bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2023,
Volume and Issue:
unknown
Published: Jan. 27, 2023
Abstract
Meiotic
recombination
through
chromosomal
crossing-over
is
a
fundamental
feature
of
sex
and
an
important
driver
genomic
diversity.
It
ensures
proper
disjunction,
allows
increased
selection
responses,
prevents
mutation
accumulation;
however,
it
also
mutagenic
can
break
up
favourable
haplotypes.
This
cost/benefit
dynamic
likely
to
vary
depending
on
mechanistic
evolutionary
contexts,
indeed,
rates
show
huge
variation
in
nature.
Identifying
the
genetic
architecture
this
key
understanding
its
causes
consequences.
Here,
we
investigate
individual
rate
wild
house
sparrows
(
Passer
domesticus
).
We
integrate
pedigree
data
identify
autosomal
crossover
counts
(ACC)
intra-chromosomal
allelic
shuffling
r̅
intra
)
13,056
gametes.
Females
had
1.37
times
higher
ACC,
1.55
than
males.
ACC
were
heritable
females
males
(ACC
h
2
=
0.23
0.11;
0.12
0.14),
but
cross-sex
additive
correlations
low
(r
A
0.29
0.32
for
Conditional
bivariate
analyses
showed
that
all
measures
remained
after
accounting
values
opposite
sex,
indicating
sex-specific
evolve
somewhat
independently.
Genome-wide
models
are
polygenic
driven
by
many
small-effect
loci,
which
act
trans
as
global
modifiers.
Our
findings
have
different
potential
birds,
providing
compelling
mechanism
evolution
sexual
dimorphism
recombination.
PLoS Genetics,
Journal Year:
2024,
Volume and Issue:
20(6), P. e1011329 - e1011329
Published: June 24, 2024
Precise
regulation
of
chromosome
dynamics
in
the
germline
is
essential
for
reproductive
success
across
species.
Yet,
mechanisms
underlying
meiotic
chromosomal
events
such
as
homolog
pairing
and
segregation
are
not
fully
understood
many
Here,
we
employ
Oligopaint
DNA
FISH
to
investigate
holocentric
pantry
moth,
Plodia
interpunctella
,
compare
our
findings
new
previous
studies
silkworm
Bombyx
mori
which
diverged
from
P
.
over
100
million
years
ago.
We
find
that
both
spermatogenesis
initiated
at
gene-rich
ends.
Additionally,
species
form
rod
shaped
cruciform-like
bivalents
metaphase
I.
However,
unlike
telomere-oriented
mechanism
observed
can
orient
multiple
different
ways
Surprisingly,
kinetochores
consistently
assemble
non-telomeric
loci
toward
center
chromosomes
regardless
where
centers
located
bivalent.
sister
do
seem
be
paired
these
Instead,
four
distinct
easily
Despite
this,
clear
end-on
microtubule
attachments
lateral
co-orienting
separated
kinetochores.
These
challenge
classical
view
paired,
poleward-facing
required
accurate
separation
meiosis
Our
here
highlight
importance
exploring
fundamental
processes
non-model
systems,
employing
novel
organisms
lead
discovery
biology.
Molecular Biology and Evolution,
Journal Year:
2024,
Volume and Issue:
41(3)
Published: Feb. 29, 2024
Abstract
Polyploidy,
a
significant
catalyst
for
speciation
and
evolutionary
processes
in
both
plant
animal
kingdoms,
has
been
recognized
long
time.
However,
the
exact
molecular
mechanism
that
leads
to
polyploid
formation,
especially
vertebrates,
is
not
fully
understood.
Our
study
aimed
elucidate
this
phenomenon
using
zebrafish
model.
We
successfully
achieved
an
effective
knockout
of
cyclin
N-terminal
domain
containing
1
(cntd1)
CRISPR/Cas9
technology.
This
resulted
impaired
formation
meiotic
crossovers,
leading
cell-cycle
arrest
during
metaphase
triggering
apoptosis
spermatocytes
testes.
Despite
these
defects,
mutant
(cntd1−/−)
males
were
still
able
produce
limited
amount
sperm
with
normal
ploidy
function.
Interestingly,
females,
it
was
capacity
egg
production
altered.
haploid,
aneuploid,
unreduced
gametes.
alteration
enabled
us
obtain
triploid
tetraploid
from
cntd1−/−
cntd1−/−/−
respectively.
Furthermore,
tetraploid-heterozygous
produced
reduced-diploid
gametes
yielded
all-triploid
or
all-tetraploid
offspring
when
crossed
wild-type
(WT)
zebrafish,
Collectively,
our
findings
provide
direct
evidence
supporting
crucial
role
crossover
defects
process
polyploidization.
particularly
evident
generation
eggs
fish
and,
potentially,
other
vertebrate
species.
