Systematic Biology,
Journal Year:
2019,
Volume and Issue:
69(4), P. 708 - 721
Published: Oct. 31, 2019
A
large
and
growing
fraction
of
systematists
define
species
as
independently
evolving
lineages
that
may
be
recognized
by
analyzing
the
population
genetic
history
alleles
sampled
from
individuals
belonging
to
those
species.
This
has
motivated
development
increasingly
sophisticated
statistical
models
rooted
in
multispecies
coalescent
process.
Specifically,
these
allow
for
simultaneous
estimation
number
present
a
sample
phylogenetic
using
only
DNA
sequence
data
independent
loci.
These
methods
hold
extraordinary
promise
increasing
efficiency
discovery
but
require
extensive
validation
ensure
they
are
accurate
precise.
Whether
identified
correspond
would
alternative
recognition
criteria
(such
measurements
reproductive
isolation)
is
currently
an
open
question
subject
vigorous
debate.
Here,
we
perform
empirical
test
making
use
classic
model
system
speciation
research,
flies
genus
Drosophila.
uniquely
comprehensive
on
isolation
available
this
system,
along
with
data,
ask
whether
Drosophila
inferred
under
many
decades
research.
We
found
based
isolation-based
inferring
boundaries
concordant
77%
pairs.
explore
discuss
potential
explanations
discrepancies.
also
amount
prezygotic
between
two
strong
predictor
posterior
probability
regardless
pairs
sympatrically
or
allopatrically
distributed.
[BPP;
speciation;
distance;
coalescent.].
Science Advances,
Journal Year:
2025,
Volume and Issue:
11(14)
Published: April 2, 2025
Attraction
of
Drosophila
melanogaster
toward
by-products
alcoholic
fermentation,
especially
ethanol,
has
been
extensively
studied.
Previous
research
provided
several
interpretations
this
attraction,
including
potential
drug
abuse,
or
a
self-medicating
coping
strategy
after
mate
rejection.
We
posit
that
the
ecologically
adaptive
value
alcohol
attraction
not
fully
explored.
Here,
we
assert
simple
yet
vital
biological
rationale
for
preference.
Flies
display
to
fruits
rich
in
alcohol,
specifically
ethanol
and
methanol,
where
contact
results
rapid
amplification
fatty
acid–derived
pheromones
enhance
courtship
success.
also
identify
olfactory
sensory
neurons
detect
these
alcohols,
reveal
roles
both
aversion,
show
valence
is
balanced
around
concentration.
Moreover,
demonstrate
methanol
can
be
deadly,
adult
flies
must
therefore
accurately
weigh
trade-off
between
benefits
costs
exposure
within
their
naturally
fermented
alcohol-rich
environments.
Proceedings of the National Academy of Sciences,
Journal Year:
2025,
Volume and Issue:
122(19)
Published: May 2, 2025
Current
genome
sequencing
initiatives
across
a
wide
range
of
life
forms
offer
significant
potential
to
enhance
our
understanding
evolutionary
relationships
and
support
transformative
biological
medical
applications.
Species
trees
play
central
role
in
many
these
applications;
however,
despite
the
widespread
availability
assemblies,
accurate
inference
species
remains
challenging
due
limited
automation,
substantial
domain
expertise,
computational
resources
required
by
conventional
methods.
To
address
this
limitation,
we
present
ROADIES,
fully
automated
pipeline
infer
starting
from
raw
assemblies.
In
contrast
prominent
approach,
ROADIES
incorporates
unique
strategy
randomly
sampling
segments
input
genomes
generate
gene
trees.
This
eliminates
need
for
predefining
set
loci,
limiting
analyses
fixed
number
genes,
performing
cumbersome
annotation
and/or
whole
alignment
steps.
also
orthology
leveraging
existing
discordance-aware
methods
that
allow
multicopy
genes.
