Methods in molecular biology,
Journal Year:
2023,
Volume and Issue:
unknown, P. 263 - 280
Published: Jan. 1, 2023
Abstract
Localization
of
mRNAs
at
the
front
migrating
cells
is
a
widely
used
mechanism
that
functionally
supports
efficient
cell
movement.
It
observed
in
single
on
two-dimensional
surfaces,
as
well
multicellular
three-dimensional
(3D)
structures
and
tissue
vivo.
3D
cultures
can
reveal
how
topology
extracellular
matrix
cell-cell
contacts
influence
subcellular
mRNA
distributions.
Here
we
describe
method
for
imaging
an
inducible
system
collective
cancer
invasion.
MDA-MB-231
spheroids
are
embedded
Matrigel,
induced
to
invade,
processed
image
with
single-molecule
sensitivity.
An
analysis
algorithm
quantify
compare
distributions
invasive
leader
cells.
The
approach
be
easily
adapted
applied
analyze
RNA
additional
settings
where
polarize
along
linear
axis.
The Journal of Cell Biology,
Journal Year:
2023,
Volume and Issue:
222(12)
Published: Nov. 3, 2023
Midbodies
function
during
telophase
to
regulate
the
abscission
step
of
cytokinesis.
Until
recently,
it
was
thought
that
abscission-regulating
proteins,
such
as
ESCRT-III
complex
subunits,
accumulate
at
MB
by
directly
or
indirectly
binding
resident
protein,
CEP55.
However,
recent
studies
have
shown
depletion
CEP55
does
not
fully
block
targeting
MB.
Here,
we
show
MBs
contain
mRNAs
and
these
MB-associated
can
be
locally
translated,
resulting
in
accumulation
proteins.
We
demonstrate
localized
translation
CHMP4B
is
required
for
its
site
3′
UTR-dependent
mRNA
successful
completion
Finally,
identify
regulatory
cis-elements
within
RNAs
are
necessary
sufficient
trafficking
propose
a
novel
method
regulating
cytokinesis
selective
mRNAs.
The EMBO Journal,
Journal Year:
2020,
Volume and Issue:
39(21)
Published: Sept. 18, 2020
Polarised
targeting
of
diverse
mRNAs
to
cellular
protrusions
is
a
hallmark
cell
migration.
Although
widespread
phenomenon,
definitive
functions
for
endogenous
targeted
and
their
relevance
modulation
in
vivo
tissue
dynamics
remain
elusive.
Here,
using
single-molecule
analysis,
gene
editing
zebrafish
live-cell
imaging,
we
report
that
mRNA
polarisation
acts
as
molecular
compass
orients
motile
polarity
spatially
directs
movement.
Clustering
protrusion-derived
RNAseq
datasets
defined
core
192-nt
localisation
element
underpinning
precise
sites
filopodia
formation.
Such
the
small
GTPase
RAB13
generated
tight
spatial
coupling
localisation,
translation
protein
activity,
achieving
subcellular
compartmentalisation
function
create
polarised
domain
extension.
Consequently,
genomic
excision
this
perturbation
targeting-but
not
translation-depolarised
endothelial
cells
induced
mispatterning
blood
vessels
zebrafish.
Hence,
polarisation,
expression,
primary
determinant
site
action,
preventing
ectopic
functionality
at
inappropriate
loci
orienting
morphogenesis.
FEBS Journal,
Journal Year:
2021,
Volume and Issue:
289(24), P. 7788 - 7809
Published: Nov. 19, 2021
Tissue
vascularization
through
the
process
of
angiogenesis
ensures
adequate
oxygen
and
nutrient
supply
during
development
regeneration.
The
complex
morphogenetic
events
involved
in
new
blood
vessel
formation
are
orchestrated
by
a
tightly
regulated
crosstalk
between
extra
intracellular
factors.
In
this
context,
RNA‐binding
protein
(RBP)
activity
translation
play
fundamental
roles
cellular
responses
triggered
particular
environmental
cues.
A
solid
body
work
has
demonstrated
that
key
RBPs
(such
as
HuR,
TIS11
proteins,
hnRNPs,
NF90,
QKIs
YB1)
implicated
both
physiological
pathological
angiogenesis.
These
critical
for
metabolism
messenger
(m)RNAs
encoding
angiogenic
modulators
and,
importantly,
strong
evidence
suggests
RBP–mRNA
interactions
can
be
altered
disease.
Lesser
known,
but
not
less
important,
mechanistic
aspects
synthesis
also
regulate
generation
vessels.
review,
we
outline
findings
demonstrating
implications
RBP‐mediated
RNA
regulation
control
Furthermore,
highlight
how
these
mechanisms
post‐transcriptional
gene
expression
have
led
to
promising
therapeutic
strategies
aimed
at
targeting
undesired
formation.
Proceedings of the National Academy of Sciences,
Journal Year:
2024,
Volume and Issue:
121(18)
Published: April 23, 2024
Regulation
of
subcellular
messenger
(m)RNA
localization
is
a
fundamental
biological
mechanism,
which
adds
spatial
dimension
to
the
diverse
layers
post-transcriptional
control
gene
expression.