PLoS Genetics,
Journal Year:
2024,
Volume and Issue:
20(3), P. e1011185 - e1011185
Published: March 15, 2024
The
segregation
of
homologous
chromosomes
during
meiosis
typically
requires
tight
end-to-end
chromosome
pairing.
However,
in
Drosophila
spermatogenesis,
male
flies
segregate
their
without
classic
synaptonemal
complex
formation
and
recombination,
instead
compartmentalizing
homologs
into
subnuclear
domains
known
as
territories
(CTs).
How
find
each
other
the
nucleus
are
separated
CTs
has
been
one
biggest
riddles
biology.
Here,
we
discuss
our
current
understanding
pairing
CT
review
recent
data
on
how
linked
partitioned
flies.
Molecular Biology and Evolution,
Journal Year:
2024,
Volume and Issue:
41(9)
Published: Aug. 24, 2024
Abstract
Meiotic
recombination
through
chromosomal
crossing-over
is
a
fundamental
feature
of
sex
and
an
important
driver
genomic
diversity.
It
ensures
proper
disjunction,
allows
increased
selection
responses,
prevents
mutation
accumulation;
however,
it
also
mutagenic
can
break
up
favorable
haplotypes.
This
cost–benefit
dynamic
likely
to
vary
depending
on
mechanistic
evolutionary
contexts,
indeed,
rates
show
huge
variation
in
nature.
Identifying
the
genetic
architecture
this
key
understanding
its
causes
consequences.
Here,
we
investigate
individual
rate
wild
house
sparrows
(Passer
domesticus).
We
integrate
pedigree
data
identify
autosomal
crossover
counts
(ACCs)
intrachromosomal
allelic
shuffling
(r¯intra)
13,056
gametes
transmitted
from
2,653
individuals
their
offspring.
Females
had
1.37
times
higher
ACC,
1.55
r¯intra
than
males.
ACC
were
heritable
females
males
(ACC
h2
=
0.23
0.11;
0.12
0.14),
but
cross-sex
additive
correlations
low
(rA
0.29
0.32
for
r¯intra).
Conditional
bivariate
analyses
showed
that
all
measures
remained
after
accounting
values
opposite
sex,
indicating
sex-specific
evolve
somewhat
independently.
Genome-wide
models
are
polygenic
driven
by
many
small-effect
loci,
which
act
trans
as
global
modifiers.
Our
findings
have
different
potential
birds,
providing
compelling
mechanism
evolution
sexual
dimorphism
recombination.
BMC Biology,
Journal Year:
2025,
Volume and Issue:
23(1)
Published: March 20, 2025
Abstract
Background
During
meiosis,
the
mammalian
genome
is
organised
within
chromatin
loops,
which
facilitate
synapsis,
crossing
over
and
chromosome
segregation,
setting
stage
for
recombination
events
generation
of
genetic
diversity.
Chromatin
looping
thought
to
play
a
major
role
in
establishment
cross
overs
during
prophase
I
diploid
early
primary
spermatocytes.
However,
conformation
dynamics
human
meiosis
are
difficult
study
experimentally,
due
transience
each
cell
division
difficulty
obtaining
stage-resolved
populations.
Here,
we
employed
machine
learning
framework
trained
on
single
ATAC-seq
RNA-seq
data
predict
CTCF-anchored
spermatogenesis,
including
types
at
different
stages
meiosis.
Results
We
find
dramatic
changes
genome-wide
patterns
throughout
meiosis:
compared
pre-and-post
meiotic
germline
types,
loops
spermatocytes
more
abundant,
variable
between
individual
cells,
evenly
spread
genome.
In
preparation
first
division,
also
include
longer
stretches
DNA,
encompassing
than
half
total
These
loop
structures
then
influence
rate
initiation
resolution
as
overs.
contrast,
later
mature
sperm
stages,
evidence
compaction,
with
being
confined
telomeric
ends
chromosomes.
Conclusion
Overall,
that
do
not
orchestrate
gene
expression
seen
but
important
roles
recombination,
influencing
positions
DNA
breakage
events.
Nucleic Acids Research,
Journal Year:
2025,
Volume and Issue:
53(7)
Published: April 10, 2025
Abstract
TAQing
technologies
are
based
on
the
restriction
enzyme-induced
DNA
double-strand
break
(DSB)
formation
in
living
cells,
which
results
large-scale
genomic
rearrangements
and
phenotypic
alterations.
Originally,
system
requires
heat
treatments
to
activate
enzymes,
sometimes
leads
cell
toxicity
or
stress
responses.
Here,
we
developed
a
blue-light-controlled
MagTAQing
system,
induces
DSBs
exclusively
upon
blue-light
exposure
by
assembling
split
enzymes
via
Magnet
modules.
Application
of
mitotic
budding
yeast
cells
successfully
triggered
various
exposure.