Using
genomic
datasets
large-scale
efforts
four
diverse
(placental
mammals,
pomace
flies,
birds,
budding
yeasts),
show
infers
are
comparable
quality
state-of-the-art
studies
but
fraction
time
effort,
including
on
with
rampant
tree
discordance
complex
polyploidy.
With
its
speed,
accuracy,
has
vastly
simplify
inference,
making
it
accessible
broader
scientists
Journal of Biological Rhythms,
Journal Year:
2018,
Volume and Issue:
33(6), P. 602 - 613
Published: Sept. 11, 2018
Recently,
we
reported
differences
in
the
expression
pattern
of
blue
light-sensitive
flavoprotein
cryptochrome
(CRY)
and
neuropeptide
pigment-dispersing
factor
(PDF)
neuronal
clock
network
high-latitude
Drosophila
species,
belonging
to
subgenus
(
virilis-repleta
radiation),
compared
with
cosmopolitan
D.
melanogaster
flies,
Sophophora
subgenus.
Alterations
rhythmic
patterns
activity
due
these
might
have
adaptive
significance
for
colonizing
habitats
and,
hence,
adjusting
long
photoperiods.
Here,
show
that
differing
CRY/PDF
are
only
present
those
species
radiation
colonized
high
latitudes.
The
mercatorum
hydei
a
melanogaster-like
behavior
despite
radiation.
Similarly,
2
holotropical
Zaprionus
genus,
more
closely
related
than
subgenus,
retain
behavior.
We
therefore
suggest
is
“ancestral
fly
phenotype”
alterations
neurochemistry
allowed
some
colonize
environments.
European Journal of Neuroscience,
Journal Year:
2018,
Volume and Issue:
51(1), P. 166 - 181
Published: Sept. 30, 2018
Life
on
earth
is
assumed
to
have
developed
in
tropical
regions
that
are
characterized
by
regular
24
hr
cycles
irradiance
and
temperature
remain
the
same
throughout
seasons.
All
organisms
circadian
clocks
predict
these
environmental
prepare
advance
for
them.
A
central
question
chronobiology
how
endogenous
changed
order
anticipate
very
different
cyclical
conditions
such
as
extremely
short
long
photoperiods
existing
close
poles.
Flies
of
family
Drosophilidae
can
be
found
all
over
world-from
tropics
subarctic
regions-making
them
unprecedented
models
studying
evolutionary
processes
underlie
adaptation
latitudes.
This
review
summarizes
our
current
understanding
processes.
We
discuss
changes
clock
genes
network
brain
Drosophilids
may
caused
behavioural
adaptations
high
Systematic Biology,
Journal Year:
2019,
Volume and Issue:
69(4), P. 708 - 721
Published: Oct. 31, 2019
A
large
and
growing
fraction
of
systematists
define
species
as
independently
evolving
lineages
that
may
be
recognized
by
analyzing
the
population
genetic
history
alleles
sampled
from
individuals
belonging
to
those
species.
This
has
motivated
development
increasingly
sophisticated
statistical
models
rooted
in
multispecies
coalescent
process.
Specifically,
these
allow
for
simultaneous
estimation
number
present
a
sample
phylogenetic
using
only
DNA
sequence
data
independent
loci.
These
methods
hold
extraordinary
promise
increasing
efficiency
discovery
but
require
extensive
validation
ensure
they
are
accurate
precise.
Whether
identified
correspond
would
alternative
recognition
criteria
(such
measurements
reproductive
isolation)
is
currently
an
open
question
subject
vigorous
debate.
Here,
we
perform
empirical
test
making
use
classic
model
system
speciation
research,
flies
genus
Drosophila.
uniquely
comprehensive
on
isolation
available
this
system,
along
with
data,
ask
whether
Drosophila
inferred
under
many
decades
research.
We
found
based
isolation-based
inferring
boundaries
concordant
77%
pairs.
explore
discuss
potential
explanations
discrepancies.
also
amount
prezygotic
between
two
strong
predictor
posterior
probability
regardless
pairs
sympatrically
or
allopatrically
distributed.
[BPP;
speciation;
distance;
coalescent.].