bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2021,
Volume and Issue:
unknown
Published: July 3, 2021
Abstract
The
activity
of
multiple
organelles
must
be
coordinated
to
ensure
cellular
lipid
homeostasis.
This
includes
the
peroxisomes
which
metabolise
certain
lipids
and
droplets
act
as
neutral
storage
centres.
Direct
organellar
contact
between
has
been
observed,
interaction
proteins
associated
with
membranes
these
shown,
but
functional
role
interactions
is
not
clear.
In
Drosophila
cells,
we
identified
a
novel
localization
subset
three
transmembrane
Peroxin
(Peroxin3,
Peroxin13,
Peroxin14),
normally
required
for
peroxisome
biogenesis,
newly
formed
droplets.
event
was
linked
significant
changes
in
size
or
number,
nor
recruitment
other
mature
observed.
presence
at
influences
their
function
relative
levels
Peroxin14
droplet
surface
directly
affected
regulatory
perilipin
lipases
corresponding
effects
on
triglyceride
storage.
Summary
statement
Interactions
thought
help
coordinate
management
lipids.
are
biogenesis.
A
spectrum
triacylglyceride
seen
when
each
12
conserved
Peroxins
knocked
down
fat
body
knockdown
having
largest
effect.
When
S2
cells
were
cultured
excess
oleic
acid,
Peroxin3,
Peroxin14,
localized
independently
markers.
altered
lipase
proteins.
Scientific Reports,
Journal Year:
2022,
Volume and Issue:
12(1)
Published: July 29, 2022
Abstract
High-calorie
diets
increase
the
risk
of
developing
obesity,
cardiovascular
disease,
type-two
diabetes
(T2D),
and
other
comorbidities.
These
“overnutrition”
also
promote
accumulation
a
variety
harmful
lipids
in
heart
peripheral
organs,
known
as
lipotoxicity.
However,
mechanisms
underlying
lipotoxicity
its
influence
on
pathophysiology
remain
unknown.
Our
study
uses
genetics
to
identify
role
ether
lipids,
class
potential
lipotoxins,
Drosophila
model
overnutrition.
A
high-sugar
diet
(HSD)
increases
produces
T2D-like
phenotypes,
including
insulin
resistance,
cardiac
failure.
Therefore,
we
targeted
lipid
biosynthesis
through
enzyme
dihydroxyacetonephosphate
acyltransferase
(encoded
by
gene
DHAPAT
).
We
found
that
reducing
fat
body
improved
TAG
glucose
homeostasis,
function,
respiration,
signaling
flies
fed
HSD.
The
reduction
may
cause
switch
molecular
from
lipogenesis
fatty
acid
oxidation
via
activation
PPARα-like
receptor,
bezafibrate
produced
similar
improvements
HS-fed
flies.
Taken
together,
our
findings
suggest
be
lipotoxins
reduce
fitness
during
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2020,
Volume and Issue:
unknown
Published: Nov. 20, 2020
Abstract
Peroxisome
biogenesis
diseases
(PBDs)
are
characterized
by
global
defects
in
peroxisomal
function
and
can
result
severe
brain,
liver,
kidney,
bone
malfunctions.
PBDs
due
to
mutations
peroxisome
factors
(PEX
genes)
that
responsible
for
assembly
function.
Increasing
evidence
suggests
import
functions
decline
during
aging.
However,
the
transcriptome
profiling
of
how
they
affect
disease
development
still
lacking.
PEX5
encodes
cytoplasmic
receptors
peroxisome-targeting
signal
types
1.
We
generate
knock-in
human
HEK293
cells
mutant
using
CRISPR
transiently
express
cysteine
11
alanine
(PEX5
C11A
),
which
blocks
recycling
exerts
dominant
negative
effect
on
mediated
import.
To
identify
conserved
responses,
we
perform
transcriptomic
analysis
Drosophila
oenocyte-specific
Pex1,
Pex12
Pex5
knockdowns
with
impaired
siRNA
respectively).
induction
triggers
vast
changes,
including
decreased
oxidative
phosphorylation,
increased
MAPK
signaling
HIPPO
signaling.
specifically
decreases
spliceosome
activity
increases
cholesterol
metabolism.
Using
gene
set
enrichment
(GSEA),
protein
processing
endoplasmic
reticulum
pathway,
ER-associated
degradation
(ERAD)
pathway
is
induced
all
PEX
.
dysfunction
elevates
eIF2α
phosphorylation
both
cell
culture
independent
XBP1
activation,
suggesting
integrative
stress
response
(ISR).
Moreover,
ribosome
genes
impairs
flies
cells.
Specifically,
5’-ETS
cleavage
dampens
40S
small
ribosomal
export
human.
Our
results
suggest
reduced
elevated
ISR
could
be
cellular
stress.