Since
this
technology
enables
conditional
induction
specific
tissues,
employed
meiotic
lacking
recombinase
Spo11
induce
artificial
DSBs.
Consequently,
Spo11-independent
resulted
aneuploidies
nonallelic
homologous
recombinations
between
repetitive
sequences
such
as
ribosomal
retrotransposons.
These
suggest
pivotal
role
Spo11-induced
recombination
preventing
chromosomal
abnormality.
Abstract
Recombination
is
essential
for
physical
attachments
and
genetic
diversity.
The
Han
Chinese
population
the
largest
ethnic
group
worldwide,
therefore,
construction
of
a
map
regarding
recombination
essential.
In
this
study,
164
240
couples
who
underwent
preimplantation
testing
monogenic
diseases
or
segmental
rearrangement
were
included
in
analysis.
Blastocysts
probands
from
by
single
nucleotide
polymorphism
array
location
was
determined
haplotype
phase
transitions
parent-offspring
pairs
at
loci
where
parents
heterozygous.
vitro
fertilization
embryos
constructed
expectation–maximization
algorithm
with
chip-level
data.
Our
results
confirmed
that
homologous
occurred
more
often
maternal
chromosomes,
age
effect
significant
recombination.
A
total
6,494
hotspots
(32.3%)
identified
genes
Online
Mendelian
Inheritance
Man.
uniform
association
between
aneuploidy
not
established.
addition,
carriers
breakpoints
reciprocal
translocations
analyzed,
locations
found
partly
overlapped
hotspots,
implying
possible
similar
mechanism
behind
both
events.
This
study
highlights
significance
constructing
map,
which
may
improve
accuracy
analysis
diseases.
Overlapping
translocation
are
worthy
further
investigation.
PLoS Genetics,
Journal Year:
2023,
Volume and Issue:
19(2), P. e1010347 - e1010347
Published: Feb. 10, 2023
Recombination
is
often
suppressed
at
sex-determining
loci
in
plants
and
animals,
self-incompatibility
or
mating-type
fungi.
In
fungal
ascomycetes,
recombination
suppression
around
the
locus
associated
with
pseudo-homothallism,
i
.
e
production
of
self-fertile
dikaryotic
sexual
spores
carrying
two
opposite
mating
types.
This
has
been
well
studied
species
complexes
from
different
families
Sordariales
:
Podospora
anserina
Neurospora
tetrasperma
However,
it
unclear
whether
this
intriguing
association
holds
other
species.
We
show
here
that
Schizothecium
tetrasporum
,
a
fungus
third
family
order
also
produces
mostly
was
due
to
high
frequency
second
meiotic
division
segregation
locus,
indicating
occurrence
single
systematic
crossing-over
event
between
centromere,
as
P
The
typical
organization,
plus
MAT1-1-1
pseudogene
MAT1-2
haplotype.
High-quality
genome
assemblies
types
analyses
revealed
region
1.47
Mb
locus.
detected
three
evolutionary
strata,
stepwise
extension
suppression.
strata
displayed
no
rearrangement
transposable
element
accumulation
but
gene
losses
disruptions
were
present,
precisely
margins.
Our
findings
indicate
convergent
evolution
across
multiple
ascomycete
particular
pattern
had
extended
stepwise.
pseudo-homothallism
lineages
presence
disruption
limits
are
consistent
recently
proposed
mechanism
sheltering
deleterious
alleles
explain
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Jan. 11, 2024
During
prophase
of
meiosis
I,
programmed
double
strand
breaks
(DSBs)
are
processed
into
crossovers,
a
critical
requirement
for
segregation
homologous
chromosomes
(homologs)
and
genome
haploidization
in
sexually
reproducing
organisms.
Crossovers
form
via
recombination
close
temporospatial
association
with
morphogenesis
the
synaptonemal
complex
(SC),
proteinaceous
structure
that
connects
paired
homologs
along
their
length
during
pachytene
stage.
Synapsis
paradigm
interplay
between
higher
order
chromosome
DNA
metabolism,
yet
temporal
functional
relationship
remains
poorly
understood.
Probing
linkage
these
processes
budding
yeast,
we
show
SC
assembly
is
associated
distinct
threshold
number
unstable
D-loops.
The
transition
from
bona
fide
paranemic
D-loops
to
plectonemic
DSB
single
end
invasions
(SEIs)
completed
midpachynema,
when
fully
assembled.
Double
Holliday
junctions
(dHJs)
at
time
desynapsis
resolved
crossovers
diplonema.
central
element
component
Zip1
shepherds
through
three
transitions,
including
first
exchange
second
capture,
as
well
dHJ
resolution.
mediates
SEI
formation
independent
its
polymerization
whereas
precocious
interferes
junction
Together,
our
findings
indicate
controls
while
assembled
but
also
beyond
disassembly,
possibly
by
establishing
spatial
constraints
sites.