The
cellular
compartment
in
mRNAs
are
located
may
define
distinct
aspects
encoded
proteins,
ranging
from
production
rate
and
complex
formation
localized
activity.
Despite
detailed
roles
that
have
emerged
over
past
decades,
identity
factors
anchoring
domains
remains
ill-defined.
Here,
we
used
an
unbiased
method
profile
RNA-bound
proteome
migrating
endothelial
cells
(ECs)
discovered
plasma
membrane
(PM)–associated
scaffolding
protein
A-kinase
anchor
(AKAP)12
interacts
with
various
mRNAs,
including
transcripts
encoding
kinases
Actin
remodeling
In
particular,
AKAP12
targets
transcript
coding
for
kinase
Abelson
Tyrosine-Protein
Kinase
2
(ABL2),
found
be
necessary
adequate
filopodia
angiogenic
sprouting.
Moreover,
demonstrate
ABL2
mRNA
PM
show
absence
AKAP12,
translation
efficiency
reduced.
Altogether,
our
work
identified
unique
function
sheds
light
into
mechanisms
iScience,
Journal Year:
2022,
Volume and Issue:
25(2), P. 103845 - 103845
Published: Feb. 1, 2022
Cancer
cells
experience
mechanical
confining
forces
during
metastasis
and,
consequently,
can
alter
their
migratory
mechanisms.
Localization
of
numerous
mRNAs
to
cell
protrusions
contributes
polarization
and
migration
is
controlled
by
proteins
that
bind
RNA
and/or
cytoskeletal
elements,
such
as
the
adenomatous
polyposis
coli
(APC).
Here,
we
demonstrate
peripheral
localization
APC-dependent
RNAs
in
within
confined
microchannels
type
dependent.
This
varying
phenotype
determined
levels
a
detyrosinated
tubulin
network.
We
show
this
network
regulated
mechanoactivity
with
mechanosensitive
ion
channels
increased
myosin
II
activity
direct
RAB13
RNA.
Through
specific
mislocalization
RNA,
migration.
Our
results
indicate
cell's
determines
its
ability
peripherally
target
utilize
them
for
movement
confinement.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: June 27, 2024
Summary
mRNA
localization
to
subcellular
compartments
is
a
widely
used
mechanism
that
functionally
contributes
numerous
processes.
targeting
can
be
achieved
upon
recognition
of
RNA
cargo
by
molecular
motors.
However,
our
understanding
how
this
accomplished
limited,
especially
in
higher
organisms.
We
focus
on
pathway
targets
mRNAs
peripheral
protrusions
mammalian
cells
and
important
for
cell
migration.
Trafficking
occurs
through
active
transport
microtubules,
mediated
the
KIF1C
kinesin.
Here,
we
identify
RNA-binding
protein
CNBP,
as
factor
required
protrusions.
CNBP
binds
directly
GA-rich
sequences
3’UTR
protrusion
targeted
mRNAs.
also
interacts
with
recruitment
their
trafficking
microtubules
periphery.
This
work
provides
reveals
motor-adaptor
complex
Biochemical Society Transactions,
Journal Year:
2024,
Volume and Issue:
unknown
Published: Dec. 6, 2024
Regionalisation
of
molecular
mechanisms
allows
cells
to
fine-tune
their
responses
dynamic
environments.
In
this
context,
scaffolds
are
well-known
mediators
localised
protein
activity.
These
phenomenal
proteins
act
as
docking
sites
where
pathway
components
brought
together
ensure
efficient
and
reliable
flow
information
within
the
cell.
Although
mostly
understood
hubs
for
signalling
communication,
some
have
also
been
studied
regulators
mRNA
translation.
Here,
we
provide
a
brief
overview
work
unravelling
how
scaffolding
facilitate
cross-talk
between
two
processes.
Firstly,
examine
activity
AKAP1
AKAP12,
that
not
only
capacity
anchor
mRNAs
membranes
but
can
regulate
synthesis.
Next,
review
studies
uncovered
ribosome-associated
RACK1
orchestrates
translation
initiation.
We
discuss
evidence
pointing
Ezrin
LASP1
early
stages.
end,
conclude
with
open
questions
propose
future
directions
will
bring
new
insights
into
regulation
by
proteins.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2020,
Volume and Issue:
unknown
Published: Nov. 30, 2020
Abstract
RNA
localization
and
local
translation
are
important
for
numerous
cellular
functions.
In
mammals,
a
class
of
mRNAs
localize
to
cytoplasmic
protrusions
in
an
APC-dependent
manner,
with
roles
during
cell
migration.
Here,
we
investigated
this
mechanism.
We
found
that
the
KIF1C
motor
interacts
is
required
their
localization.
Live
imaging
revealed
rapid,
active
transport
single
over
long
distances
requires
both
microtubules
KIF1C.
Two
color
directly
showed
transported
by
motors,
3’UTR
being
sufficient
trigger
KIF1C-dependent
Moreover,
remained
associated
peripheral,
multimeric
clusters
was
formation.
These
results
reveal
pathway
mammalian
cells,
which
has
dual
role
transporting
RNAs
promoting
clustering
within
protrusions.
Interestingly,
also
transports
its
own
mRNA
suggesting
possible
feedback
loop
acting
at
level
transport.