
through
meticulous
interactions.
The
design
specific
protein-protein
interfaces
to
create
customized
protein
assemblies
holds
immense
potential
for
various
biotechnological
applications.
To
address
current
limitations
in
designing
heteromeric
interactions
multi-component
assemblies,
we
developed
a
hybrid
generative
AI
approach.
This
method
combines
deep
learning
and
automated
reasoning,
explicitly
considering
both
positive
negative
interaction
states
favor
desired
over
undesired
approach
leverages
Effie,
deep-learned
pairwise
decomposable
scoring
an
advanced
reasoning
tool
extended
multicriteria
optimization
this
function.
Here,
tested
ability
redesign
homomeric
bacterial
microcompartment
components
(BMC-H)
assemblies.
We
benchmarked
its
performance
against
ProteinMPNN,
sequence
autoregressive
model.
Our
silico
assessment,
complemented
experimental
validation,
highlights
outperformance
approach,
unlock
engineering
self-assembling
entities.