PROTEOMICS,
Journal Year:
2024,
Volume and Issue:
24(9)
Published: March 6, 2024
The
ectoparasitic
mite
Varroa
destructor
transmits
and
triggers
viral
infections
that
have
deleterious
effects
on
honey
bee
colonies
worldwide.
We
performed
a
manipulative
experiment
in
which
worker
bees
collected
at
emergence
were
exposed
to
for
72
h,
their
proteomes
compared
with
those
of
untreated
control
bees.
Label-free
quantitative
proteomics
identified
77
differentially
expressed
A.
mellifera
proteins
(DEPs).
In
addition,
by
orthogonal
analysis,
most
importantly,
Deformed
wing
virus
(DWV)
was
found
high
levels/intensity
Varroa-exposed
Pathway
enrichment
analysis
suggested
the
main
pathways
affected
included
peroxisomal
metabolism,
cyto-/exoskeleton
reorganization,
cuticular
proteins.
Detailed
examination
individual
DEPs
revealed
additional
changes
associated
function.
proteome
data
support
importance
TGF-β
signaling
Varroa-DWV
interaction
involvement
mTORC1
Hippo
pathways.
These
results
suggest
effect
DWV
feeding
aberrant
autophagy.
particular,
autophagy
is
selectively
modulated
peroxisomes,
observed
strongly
corresponded.
This
study
complements
previous
research
different
designs
suggests
peroxisome,
plays
key
role
infections.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: April 13, 2024
Summary
Host-microbe
systems
are
evolutionary
niches
that
produce
coevolved
biological
interactions
and
a
key
component
of
global
health.
However,
these
have
historically
been
difficult
field
research
due
to
their
experimental
intractability.
Impactful
advances
in
health
will
be
obtained
by
leveraging
silico
screens
identify
genes
involved
mediating
interspecific
interactions.
These
predictions
progress
our
understanding
lay
the
groundwork
for
future
vitro
vivo
experiments
bioengineering
projects.
A
driver
host-manipulation
intracellular
survival
utilized
host-associated
microbes
is
molecular
mimicry,
critical
mechanism
can
occur
at
any
level
from
DNA
protein
structures.
We
applied
structure
prediction
alignment
tools
explore
bacterial
structural
proteomes
examples
mimicry.
By
Legionella
pneumophila
proteome
its
many
known
mimics,
we
developed
validated
screen
virtually
host-microbe
system
uncover
signals
mimics
represent
candidate
proteins
mediate
host
microbial
proteomes.
successfully
this
other
with
demonstrated
effects
on
health,
Helicobacter
pylori
Wolbachia
,
identifying
mimic
candidates
each
proteome.
discuss
roles
may
play
important
-induced
phenotypes
show
Wobachia
infection
partially
rescue
loss
one
factors.
This
work
demonstrates
how
genome-wide
offers
an
opportunity
functionally
systems.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: June 22, 2024
Abstract
Acyl-CoA
binding
domain-containing
proteins
(ACBDs)
perform
diverse
but
often
uncharacterised
functions
linked
to
cellular
lipid
metabolism.
Human
ACBD4
and
ACBD5
are
closely
related
peroxisomal
membrane
proteins,
involved
in
tethering
of
peroxisomes
the
ER
capturing
fatty
acids
for
β-oxidation.
deficiency
causes
neurological
abnormalities
including
ataxia
white
matter
disease.
Peroxisome-ER
contacts
depend
on
an
ACBD4/5-FFAT
motif,
which
interacts
with
ER-resident
VAP
proteins.
As
ACBD4/5-like
present
most
fungi
all
animals,
we
combined
phylogenetic
analyses
experimental
approaches
improve
understanding
their
evolution
functions.
Notably,
vertebrates
exhibit
gene
sequences
both
ACBD5,
while
invertebrates
possess
only
a
single
protein.
Our
revealed
alterations
domain
structure
FFAT
sequences,
help
functional
diversification
We
show
that
Drosophila
melanogaster
protein
possesses
motif
tether
via
Dm_Vap33.
Depletion
Dm_Acbd4/5
caused
peroxisome
redistribution
wing
neurons
reduced
life
expectancy.
In
contrast,
filamentous
fungus
Ustilago
maydis
lacks
does
not
interact
Um_Vap33.
Loss
Um_Acbd4/5
resulted
accumulation
early
endosomes
at
hyphal
tip.
Moreover,
droplet
numbers
increased
mitochondrial
potential
declined,
implying
altered
homeostasis.
findings
reveal
differences
between
metabolic
across
evolution,
improving
our
ACBD4/5
function
health
The
need
unifying
nomenclature
ACBD
is
discussed.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Nov. 18, 2024
Summary
In
Drosophila
,
adult
females
store
more
fat
than
males.
While
the
mechanisms
that
restrict
body
in
males
are
becoming
clearer,
less
is
known
about
how
achieve
higher
storage.
Here,
we
perform
a
detailed
investigation
of
promote
storage
females.
We
show
greater
intake
dietary
sugar
supports
due
to
female-biased
remodeling
lipidome.
Dietary
stimulates
female-specific
increase
insulin-like
peptide
3
(Dilp3),
which
acts
together
with
peripheral
insulin
sensitivity
augment
insulin/insulin-like
growth
factor
signaling
pathway
(IIS)
activity
Indeed,
Dilp3
overexpression
prevented
decrease
after
removal
sugar.
Given
adult-specific
IIS
inhibition
caused
fat,
our
data
reveal
as
key
determinant
female
Cellular and Molecular Life Sciences,
Journal Year:
2024,
Volume and Issue:
81(1)
Published: April 22, 2024
Abstract
The
high-protein
diet
(HPD)
has
emerged
as
a
potent
dietary
approach
to
curb
obesity.
Peroxisome,
highly
malleable
organelle,
adapts
nutritional
changes
maintain
homeostasis
by
remodeling
its
structure,
composition,
and
quantity.
However,
the
impact
of
HPD
on
peroxisomes
underlying
mechanism
remains
elusive.
Using
Drosophila
melanogaster
model
system,
we
discovered
that
specifically
increases
peroxisome
levels
within
adipose
tissues.
This
HPD-induced
elevation
is
attributed
cysteine
methionine
triggering
expression
CG33474
,
fly
homolog
mammalian
PEX11G
.
Both
overexpression
human
result
in
increased
size.
In
addition,
diets
both
reduce
lipid
contents,
process
depends
presence
Furthermore,
stimulates
breakdown
neutral
lipids
cell-autonomous
manner.
Moreover,
triggered
requires
TOR
signaling.
Finally,
found
promotes
inter-organelle
contacts
between
droplets
(LDs),
which
might
be
potential
for
-induced
fat
loss.
summary,
our
findings
demonstrate
CG33474/PEX11G
may
serve
an
essential
molecular
bridge
linking
dynamics
metabolism.
Graphical
abstract
HPD,
with
serving
key
amino
acids,
elevates
tissues
inducing
expression.
/
performs
two
biological
roles
evolutionarily
conserved
manner:
firstly,
leads
size;
secondly,
LDs
manner
(by
strengthening
peroxisome-LD
interaction).
signaling
required
cysteine-
methionine-induced
Aging
is
characterized
by
a
chronic,
low-grade
inflammation,
which
major
risk
factor
for
cardiovascular
diseases.As
one
of
the
important
metabolic
centers,
liver
shows
agerelated
dysregulation
lipid
metabolism,
increased
and
oxidative
stress
response.It
remains
poorly
understood
whether
pro-inflammatory
factors
released
from
contribute
to
non-autonomous
regulation
age-related
cardiac
dysfunction.We
showed
that
Drosophila
oenocytes
share
molecular
similarities
changes
with
mammalian
livers.We
perform
translatomic
profiling
on
understand
age-and
stress-regulated
gene
expression
changes.We
show
aging
downregulates
phosphorylation,
ribosome,
proteasome
peroxisomal
biogenesis
in
oenocytes,
whereas
innate
immune
response
Ras/MAPK
signaling
pathways
are
induced.Next,
we
identify
age-dependent
induction
cytokine
unpaired
3
(upd3)
primary
mechanism
aging.Oenocytespecific
knockdown
upd3
sufficient
block
aging-induced
arrhythmia.We
further
triggered
impaired
import
elevated
JNK
aged
oenocytes.Intriguingly,
oenocyte-specific
overexpression
Pex5,
key
receptor,
blocks
alleviates
arrhythmicity.Our
previous
studies
prompt
us
transcriptomic
responses
under
peroxisome
dysfunction.Thus,
performed
RNA-seq
analysis
cellular
caused
defects
human
cells.Intriguingly,
endoplasmic
reticulum
genes
induced,
ribosome
vii
defects.Altogether,
these
demonstrate
role
hepatic
maintaining
homeostasis
whole
organismal
health.
CHAPTER
1.
GENERAL
INTRODUCTIONAging
dysfunction.Peroxisomes
organelles
regulate
aging,
metabolism.Liver
highly
enriched
peroxisomes.However,
little
known
about
how
peroxisomes
other
organs
non-autonomously.In
this
thesis,
I
first
summarize
current
knowledge
liver-heart
communications,
inflammation
aging.In
following
chapter,
present
(hepatocyte-like
cells)
or
stress.In
study,
discover
compromised
during
aging.Next,
genetic
evidence
showing
dysfunction
can
induce
arrhythmia
non-autonomously
through
proinflammatory
factor,
(homologous
interleukin
6).We
also
liver-aging
induced
production
arrhythmia.Lastly,
conduct
fly
dysfunction,
aiming
defects.We
stress.These
will
provide
new
insights
treat
related
disease
diseases.